Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         <---------ANAC46                                                         <---------ANAC58                                                         <---------ANAC58                                                    <---------ANAC58                                                    --------->ALFIN1                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                         --------->At4g35610                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   --------->ATERF1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                 <---------ANAC46   <---------ANAC46                                <---------ABI4(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                <------NtERF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 <-                 --------->ALFIN1<---------DEAR3(1) <---------ANAC58                               --                 ----------->HVH21 <------NtERF2 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <-             <------ZmHOX2a(1)  --------->ATERF1(1) <xxxxxxxxxxxxxxxxsmallRNA(i)                   --          <-----------RAV1(2)  ------>NtERF2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <-          <---------HSFB2a(2) <---------RAP2.3(2)--------->ALFIN1                                 <--          <---------LBD16     <---------RAP2.3(3)<---------AtMYB61 ---------->DOF2       <---------At4g35610     <---------ICU4           <---------DEAR3(1) xxxxxxxxxxxxxxxx>smallRNA(i)            --------->At4g35610     --------->YAB1        --------->ALFIN1xxxxxxxxxxxxxxxx>smallRNA(i)    ----------->GT1       <xxx    <---------ATHB12     --------->ALFIN1<---------At4g35610 ---------->ARF1            <xxxxxxxxxxxx   cttacaatcatcccaggaggtgatggagtttgggggcggagtcttctcccagtggtgtgccttgtctcccaaagagaagggaaatagtctgagcttaaac  4587900          <---------bZIP60(1)          --------->bZIP60(1)       ----------->HVH21  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->At4g35610 --------ARR11(3)                              <---------At4g35610 ------->ARR14(2)                              --------->ZAT2 --------ARR14(2)              ----------->RAV1(1)    --------->ICU4 ------->ARR11(3)   ------>ZmHOX2a(2)       ---------->DOF2                                         < --------ARR11(1) <---------ARR11(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   < -------CCA1(2)   --------->ARR11(3)       --------->YAB1                                 ------->TEIL xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            xxxxxxxxxxx xxxxxxxxxxxsmallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              <---------ETT(2)   <   atatcttcagtgacaccattgatcttagtaaggccacagagcctatcaaagctgtcaagatggtccaaggggtcttccataggtagaccatgaaacttgt  4588000               ----------->HVH21             <---------At4g35610             --------->At4g35610       --------->ATHB12      <------ZmHOX2a(2)           ---------->DOF2       <---------MYB46(3)               <---------ANAC58      <---------YAB1           ------>ZmHOX2a(2)       --------->ALFIN1                  <---------ANAC58  <---------TOE1(2)          <---------ARR11(3)        <---------AtMYB61                 <---------ANAC46 ---------ANAC58     --------->AtMYB61              <-----------RAV1(1)             <---------ICU4 ---------ANAC58     <---------ALFIN1           <---------ZAT14                    <---------YAB1 xxxxx>smallRNA(i)--------->bZIP60(1)           --------->ZAT14                    --------->ICU4 ---------ANAC46  <---------bZIP60(1)  <---------MYB46(3)   <------NtERF2    <---------DEAR3(1)   ttccttggatcattgagatgacaccactcttgatctcaaagttgttgttctgaactggtggtggcactatctcttgtcttcggtgatgattccttggggc  4588100                                      <------MYB46(1)                                      <------MYB83                             <xxxxxxxxxxxxxxxxsmallRNA(s)                       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <---------At4g35610                     <---------WOX13(1)                              xxxxxxxxxxxxxxxx>smallRNA(s)                     <--------P     --------->ALFIN1             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <-------GAMYB <------MYB46(1)                <-------GAMYB <---------ZAT2                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        ===========================RAV                   <---------MYB46(3)<---------MYB46(3)         <-----------RAV1(1)   <----------DOF2                <---------ANAC46  <------MYB83             <---------MYB46(3)  ----------->RAV1(2)                <---------ANAC58  <---------ANAC46       <---------ANAC46      --------->ZAT2                <---------ANAC58 --------->MYB111(1)   <---------MYB46(3)      --------->At4g35610          <---------TOE2(3)      --------->MYB46(2) <---------bZIP60(2)------>ZmHOX2a(2) <---------At4g35610   attaccagcactaatgtttcttggttgatcaacattaggtgggtcttgaacatgaagtggtttgttctgttgatccatagcagctggtctttgctgatca  4588200                                                                              <---------HSFB2a(1)                                                                            --------->ARR14(2)                                                                        --------->ZAT18                                                                        --------->ZAT14                                                                        --------->At4g35610                   <---------ANAC46                                     <---------ZAT14                   <---------ANAC58                                    --------->ALFIN1                   <---------ANAC58                                  --------->ALFIN1           <----             <---------AtMYB61                                     <------MYB46(1)             <-----           <----------DOF2                                         <------MYB83                <-----          <---------ANAC58                                        --------->MYB111(1)  ------>ZmHOX2a(2)          <---------ANAC58                                       <--------P <---------ARR14(2) <-----      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <----------DOF2     <---------MYB52(2)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <-----   cagggtgcctttgctttggtttcttgtaactcacgagctattctatctattctgtctctgaatggtagtaggtgtgcagaacctttggatcgattttgca  