Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        -------->P                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                  --------->ANAC58                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <---------ALFIN1                                --------->ANAC58                XXXXXXXXXXXXXXXXXXXXX>MIR2935                     --------->ANAC46               <---------ARR14(2)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               --------->ARR14(2)                              <---------ZAT18       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------At4g35610      --------->ANAC58                            --------->ARR14(2) <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->ANAC58   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->ZAT14      --------->ANAC46   =========================HOX2a_HOX2a  <---------ZAT14    <-----------GT1      <------ZmHOX2a(2) <------ZmHOX2a(1)   --------->ZAT18   --------->MYB46(3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ------ZmHOX2a(1)--------->MYB46(3) <------ZmHOX2a(2) --------->At4g35610      --------->ZAT2 ---NtERF2  --------->YAB1          ==============HOX2a_HOX2a <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->LBD16 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ---------->DOF2 ---LBD16   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ARR14(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) >ARR14(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------ZAT2 -ARR14(2)<-----------HVH21  <---------ALFIN1   xxxxxxxxxxxxxxxx>smallRNA(s)   --------->At4g35610   gaggaatcaccccatcagaaccactcgatcaccactcgatcaccaggaagcctatctgctcattctgcactcaaccagacaagctgagaacaaagaagag  4701000                                                                                                 <---                                                                                                 ----                                                                                            ---------                                                                                         --------->ZAT18                                                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             <---------ATHB12   -----                                                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <---------ALFIN1               <------ZmHOX2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->AtMYB61                    xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxx              --------->MYB46(3)                 --------->ZAT18   --------->At4g35610   --------->ZAT14            <-----------GT1  <---------DAG2      <---------ZAT18  <---------MYB46(3)     xxxxxxxxxxxx       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      ------>ZmHOX2a(2) <---------DEAR3(1)     <---------ZAT14   --------->GLK1(2)  <------ZmHOX2a(2)   --------->ANAC46      <-----------HVH21xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------ALFIN1<-----------HVH21 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   aagagaagccgaagaaaccactcgatcaccaccttatgacatccactcgatcgcactcgatcacagggtcgctggaccattcaatctcgacttcactgca  4701100                         xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <xxxxxxxxxxxxxxxxsmallRNA(i)                   ------>NtERF2             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   <---------At4g35610            <xxxxxxxxxxxxxxxxsmallRNA(s)                                           --------->At4g35610           <xxxxxxxxxxxxxxxxsmallRNA(s)                                      <---------ATERF1(2)        --------->ANAC58<xxxxxxxxxxxxxxxxsmallRNA(s)                         --------->ATERF1(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 ===================RAV ------At4g35610   --------->GLK1(1)                             --------->At4g35610       ---------- ----->At4g35610  --------->ARR14(2)                             <---------At4g35610       <xxxxxxxxx >ANAC46------>ZmHOX2a(2)---------->DOF2                --------->ZAT6 --------->ARR14(2)  <---------ATHB12 -->TEIL--------->ANAC58----------->HVH21              <------ZmHOX2a(2)  <-----------RAV1(1)    <--- xxsmallRNA(fl3) --------->ATERF1(1)                   ==============HOX2a_HOX2a <-----------RAV1(2)- xxxxx>smallRNA(si3)  ----------->RAV1(2)   --------->YAB1    <------ZmHOX2a(1)<-----------HVH21 ----   tctcactcgatcgcaagacggagcccctgaagcccagtttgatcaatgacaaactcgatcactaggaagctcatttctgccggtcagatgccaatgacat  4701200                         --------->ARR14(1)                         --------->CCA1(2)                        <---------GLK1(2)                        --------->ARR14(2)                 --------->O2                 <---------ANAC58                 --------->TGA1a                 <---------TGA1a                 <---------bZIP60(2)                 <---------bZIP60(1)                 --------->bZIP60(1)                 <---------O2                 <---------ANAC46                 <---------ANAC55(1)                 --------->ANAC55(2)              ----------->TGA1             <xxxxxxxxxxxxxxxxsmallRNA(s)            <---------ICU4            --------->YAB1           <------ZmHOX2a(2)          --------->ARR11(3)          <---------ARR11(3)                   <---------ICU4       <---------TOE2(2)<---------ARR14(2)     --------->ATHB51       <---------TOE1(2)--------->ARR11(1)     --------->ATHB12  xxxxxxxxxxxxxxxx>smallRNA(s)                <---------YAB1  <-----------HVH21   ----------->ARR10       --------->ICU4 xxxxxxxxxxxxxxxx>smallRNA(s)     <---------AHL20(2) ->HVH21 <------ZmHOX2a(1)<-------TEIL     <-------TEIL xxxxxxxxxxxxxxsmallRNA(se3)     <---------ARR11(3)                            --------------->AGL15 ------ARR14(2)  <---------ANAC55(2)  <---------AHL20(2)                 <-----------GT1 -------->MYB59  <---------ANAC58<---------AHL20(1)                    <---------AHL20(2) ----->ARR14(2)<---------TGA2(2) --------->AHL20(1)                  ----------->TBP   attcggtcgcaggatcatgacgtgaagattcgctatatatttagtttcattatttgtttcatttctcgcttatataaactgcctcttagggttttcccta  4701300                                      <----------DOF2                               --------->ARR11(3)                  *TSS       ------>ZmHOX2a(1)                             <---------YAB1                       <------NtERF2                           --------->ATHB51                     <xxxxxxxxxxxxxxxxsmallRNA(s)                           --------->YAB1                       --------->DEAR3(1)         <---------YAB1    <---------ICU4                       --------->RAP2.6(2)         <---------AHL20(2)<--------HAHB4                       --------->ANAC46 --------->ARR14(2)       <---------YAB1         --------->ANAC46--------->LBD16    <----------DOF2 <---------ARR14(2)       --------->ICU4 <-----------GT1 <---------YAB1      --------->TOE1(2) --------->GLK1(2)   <-----------GT1  <---------DAG2   <----------DOF2      ----------->RAV1(2)   gagcatccgatattattcgctattatccattattatctcgcttttacattttcgcaactttgatagccgcagtgtttctcctgcgactttgtagtttcgc  4701400                                                                                  --------->ZAT14                                                                                  <---------ZAT14                                                                            <----------DOF2                                                                       <---------ARR14(2)                                                                      <---------GLK1(1)                           <---------YAB1                             --------->GLK1(1)                        --------->ARR11(3)                            <----------TaMYB80                      --------->HSFC1(2)                             <---------ARR14(2)                      <---------HSFB2a(1)                            --------->ARR14(2)                      <---------HSFC1(2)                             --------->ARR11(3)                      --------->HSFB2a(1)                         <---------TOE2(3)                  --------->ANAC58                              ---------->DOF2   --------->ZAT18                  --------->ANAC58                    --------->YAB1 <---------ARR11(3)            <---------DEAR3(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)---------->TaMYB80           <---------MYB46(3) <--------P           ------>ZmHOX2a(1)<------ZmHOX2a(1)        --------     <---------LBD16---------->DOF2         <---------ZAT18     --------->MYB52(1)<---------ZAT18  <-   ttccattccctggtcgtttcaagaaagttctggttgcaaaatacagagccctcctataaaaacacataaaggatatccctttagtggactgtctcgcgtt  4701500                  <---------ANAC58                  <---------ANAC46                                                        --------->WOX13(1)                  <---------ANAC55(2)                                                   <---------ZAT18                  --------->ANAC55(2)                               <---------ZAT6      --------->ZAT14                  <---------ANAC58                                  <---------ANAC46    <---------ZAT14                 <-------TEIL                            --------->ANAC58            <---------ANAC46    --------->MYB52(1)                                   --------->ANAC58          --------->ZAT14   ----------->HVH21                           <xxxxxxxxxxxxxxxxsmallRNA(s)        <---------ZAT14 ----------->RAV1(2)         --------->ICU4   ---------->DOF2    <---------AtMYB61 <---------ZAT18 <---------ANAC55(2)      <---------ARR11(3)<------ZmHOX2a(2) --------->ALFIN1     --------->ZAT18 -- --------->ANAC55(2)  ---------->DOF2     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------YAB1  ------- --->GT1      --------->ANAC58            <------ZmHOX2a(1)   <---------AtMYB61--------->ATHB12  ---- ----------GT1--------->ANAC58        ---------->DOF2    --------->ANAC46     --------->ICU4<--------   aatacctgacgagcacaagtacgtgaaagacctgattacagaaaggatcaaagaagtccaaggaatggtggtgttaagtcatgagtgcagtgcaatcact  