Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->ZAT6                                                     ------>ZmHOX2a(2)                                                    <------ZmHOX2a(2)                                                   --------->ARR14(2)                                                   <---------ARR11(3)                <---------ZAT14                    --------->ARR11(3)                --------->ZAT14                    <---------ARR14(2)                               <                --------->ZAT18                    <---------AGP1                                 ---                <---------ZAT18 <---------AHL20(2) --------->AGP1                       <----------DOF2  --------->WOX13(1)      <----------DOF2    <---------YAB1            ----------->RAV1(1)   <-------   ttgtcaatcgacacttagtgcattgtgtctttattttatgttttgatattatagatcttgacactaatagagccaacaatttgatggctactttgaaatc  4541800                                                                 <---------ANAC58                                                                 <---------ANAC55(1)                                                                 --------->ANAC55(2)                                                                 <---------ANAC55(2)                                                                 <---------ANAC58                                                              <---------MYB52(1)                                                              ----------->TGA1                                        --------->ARR14(2)   <-----------HVH21                                        --------->ARR11(3)  <---------TGA1a                                        <---------ARR11(3)  <---------ANAC58                                        <---------ARR14(3)  <---------O2                                        --------->ARR14(3)  <---------ANAC58                                  <xxxxxxxxxxxxxxxxsmallRNA(i)----------->HVH21           <------MYB83      <---------WRKY38(1)          --------->ZAT2    <-----------GT1          <---------WRKY12             <---------ZAT2 --------->YAB1             --------->WRKY18(1)  --------->YAB1<---------TGA2(2) <---------ICU4            <--------ZAP1<-----------ARR10 <---------At4g35610            ----------->GT1 ---------YAB1      <---------CCA1(2)   --------->GLK1(2) --------->At4g35610    --------->DEAR3(1) ------>YAB1      --------->YAB1  --------->TOE2(3)   xxxxxxxxxxxxxxxx>smallRNA(s)<-----------HVH21 --GLK1(1) <------MYB46(1) <-----------HVH21   <-----------HVH21 <---------ANAC46--------->DREB2C(2)   tcataataacatttggtttctcataactcggtcaaaccacaaaatcttctgtcataactcagccgtgacgtattggtattccaccgtcaaactgaaaatt  4541900                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                              -------                                                                                              <------                                                                            --------->LBD16  --------                                                                           --------->HSFB2a(2)<------                                                                           <---------HSFB2a(2)-------                                                                          <---------LBD16    <-------                                                                      --------->ALFIN1     --------->WOX13(1)                                                           --------->MYB52(1)    --------->GLK1(2)                                                   <---------YAB1   <---------ANAC58     <---------MYB59                                               --------->AHL20(1)   <---------ANAC55(1) --------->ANAC58                                               <---------AHL20(2)   <---------ANAC46    --------->ANAC58                                              --------->AHL20(2)    <---------ANAC58   ------->TEIL                                              --------->ATHB51<-----------RAV1(1)--------->ARR14(2)                         <---------ATHB12     <---------AHL20(2)   <------NtERF2 <---------ARR14(2)   tgaatatttgagggtttagttattcgaatcaattcgaactcgtttgaattattttgaatactaactgttggcgtgttcgggagaatatggacccaatcat  4542000      --------->ARR14(2)      <---------ARR14(2)     --------->ATERF1(1)     <-------GAMYB    <---------DEAR3(2)    <---------MYB46(3)   <---------RAP2.6(2)   <---------DEAR3(1)                                                                   --------->YAB1   <---------DREB2C(2)                                                        --------->LBD16 ------------>AtMYB77                                                        --------->RAP2.3(2) ------ICU4                                                                  --------->RAP2.6(2) ----->ATHB51                                                                --------->ANAC58 ----->ATHB12                                                                --------->ANAC58 -----YAB1                                      ---------->DOF2            --------->At4g35610 ---->ICU4                                   --------->YAB1   <---------YAB1 --------->RRTF1(2)    <- -->YAB1                                    <---------YAB1<---------AHL20(2)--------->RAP2.3(1)    -- --HAHB4                                   --------->AHL20(2)<---------AHL20(1) ---------->DOF2   --- ->ICU4                                 --------->YAB1  --------->AHL20(2) <---------ZAT2        ---- ---ICU4             <---------DAG2    <---------YAB1   <---------AHL20(2) --------->ZAT2        <--- ->ATHB1             <----------DOF2 --------->YAB1     <---------YAB1    --------->ANAC46      ----- --ATHB12<---------ANAC46            <---------ICU4    --------->YAB1<-----------GT1 <----------DOF2-   tattggcggttccctataaaacactttttgtagtctcgataatgatataataaagaatattaatatgtttgtaacccagccgcaaagctttaataactca  4542100           <---------AHL20(2)          <---------AHL20(1)                                                               <---------          --------->AHL20(1)                                                            ------>ZmHOX2a(2)          <---------AHL20(2)                                                           --------->GLK1(1)          --------->AHL20(2)                                                           <---------GLK1(1) --------ALFIN1                                                                       <---------ARR11(3) ------->RAP2.6(2)                                                             <---------ANAC58   <-- ------>MYB46(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------TOE2(3)     --------->ARR11(3) ----->At4g35610      --------->ARR14(2)                     <---------WOX13(1)<---------ANAC58   --- ------At4g35610      <---------ARR14(2)               ------>ZmHOX2a(1)       <---------ANAC46  <--- ---->ANAC46     ------------>CBF                  <---------ZAT18       <---------YAB1<------ZmHOX2a(2) ----->NtERF2  <-----------GT1               <----------DOF2<------------CBF   *TSS  <---------GLK1(1)   gccacctctaaatttattcaccaatatacgactatatagatttagtgcttcagtgtcctactaattgacgataagatgatagcgtagagatctcttttcc  4542200                                                                              <---------MYB52(1)          <---------ZAT6                                                      --------->DOF5.7(2)   -  ------>NtERF2                                                              --------->TOE2(3)     <- --------->DEAR3(1)                        ----------->GT1                 <---------ATHB12    <----- -DOF2<---------ZAT14         --------->HSFB2a(2)                  ----------->GT1           -------- -------DEAR3(1)              <---------HSFB2a(2) <-----------GT1 <---------------AtSPL8     <------- ------>ANAC46        --------->MYB52(1)  <---------TOE2(3) --------->At4g35610             --------- ------LBD16          ------------>MYB.PH3(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    <----------   acggcgactctagtgttgatgagaaaacggtttcagaaggaaatgaggtatttatctcgaccatctgaatagtacaaatcgttagccatctaatgtggtg  4542300                                                                          --------->ATERF1(1)                                                           <---------TOE1(1)                                                          --------->SPL7  <------NtERF2                               <---------SPL7           <---------SPL7   <---------ATERF1(1)                              ------>ZmHOX2a(2)       <---------------AtSPL8          --------->ALFIN1    <---------YAB1            =====================HOX2a_HOX2a           <---------DEAR4(2) -------->ARR11(3)     --------->At4g35610  <------ZmHOX2a(1)           --------->ALFIN1 --------CCA1(2)       --------->ZAT2       --------->YAB1<-------TEIL  <---------DEAR3(1) ----ANAC46          <------ZmHOX2a(1)    <---------TOE2(3)<---------TOE2(1)      --------->DAG2 --->GT1             ================HOX2a_HOX2a      --------------->AtSPL3------>NtERF2 --ANAC46       <---------REM1(1)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<------NtERF2 >ALFIN1       <---------TOE2(3)   ----------->GT1    <---------TOE2(3)==============================HOX2a_HOX2a -RAV1(1) <---------ZAT6   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <------ZmHOX2a(1)      <------ZmHOX2a(2)   tatatcatgtttgtgttaatgtaggagctcgatcgtatggaaataaggataagaatgaggtacgacgaaaacaggaggcgcgataagggtgttccgatcg  4542400                                      --------->TOE2(2)                               <---------MYB46(3)                               --------->MYB46(2)                               --------->MYB52(2)                             <---------MYB52(1)            --------->TOE2(3)                            --------->TOE1(3)              --------->TOE1(3)                            --------->TOE2(3)            <---------TOE2(3)                          <---------TOE2(3)              <---------TOE1(3)                          <---------TOE1(3)          <----------DOF2                         <---------DOF5.7(2)       ------>NtERF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------WOX13(1)<----------DOF2 --------->TOE1(2) <---------DOF5.7(2)         --------->ANAC58  --------->ATHB12    --------->TOE1(3)            <------NtERF2--------->YAB1      --------->ANAC58 <---------YAB1       --------->TOE2(3)xxxxxxxxxxxxxxxx>smallRNA(s)         <-----------HVH21 -------   agtgtgattgcaatgctaaaattgccttaacgttagttaatctacgataagtccgccttaacgttagaataactcagccatcacacacgaataactcaaa  4542500                                                                          ------>MYB83                                                                          ------>MYB46(1)                                  --------->TOE1(3)                     --------->AtMYB61                                  --------->TOE2(3)                     ------->GAMYB              xxxxxxxxxxxxxxxx>smallRNA(s)                              <---------MYB59             --------->TOE2(2)  <---------TOE2(3)               <--------ATHB1             --------->TOE1(2)  <---------TOE1(3)            --------->YAB1        --------->AHL20(2)     <---------DOF5.7(2)         --------->ANAC58      ----------->GT1        <---------AHL20(2)<------NtERF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->YAB1      -----  --------->TOE2(3)       ------>NtERF2--------->YAB1      --------->ANAC58<---------ATHB12 --------- --->DOF2<---------AHL20(2) <----------DOF2        <-----------HVH21   --------->MYB46(3)   <--------   gaaacatcaatttaatctacgataagtccgccttaacgttagaataactcagccatcacacacgaataattcaaccaaacatcaagttaatctactataa  4542600                               ------->MYC2                     <----------DOF2                               --------->TOE1(2)             <-----------GT1                               <-------MYC3              --------->ARR11(3)                               ------->MYC3     --------->AHL20(1)       --------->TOE2(2) ---------->DOF2     --------->AHL20(2)         <---------AHL20(2)       --------->TOE1(2)         -- ---->GLK1(2)        <---------AHL20(2)         --------->AHL20(2) --------->YAB1                ---- >YAB1         --------->AHL20(2)      ----------->GT1   <---------ARR11(3)  <------ZmHOX2a(1)------- -------AGL15<---------GLK1(2) <-------MYC2    --------->AHL20(2) <---------YAB1         --------->AHL20(2)   tctgaaagagagacagattatatataaatcacacatgcgaatagaaaaaaaaaattgaagatttaactttgataacataggagtattgcaattcaataac  4542700  Previous    Next  AGI:  At2g11380.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 4542179    to: 4542935    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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