4588300    --------->ICU4 *TSS                      ----------->RAV1(1)                                                  ----- -----------AtSPL8        --------->ANAC46                                             ------>ZmHOX2a(2) ----ANAC46    <---------------AtSPL8                                          --------->ARR11(3) ----ANAC58    <---------------AtSPL3                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----ANAC58    --------------->AtSPL8                    ----------->GT1       <---------ARR11(3) ----AtLEC2 --------->MYB111(1)            --------->ANAC46 <-----------GT1---------->DOF2 ----------   tgtacaaagattagtagttagtacctataccacataaataagtagacgaaaatatgagttagtaacttgataaatgtaaaagaacttgatcgtaaaagtt  4588400            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->ARR11(3)   <---------ARR11(3)  <---------GLK1(1)  <---------CCA1(2)                                                                              <---  --------->GLK1(1)   ----------->RAV1(1)                                                   <xxxxxxxx ---->GLK1(2) <-----------GT1                                                            --------->ALFIN1 >DOF2     ----------->GT1 <---------ATHB12      ----------->GT1                --------->At4g35610   tctgatatcttgaatgtaacaatgcaacaatgaattggcaacatcgccaaattgataaacaggttttttaggcctacttatatgctgaagggtgtgaggt  4588500                                                                                       --------->REM1(2)                                                                                     <---------------AtSPL8                                                                                    --------->O2                                                                                    <---------ANAC55(2)                                                                                    <---------ANAC55(1)                                                                                    <---------ANAC46                                                   --------->WOX13(1)               <---------O2                                                <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------ANAC58                                                <-----------HVH21              <---------ICU4                      <-----------GT1           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ANAC58                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ZAT18     --------->YAB1                   --------->YAB1            <---------ANAC46                 <---------ATHB12                   ----------->GT1           <---------ANAC58                --------->ANAC58            <---------------AGL15            <---------ANAC58            --------->ANAC58            --------------->AGL15     <----------DOF2      <---------ZAT14   --------->ANAC58            ------>ZmHOX2a(1)       --------->At4g35610    --------->ZAT18  --------->WOX13(1) ----TEIL  <-----------------AGL3   <---------At4g35610    --------->ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(fl3)      ------->TEIL--------->ALFIN1          --------->ANAC58   tcagttcaattctcctacaaatagtaacatgtcgatgcagctatatggggtgtcaatccagtccactgttatcgctagcaatcaagacgtgtacagaaac  4588600                            <------MYB83                            <------MYB46(1)                           <---------MYB46(3)                     --------->YAB1                     -------->HAHB4                     <---------ICU4                    <---------YAB1                    --------->ICU4                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  --------->YAB1              ------>ZmHOX2a(1)                 <---------YAB1            <<<<<<<<<ARR2                <---------AHL20(2)    <-----------GT1                                           <----               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <xxxxxxx               --------->YAB1     <---------HSFB2a(2)  --------->ARR14(2)                 <xxxxxxxxxx             <---------GLK1(2)    --------->HSFB2a(2) <------ZmHOX2a(1)                  <xxxxxxxxxxx           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-----------RAV1(2)         --------->TOE1(2)<----       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->TOE1(2)                --------->ANAC58  <----       --------->ANAC58   <---------ANAC46 <<<<<<<<<ARR2                 --------->YAB1  <---------ALFIN1       --------->ANAC58 <---------MYB46(3) <<<<<<<<<ARR1            >>>>>>>>>>GT-3b  --------->ZAT18      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<<<<<<<<<ARR1         ----------->GT1  ---------->DOF2----    --------->WRKY18(1)<---------AtMYB61--------->MYB46(3)     ---------->DOF2--------->ANAC58 <xxxxx   tattaagtcaagccagattataatgatggtgggtttctagtaacaatcctaggccaggattcaaacaaagaaaaataagaacgtaagagccctactcgat  4588700                    ----------->GT1                    --------->At4g35610              <xxxxxxxxxxxxxxxxsmallRNA(i)                 ------>MYB46(1)                     <-----------RAV1(2)  <XXXXXXXXXXXXXXXXXXXXXMIR833-5P                <---------ATHB12 <---------MYB46(3) <---------ANAC55(2)         --------->ANAC58 -----ATHB12     -------->P                     --------->ANAC58         --------->AHL20(2) xxxxxxxxxsmallRNA(i) ----------->HVH21        --------->WOX13(1)      ----------->GT1           ---- xxxxxxsmallRNA(i)<-----------RAV1(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        xxxxxxxxxxxxxxx xxxxxsmallRNA(i)------>MYB83             ---------->DOF2              --------->ANAC58   --------->MYB52(1) --ZmHOX2a(2)   --------->MYB52(1)     --------->TOE2(3)    --------->CCA1(2)       <---------ZAT18 -----YAB1      ----------->RAV1(1)    <---------MYB59     --------->ARR14(2)       --------->ZAT18 < ----->ATHB12 --------->MYB46(3)       --------->TOE1(3)   <---------ARR14(2)  ---------->DOF2  <---- xxxxxxxxxxxsmallRNA(i)          <---------TOE2(3)--------->YAB1       --------->ANAC58 <---------MYB52(2)   cattgggtcgagtagaaccaacaggtgacaaaattaagaaacctaaatgcaatcaacaggggatacaaataacaagtaaataaaagtgcaattaacaggg  4588800  Previous    Next  AGI:  At2g11450.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.7e-208 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 4580698    to: 4588301    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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