4701600                                         <-----------GT1                                      <----------DOF2                                     ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)                                    <---------RVE1(1)                                   <---------ARR14(3)                                   --------->ARR11(3)                                   --------->ARR14(3)                                   --------->GLK1(2)                                   <---------ARR14(2)                                   <---------ARR11(3)                                   --------->ARR14(2)                                  <------ZmHOX2a(1)                                           <------                               <---------LBD16                                                -------                             --------->CCA1(2)                         <----------DOF2       ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   -                            --------->AGP1 --------->ZAT6   --------->MYB59                xxxxxxxxxx                            <---------ARR14(2)        --------------->AGL15                --------->ARR11(3)                            <---------ARR11(3)        <---------------AGL15               xxxxxxxxxxx ------->At4g35610          --------->ARR11(3)       <-----------------AG            xxxxxxxxxxxxxxxx -->WOX13(1)                --------->ARR14(2)       <-----------------AGL1  --------->MYB46(3)  <--- ----->YAB1       --------->DAG2  <---------GLK1(2)  <-----------------AGL2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -ATHB12         ---------->DOF2--------->LBD16<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <-----------------   cagaagaagattgttcaagaaaagttggaagatccaggatcttttactctaccatgctctattaggcaattgactttcaacaattgtctatgtgatctag  4701700         <---------ZAT2         --------->At4g35610               --------->ARR14(2)     <-----------HVH21                --------->TOE1(2) ---HSFB2a(2)                        --------->At4g35610                            <---------ANAC46 -->HSFB2a(2)                        --------->ZAT2                             <---------ANAC58 -------->ATERF1(1)                  <---------ZAT2                             <---------ANAC58 xxxxxxxxxxx>smallRNA(si3)<-------GAMYB    <---------ARR14(2)                <---------GLK1(2) xxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)==============================HOX2a_HOX2a >smallRNA(i)            <-----------RAV1(1) <-------TEIL           ------>ZmHOX2a(2)<---------YAB1 ---ZmHOX2a(1)      <---------ALFIN1--------->GLK1(2)    --------->ANAC58--------->TOE1(3)       ---- ----WRI1<---------At4g35610   ---------->DOF2           --------->ANAC58--------->TOE2(3) <------ZmHOX2a(1)   gagcctcagtcagcttaatgccactctctgttgtaaagaagctgggattcgttcaaaacaagccttgtgatctaaccttgattcttgctgataggacttc  4701800                                                                                                    =                                                                                                    -                                                                                                   ==                                                                                                   <-                                      <---------YAB1                                              ---                                      <---------WOX13(1)                                          <--                                    --------->YAB1                                                <--                                    --------->ATHB12              <-----------RAV1(1)             ---                                    <---------ICU4              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    -------->HAHB4     <------NtERF2                             ====              <----------DOF2      <---------ATHB12    --------->ATERF1(1)                       <---           ---------->ID1          --------->ICU4     <---------ATERF1(1)                      <-----      <----------DOF2            --------->YAB1       ------>NtERF2                            <-----     <---------DAG2    --------->ARR14(2)             <---------RAP2.3(1)        <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->ARR11(3)  <---------ARR14(2)            --------->DEAR3(1)  <---------ANAC58 <----------   <---------ARR11(3) <------ZmHOX2a(1)             --------->RAP2.3(1)  <---------ANAC58 --------->GLK1(2) ------>DOF2 --------------->AGL15 <---------YAB1   --------->ATERF1(1)<---------YAB1  xxxxxxxxxxxxxx   aaagagaccttttggccttttagaggatgtgccagtaatgattaatagagtagaggcgcctactgattttgttgtgcttgagatggatgaagaatctaag  4701900  Previous    Next  AGI:  At2g11700.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 2.2e-72 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 4701367    to: 4703407    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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