Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------At4g35610                                     --------->At4g35610                              <---------ALFIN1                                           <-----------ARR10                            ------->TEIL            ------>ZmHOX2a(2)           <---------WOX13(1)                           <---------ALFIN1       <---------AGP1   <---------CCA1(2)     --------->GLK1(2)                          ------->GAMYB--------->GLK1(1)      --------->LBD16 --------->ATHB12                         --------->ANAC58   ===============HOX2a_HOX2a       <---------YAB1                         --------->ANAC46   <----------DOF2   ------>NtERF2--------------->AGL15                         --------->ANAC58   ------>ZmHOX2a(1)------->GAMYB <----------DOF2         <-   atccgaactagcattgtctgaatgccaacgcacctcttcagctatccttttggatctaaacatccgcctaaatctgtctttgattggaaagtatctaagt  4710700           ------>ZmHOX2a(2)                                              <---------At4g35610           ====================HOX2a_HOX2a                           --------->REM1(2)          =====================HOX2a_HOX2a                           <---------ETT(2)          <------ZmHOX2a(2)                                          --------->ETT(2)         <---------ARR14(2)                                        --------->LBD16         --------->ARR14(2)                                       <---------ANAC46   --------->ZAT2                                              <---------ALFIN1                     -   <---------ZAT2 <----------DOF2      ---------->ID1         <---------ZAT14          ------>ZmHOX2a(1)   --------->At4g35610                <-----------GT1         --------->ZAT14   <---------AtLEC2   <-   <---------At4g35610  ------>ZmHOX2a(1)  <----------DOF2  --------->ANAC46<----------DOF2        -- ---------DOF2<----------DOF2    <---------YAB1           --------->ZAT6  --------->At4g35610     <--   actttagctgggatccctttcttttcctcactactatgtttatccctttcccatcttgaaacactacaccgtggacagctttccatgtccttgtattcct  4710800                                       --------->YAB1                           --------->YAB1               <---------ARR11(3)                   --------                         --------->ANAC46 --------->ARR14(2)   --------->ANAC58            <---------LBD16   ---------->DOF2       --------->ANAC58 <---------ARR14(2)   --------->ANAC46           <---------LBD16 -------->LBD16  --------->ICU4     <---------CCA1(2)   --------->ARR11(3)               ------>ZmHOX2a(2) --------HSFB2a(2)       --------->ANAC58<---------CCA1(2)     --------->ANAC58        --------->ARR11(3) ------->HSFB2a(2)<---------ICU4  --------->YAB1     ------>MYB83<---------GLK1(2)<---------MYB46(3) -------LBD16    <---------YAB1 ------->TEIL         ------>MYB46(1)       <---------At4g35610   tccggtaaagaatgtagtcattcttacaagcatgaatcatatcatatccaaaaccaaacatcttcaagaaactcttcatctcatttgttgatctcgggag  4710900                                                       <-----------HVH21                                                   <-------TEIL                                 <----                                        <-------TEIL<---------ANAC58                         <-------                                       <------ZmHOX2a(2)                               --------->TOE1(2)                                      --------->AGP1<---------ANAC58                  <---------ANAC58                                      --------->ARR11(3)                  <----------DOF2<---------TOE1(2)                                      <---------ARR11(3)     --------->ZAT14          <---------ANAC46                            <---------ZAT14--------->ANAC58  <---------ZAT18          <---------ANAC58                            --------->ZAT14--------->ANAC58  <---------ZAT14      <----------DOF2                            --------->ZAT18--------->AtLEC2<---------At4g35610   <---------ANAC58 ->LBD16<---------MYB52(1)  <---------ZAT18--------->ANAC46--------->At4g35610   <---------ANAC58<---   aacattatccgttggaagcatggaattttgtgcagtttgagatccatgcaaaattcgtgtcagagcacaaggtttccttttctgcgtttcgtgcgatttt  4711000                          --------->REM1(2)                          <---------ZAT14                     <------ZmHOX2a(2)                                                       <<<<<<<<                     --------->CCA1(2)                                                       --------                    --------->ARR11(3)                                             --------->HSFC1(1)                    --------->AGP1 <---------HSFB2a(1)                             >>>>>>>ZML2                    --------->ARR14(2)                                             <---------HSFC1(1)                    <---------ARR11(3) <---------ANAC46                            <---------HSFB2a(2)                    <---------ARR14(2) <---------ANAC58                     <-----------RAV1(2)       ---------->DOF2    --------->ZAT14--------->AtLEC2            <---------ZAT14        <--------  ----------->GT1   <---------AGP1 --------->HSFC1(2)                --------->ZAT14    --------->GLK1(1) <--------P        <---------CCA1(2)  <-------TEIL  --------->AtLEC2 <---------ZAT18    <---------GLK1(1) -----LBD16       ----------->ARR10--------->HSFB2a(1)               --------->ZAT18  <------ZmHOX2a(1) ---DOF2--------->DAG2------>ZmHOX2a(2)<---------ANAC58 *TSS    <------------CBF   --------->HSFB2a(2) ------ANAC46  <---------ANAC46    <---------HSFC1(2)--------->REM1(2)    --------->GLK1(2)<---------LBD16   cgggttgaaaaaagtttgtgtagatctgtgtagaagaaggttcgtgcaaaatccatgtagaagaagtattgtgcagaatcaggttctaggaattccgcgt  4711100                                                 --------->HSFB2a(2)                                                 <---------HSFB2a(2)                                                <---------LBD16                                             <---------GLK1(1)                                             --------->GLK1(1)                                            --------->ARR11(3)                          <---------At4g35610                                            <---------ARR11(3)                          --------->At4g35610                                     <---------ETT(2)                              <------MYB46(1)                                    <------ZmHOX2a(2)                              <------MYB83                                   --------->ARR11(3)                            <--------P <<AtSR1                           <---------ARR14(2)                            --------->ALFIN1  -- ->LBD16      <---------ARR11(3)   --------->ARR14(2)                         <---------TOE2(3)    <- -ANAC46      --------->ARR11(3)   <---------ARR11(3)               <-----------HVH21   ----------->RAV1(2)   ttgtaatctgtgagaagatgtctgcgataaatgtgaagatcgacaagatttctgggagaagcagtttcagtttcaggtccaaggtagggcatctggtcta  4711200                <---------ANAC58                <---------ANAC46                <------MYB46(1)                <------MYB83                <---------ANAC58                                          --------->At4g35610               <---------DEAR3(1)                                         <---------At4g35610               --------->MYB55(2)                           <---------ARR14(2)               <---------MYB46(3)                           --------->ARR14(2)             <---------MYB52(1)                            --------->GLK1(1)           <---------DEAR3(1)        <-----------HVH21  <---------At4g35610         <-----------HVH21    --------->At4g35610           ------->TEIL          <------NtERF2     ----------->RAV1(2)    <---------At4g35610         --------->WRKY12        --------->At4g35610       --------->LBD16    ----------->RAV1(2)   >>>>>>>>>>>>>>>>>LFY         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------GLK1(1)    <---------AtMYB61        --------->YAB1           <---------ARR14(2) ------->ZAT18--------->ALFIN1 --------->ALFIN1 --------->ATHB12         --------->GLK1(2) --------ZAT18<---------MYB55(1)<---------ZAT18<---------YAB1      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   gtggacatctggctcggtgggtgttttggtccagtggaccttcaggcctatgataggcagcaaatccatgttgagcatctggcccgtgttagatagatgg  4711300                                                                                                    -                                  ----------------->AGL1                                      -------                                 ----------------->AGL1                                  ----------->HVH21                                 <-----------------AGL1                                <---------ANAC46                           <---------ARR11(3)                                          <---------ANAC58                           --------->ARR11(3)                            <-----------RAV1(1)  <------                           <---------ARR14(2)                      <---------ANAC46    <---------ANAC58                           --------->ARR14(2)                      *TSS  =====================RAV----                          <---------GLK1(1)   --------->At4g35610------->MYC3     --------->At4g35610                          --------->GLK1(1)   <---------At4g35610<-------MYC3     <---------At4g35610 <-----------RAV1(1)<------------CBF   <-----------RAV1(1) ----------->HVH21      ----------->RAV1(2)   cccttgttgggcatcttgtctgtattggatatctggcccttatggggcatctggtttgtctcggacatgtggtatatgttgggcatctggcctgatatgt  4711400     --------->At4g35610                                                                    ---------     ----------->RAV1(2)                    <------MYB83                          ----------->GT1     <---------At4g35610                    <------MYB46(1)                       --------->ANAC58 -------->ANAC46              <---------ANAC58        <------NtERF2               --------->ANAC58 -->ANAC55(2)                 <---------ANAC58   <---------ZAT6          ---------->DOF2   ---------- ---ANAC55(2)       <---------At4g35610    --------->MYB111(1)       ---------->DOF2       ========== --->TEIL    --------->WOX13(1)           <-----------RAV1(2)     <------ZmHOX2a(1)     --------->YAB1   atcaggcacctgaatcaattacagatgatcaagcttgtgatcaggcaggtagtggcagcaatggactaggaaaaagaaagaagaacgtaaacataaagct  4711500                   --------->At4g35610                   ----------->GT1                   <---------At4g35610                   --------->ANAC55(2)                   <---------ANAC55(2)                 <-----------RAV1(2)               <-----------HVH21              --------->TGA1a              --------->ANAC58              --------->ANAC58              --------->O2              --------->ANAC46       --------->HSFB2a(2)         --------->PCF2              <---------HSFB2a(2)                       <---------REM1(1)    - >DAG2  <---------PCF2       --------->At5g28300                         <-----------RAV1(1)  ------- >DOF2  --------->TCP15(1)  ----------->GT1  <---------YAB1          --------->ARR11(3)     xxxxxxxxx =======================bZIP_DOF --------->ICU4                    <---------YAB1        --------->At4g35610   gttttctatgggtcccaagtcaggtgataactgtaattactggaaatactattgtttttgagaaacaatatgattttgttgttgtaacagaagatgacac  4711600  Previous    Next  AGI:  At2g11720.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 1.1e-150 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element) Range:  from: 4706254    to: 4711056    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g11730.1    Description:  transposable element gene. copia-like retrotransposon family, has a 7.2e-39 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum) Range:  from: 4711367    to: 4713589    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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