Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               ----------->GT1                                            ----------->GT1                                  <------MYB46(1)                                  <------MYB83            --------->ARR14(2)   <---------YAB1                                 --------->MYB111(1)--------->DAG2         xxxxxxxxxxxxxxxx>smallRNA(i)                                <---------MYB55(1) ---------->DOF2    --------->ETT(1)     <---------ANAC46                      <---------TOE2(3)  --------->ARR14(2)     <---------MYB52(1)         <---------ANAC58                     --------->YAB1      <---------ARR14(2)     --------->STY1(1)     <-----------RAV1(1)                    <---------ATHB51     --------->GLK1(2)<---------ARR14(2)   ----------->HVH21    -       ------->TEIL <---------ATHB12     ------->TEIL    --------->At4g35610--------->ICU4 <---------ANAC58   attggtatgaacggtgtcttcaataatgtagtcagtaggtgtgaatctgttaaaaaagcagttccccttgggtcggaacttatgaccgatgttgcttcca  4538200                    <-------GAMYB                           --------->DAG2                        <--                   <------MYB46(1)                         ---------->DOF2        <---------GLK1(2)       --------->YAB1      <---------ANAC58             --------->ANAC58        <---------ATHB12  ---      <---------ATHB12     <---------ANAC58             --------->ANAC46 <----------DOF2     <-------    --------->WOX13(1)     <---------ANAC46             --------->ANAC58<---------ANAC58------------- ------>TEIL       <------MYB83                    ----------->HVH21    <---------ANAC58<----------DOF2   tgaactcaatcatgtagtagtgggttattgctcggactattccactgtttggaatgacacgaaaagttgcgatttctttccattgattctctttgagctt  4538300                                                                                               ------                                                                                               ------                                                                                              -------                              --------->YAB1                                                  <------                    <---------AHL20(1)                                                        -------                    --------->AHL20(1)                                       <---------At4g35610 -------HSFB2a(2)   <---------ARR11(3)                                       --------->At4g35610<---- ------>HSFB2a(2)   --------->ARR11(3)                       ----------->RAV1(1)      <------ZmHOX2a(1) --At4g35610       --------->RVE1(1)                   --------->YAB1      --------->ZAT18  --------- -------->WRI1     --------->CCA1(1)          <---------GLK1(1)        <---------MYB46(3)   <--------   atcgaagtaacattgagaaaaatatctttcgattatagcttcaatttgaattccctatgaaaacaacatttggagggtgagctatataggaaataagata  4538400    ----------->GT1   --------->DAG2   <---------TOE2(3)   <---------TOE1(3) --->CCA1(2) --->ARR14(1) -->ARR14(2)                                                                     <---------MYB52(1) ---ARR14(2)    <---------ANAC58                        ---------->DOF2        <---------ANAC58 -->ARR11(1)    <---------ANAC58                <---------ATHB12   <---------MYB52(1)            <--- ---TEIL   <---------ICU4  ----------->GT1    ------>MYB83         --------->LBD16           <------- -->ARR10<---------ANAC55(2) ----------->GT1  ------>MYB46(1)     --------->ANAC46   --------->ZAT6 -------AtSPL8  <---------ANAC46            --------->MYB46(3) -------->P      <---------ANAC58 <----   cgaataaggttaagtatgacttgtaagaagagtgaaaattccattacccactcatcgacaaagacaacccgtagttcaaatgcgttatctctataaaacc  4538500                                                                            --------->ANAC46                                                                            --------->ANAC58                                                                            --------->ANAC58                                                                         --------->ARR14(2)                                                                         <---------ARR14(2)  --------                                                                    <------NtERF2           <--------   <---------TOE1(2)                                               ------>NtERF2            <--------   ------->TEIL                                                    <---------RAP2.6(3)     <---------LBD16  <-----------GT1    --------->ZAT6                   --------->O2<---------ANAC46       <---------ARR14(2) -------DOF2    --------->TOE2(3)                <----------ID1   <---------bZIP60(1)   <---------GLK1(1) ----GT1        --------->TOE1(3)           ---------->DOF2       ----------->GT1 ----------->GT1 <-- -----DAG2      --------->YAB1            <---------YAB1          --------->RAP2.6(2)*TSS--------->ARR14(2)   ttttgtacgttctaagaaccataacacaaatcgtccatccagttatgaaaggagacaagtcgcaaatgccgtcaaaatacgccatggtgaaattccgcgt  4538600                            <---------ARR11(3)                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            <---------ANAC58                      >>>>>>>>>ARR2                                             <---------YAB1                --------->AHL20(1)                                             <-----------TBP                <---------AHL20(1)                                     --------->ATERF1(1)       --------->AHL20(2)   --------->ARR11(3)                        --------->ZAT2   <---------ANAC58     ----------->GT1  <------------CBF                                <---------ATERF1(1)    --------->DAG2   --------->ATHB12                                 <---------ZAT2   <---------ANAC46   ---------->DOF2  <---------YAB1                                    --------->At4g35610 ->LBD16        --------->ARR11(3)                       --------->LBD16--------->DEAR3(1) -ANAC58   --------->AHL20(2)                           --------->HSFB2a(2)  <---------MYB52(1) -ANAC58   <---------AHL20(2) ------>ZmHOX2a(2)         <---------HSFB2a(2) <---------RAP2.6(3) --------DOF2  <---------AHL20(2)   <---------MYB52(1) <---------LBD16<---------At4g35610 <----------   ctttgaaaagtaaataaatattttgattgtgatcttctgtttgtgagagtttagccttcgggagtttatgggagcagccgtttttataggcgtattgaat  4538700                        <---------MYB52(1)                       --------->At5g28300                   <-----------GT1                --------->CCA1(2)               --------->ARR14(2)               <-----------ARR10               <---------ARR14(2)             ----------->GT1                                                             <-------GAMYB             <------NtERF2                                                             *TSS             --------->LBD16      --------->MYB52(2)                           --------->RAP2.6(2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            --------->At4g35610  <--            <---------ANAC46    <---------MYB52(1)                  <-----------GT1 <-----------RAV1(1)     <------------CBF ----------->GT1 ----------->GT1            <------------CBF<---------MYB52(1) -    --------->ATHB12<---------At5g28300                         --------->ATHB12<---------RAP2.6(3) - --CBF     <---------LBD16      <--------P--------->WOX13(1)  <----------DOF2<---------At4g35610  ---   cgttgttaattgggccggatataaccgttaatcggttagtcagtaaatcaaatggaacttcaagctttattgacaactcagccgtaatgtgggttaactc  4538800                                                                              <---------ANAC58                                                                    --------->ANAC55(1)                                                                    --------->ANAC58                                                                    --------->ANAC58                                  --------->ARR14(2)                =============================bZIP_DOF                                 <---------MYB52(1)                 --------->ANAC55(2)                               --------->RAP2.6(2)                  <---------TGA1a                               --------->ANAC46                     --------->bZIP60(2)                       ------>MYB46(1)                              --------->O2                       ------>MYB83                                 <---------ANAC55(2)                     <---------MYB111(1)                       --------->ANAC58     --------------->AtSPL3 --------->DEAR3(1)                 --------->ANAC58     --------->ZAT6  --------->MYB46(3)                     --------->At5g28300  ----------->HVH21  <---------MYB55(2)                    ----------->GT1    <---------ANAC58 <---------RAP2.6(3) <---------MYB46(2)          <---------ANAC58   <---------O2 --------->At5g28300 --------->AtMYB61           <---------ANAC58   --------->TGA1a -------At4g35610    <---------MYB111(2)      <----------DOF2 --------->SPL7  <---------ANAC46 -------->RAP2.6(2) --------->ANAC58          ================================bZIP_DOF -------->ANAC46    --------->ANAC58 --------->TOE1(2)  --------->MYB52(1)<---------DAG2 ------>At4g35610  ------>NtERF2 ----------->HVH21 ------>ZmHOX2a(1)--------->ANAC46  <----------DOF2   agccgtaacagtacaatttgccaccaaacacagccgtaacctagaaaactttcctgccaaacggtaagacacgtaacctttcgtattcctttacctgtct  4538900                                                                             <---------RAP2.6(3)                                                                             ------>NtERF2                                                                            --------->ANAC46                                                                            --------->ATERF1(2)                                                                    <---------AHL20(2)                                                                   <---------AHL20(1)                                                                   --------->AHL20(2)                                             <---------ANAC58      --------->AHL20(1)                                             <---------ANAC58      <---------AHL20(2)                                             <---------ANAC46      <---------ARR11(3)                                    <---------ANAC55(2)    <---------RAP2.6(3)                                    --------->ANAC55(2)    --------->At5g28300<------NtERF2                                    <---------ANAC58      --------->RAP2.6(2)--------->LBD16                                    <---------ANAC58    <---------At4g35610 <---------ATERF1(2)                                    <---------ANAC55(1) --------->At4g35610 --------->RAP2.6(2)                                  <-----------GT1   XXXXXXXXXXXXXXXXXXXX>MIR170       <---------YAB1          ----------->GT1 <---------ZAT6      --------->ARR11(3)    ----------->GT1    <---------YAB1     ----------->GT1   <---------ANAC58 --------->ANAC46  --------->DEAR3(1) <---------AHL20(2)    --------->YAB1    <---------ANAC58 ----------->GT1  <---------RAP2.6(2)      <   tattttataattcttgacaactcagtcgtaacattgttacatgtcttgagtgtaactcagccgtaacaatatattttgccgccaaactcaaatgtaacat  4539000                               <---------HSFB2a(1)                               --------->HSFB2a(1)                     --------->ANAC58                     ----------->ARR10                     --------->ANAC58              --------->MYB52(1) <----------DOF2           >>>>>>>>>E2Fd     <---------ARR14(2)           >>>>>>>>>E2Fc     --------->ARR14(2)          --------->LBD16 --------->ANAC58          ------>NtERF2   --------->ANAC58         --------->ANAC58 --------->ANAC46         <<<<<<<<<<E2Fa   --------->ANAC55(1)         --------->ANAC46 --------->ANAC55(2)         --------->ANAC58 <---------ANAC55(2)        <---------LBD16  <---------LBD16        <---------ANAC58                   <---------YAB1    <----------DOF2 --------->SPL7           <---------MYB52(1)        <-----------GT1   <---------DAG2 --------->At5g28300       <----------DOF2  <-----------GT1  <---------At4g35610 -----------GT1  ----------->GT1<---------DAG2  <---------ANAC58      <<<<<<<<<MYB98<---------ICU4   agaaacctttcccgccaaacggtaagacacggaaccttttgtattcctttacttgttttttttttactatatgttacttcatctcatcatttacaggtct  4539100  Previous    Next  AGI:  At2g11360.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24900.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) Range:  from: 4537975    to: 4538585    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g11370.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30590.1) Range:  from: 4538787    to: 4539393    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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