Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   ------>NtERF2            <---------ARR14(2)                   --------->HSFB2a(2)            --------->KAN4(2)                    --------->LBD16            --------->ARR14(2)                  <---------ANAC46          --------->ARR14(2)               <---------ATERF1(1)          <---------ARR11(3)               <xxxxxxxxxxxxxxxxsmallRNA(i)          <---------ARR14(2)              <xxxxxxxxxxxxxxxxsmallRNA(i)         xxxxxxxxxxxxxxxx>smallRNA(i)   --------->ARR14(2)       --------->LBD16                  <-----------HVH21       ------>ZmHOX2a(1)                <---------ARR14(2)       --------->HSFB2a(2)        <---------GLK1(1)     xxxxxxxxxxxxxxxx>smallRNA(s) --------->CCA1(2)     xxxxxxxxxxxxxxxx>smallRNA(i) --------->GLK1(1)    <-----------ARR10     ----------->RAV1(2)      --------->LBD16  <---------LBD16    xxxxxxxxxxxxxxxx>smallRNA(s) --------->ARR11(3)    <---------ARR11(3)    xxxxxxxxxxxxxxxx>smallRNA(i) <---------ARR11(3)    --------->ARR11(3)    ------>ZmHOX2a(1)       <xxxxxxxxxxxxxxxxsmallRNA(s)  ------>ZmHOX2a(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        <---------CCA1(2) <------ZmHOX2a(2)        <---------ARR14(2)<---------At4g35610                  xxxxxxxxxxxxxxxxxxxx -------->ARR14(2)        --------->ARR14(2)--------->At4g35610                  <xxxxxxxxxxxxxxxxxxx -------->ARR14(3)       --------->At4g35610<------NtERF2                     <-------GAMYB ---------ARR11(3)       <---------At4g35610xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------ARR14(3)       <---------GLK1(1)<xxxxxxxxxxxxxxxxsmallRNA(s)       ----------->GT1 -------->ARR11(3)      ----------->ARR10 <-------TEIL<---------CCA1(2)      <---------MYB46(3) ---------ARR14(2)      <---------MYB46(3)<---------ZAT18                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------->GLK1(1)      <---------ZAT18  xxxxxxxxxxxxxxxx>smallRNA(i)      <---------TOE2(2) --------GLK1(1)    <------NtERF2xxxxxxxxxxxxxxxx>smallRNA(i) <---------ICU4 --------->MYB111(2) -------->ARR10     --------->ANAC58<xxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------TOE1(2) ---->LBD16<---------GLK1(1)xxxxxxxxxxxxxxxx>smallRNA(s)      --------->YAB1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----ANAC46<----------TaMYB80<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      ------>ZmHOX2a(1)  <--------- -->At4g35610       --------->ANAC58<xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---LBD16<xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i)<---------ICU4<---------YAB1     ---   gagatcctcctggatattcggcagggcagttccgagatatcaggtccgctccgcgaatatctcatcatcagttcctaggttgttattcgcttatctccct  4498000                                                           <---------ANAC58                        --                 ----------->RAV1(2)                       <---------ANAC58         <------MYB83  xxx              <----------DOF2                             <-------TEIL              <------MYB46(1)<-             <---------ANAC58                          <---------ZAT2               <---------ANAC58             <---------ANAC58                       <---------At4g35610             <---------ANAC46        <---------bZIP60(2)                    <---------PCF2                       <---------ANAC58     ----------->HVH21                    <-----------RAV1(1)                      --------->MYB111(1)     --------->WRKY38(1)                 <---------ARR14(2)<---------ANAC46        <---------AtMYB61   <---------ANAC55(2)                 xxxxxxxxxxxxxxxx>smallRNA(i)                --------->MYB111(2)   <---------At4g35610                <---------ANAC46 --------->ZAT2              <---------MYB46(3)   --------->ANAC55(2)                <---------ANAC58 --------->At4g35610         --------->MYB55(2)   --------->At4g35610                <---------ANAC58 <---------At4g35610     <------MYB83<--------- <-----------RAV1(2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <------MYB46(1)   ---- xxx>smallRNA(fl3)         --------->ARR14(2)--------->ZAT18          <---------ALFIN1 <---------ZAT18 xxxxsmallRNA(si3)         <---------ARR14(2)<---------ZAT18  --------->SPL7  <---------MYB46(3)<xxxx --GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------RAP2.3(3)  --------->ZAT18  --------->MYB46(2) ------>REM1(1) <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------ANAC46 <------   tcatcaggtgaccgggcttatctggcccaaatacccattcgcgtatgtgggctcatcagctgcgtaagtcccctacttggtgggtttggtgggcttttgt  4498100       <------MYB46(1)    <---------ANAC58                       <---------At4g35610    <---------ANAC46         <---------HSFB2a(2)    --------------------->WRI1  <---------ANAC46  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------ANAC58         --------->HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------GLK1(1) ------->At4g35610           ------>ZmHOX2a(1)  ----------->RAV1(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->GLK1(1)       <---------ALFIN1                   ----- --------At4g35610          <---------LBD16<---------ZAT2  <---------ALFIN1                    ------ -DOF2 <------MYB83      <---------GLK1(1) --------->At4g35610         <---------ANAC58        <----- ----->ZAT18       <---------At4g35610     --------->ZAT2 ------>NtERF2<---------ANAC58      -------- xxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------ANAC46      <------- -----RAV1(1)      --------->At4g35610<---------ARR14(2)  --------->ANAC46          <xxxxxxxxxxxxxxxx   gggctggcttggtattttcgcagatggattcctggagggaaatccagctccaacatttgccccccagcccattgagtgagtaggcgaactcgatgagcgg  4498200         <---------ANAC55(2)         --------->ZAT2         <---------At4g35610         --------->TGA1a         --------->At4g35610         --------->O2         <---------ZAT2         <---------O2                                                  <------ZmHOX2a(1)        >>>>>>>GRF7                                                  <---------TOE1(3)       <-----------RAV1(2)                                           <---------TOE2(3)     <-----------HVH21     <---------YAB1                     <------MYB46(1) ->NtERF2<---------TGA1a<---------ARR11(3)                    <------MYB83 --->ZAT18              --------->ARR11(3)              <------ZmHOX2a(2) ----ZAT18              --------->AHL20(1)              ======================HOX2a_HOX2a--------->MYB52(1) ->At4g35610            <---------AHL20(1)             --------->ARR11(3)               --------->TOE1(2) --At4g35610     ----------->GT1          <---------WOX13(1)<---------MYB52(1)         <---------MYB52(2) xxxxxxxsmallRNA(fl3)  --------->YAB1  <---------YAB1  <---------ARR11(3)    --------->ANAC46      <-   acatatatgtcaggtgagattgcaaaaatattcttgatgagatgatagatgtgataagatcagttggttttgaggataaactcaacaaaacaaacgattt  4498300                                   <---------ANAC55(2)                                   --------->ANAC55(2)                                   --------->ANAC58                                   --------->ANAC58                                   --------->ANAC46                                  <-------TEIL                                                    ---                                 --------->ARR14(1)                                              <xxx                                 --------->CCA1(2)              --------->At4g35610             -----                                --------->ARR11(1)         <---------ETT(2)               --------->SPL7                     --------->ARR11(3)                    *TSS <---------At4g35610     <---------ZAT14                     <---------ARR11(3)                    --------->ZAT18              --------->ZAT14            --------->MYB52(1)  --------->ARR14(2)      <---------bZIP60(2)           <---------At4g35610          ------>ZmHOX2a(1)    <---------GLK1(1)        <---------ANAC46              --------->At4g35610         --------->TOE1(3)    ----------->ARR10    <---------ZAT2                     <--------------         <---------ANAC55(2) <------ZmHOX2a(1)     --------->ZAT2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->TOE2(3)--------->HSFB2a(2)      <---------At4g35610      <---------ANAC58    <----      --------->GLK1(2)   <---------LBD16        xxxxxxxxxxxxxxxx>smallRNA(i)         ---------------     <---------GLK1(2)    <---------HSFB2a(2)    xxxxxxxxxxxxxxxx>smallRNA(s) <---------CCA1(2)------    <---------At4g35610  <---------ANAC46   <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------ANAC58  <xxxxxx --------GLK1(1) ---------->DOF2<---------ARR14(2) --------->At4g35610 --------->ALFIN1 <---------SPL7   gatttcagattccttaactgaaagatttcgaggagatacgcgagataagtcgctgctgatgtggacaactgagatggagcgtctcttcagcgtaccgcat  4498400                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                =====                                                                                                -----                                                                                                =====                                                                                                -----                                                                                                <----                                                                                                -----                                                                                             --------                                                                                            <--------                                                                                           <<<<<<<<<<HY5                                                                                           ==========                                                                                           <---------TGA2(1)                                                                                           <---------TGA1a                                                                                           --------->TGA2(1)                                                                                           --------->TGA1a                                                                                           <---------O2                                                                                           --------->ANAC46                                                                                           --------->O2                                                                                           --------->ANAC55(2)                             ------>ZmHOX2a(2)                                             --------->bZIP60(2)                            <---------GLK1(1)                                              <---------bZIP60(1)           <-----------RAV1(2)          ----------->GT1                                 ----------->HVH21          <------ZmHOX2a(2) --------->GLK1(1)                                  <---------ALFIN1 <---- -------->HVH21           --------->GLK1(1)                     --------->AHL20(2)    --------->O2 <- xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------HSFB2a(2)    ======================================= ---->At4g35610      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    =======================================bZIP_DOF -AtSPL3 --------->ARR14(2)<---------ARR11(3)                 <----------DOF2  --------->AtMYB61<---- -----At4g35610  <------NtERF2   --------->ZAT14           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ----- >AtSPL8 <---------ARR14(2)--------->ARR11(3)           <---------ICU4        --------->O2 --------->bZIP60(1) ->TEIL  <-----------HVH21<---------GLK1(1)            --------->ICU4       <---------ALFIN1<-------- xxxxxxxxxxxxxxsmallRNA(si3)<------ZmHOX2a(2)          <---------YAB1<-----------GT1<---------ALFIN1   ctgacagtccagatcaggcgcagagaagagatctctgcaatctcgaaaattgtggtgatgatggctttaaataacttcccacctctccacttgacgtcac  4498500      --------->ANAC46   ------->GAMYB --------->At4g35610 <---------At4g35610 --------HVH21 ---->ANAC58 -----ANAC55(2) ---->ANAC55(2) ---->ANAC58 ---->ANAC46 ==========MYC_MYB ---->bZIP60(1) =============================================bZIP_DOF ---->TGA1a -----O2--------->ANAC46 ---->O2--------->ANAC58 ->TGA2(2)                                     <---------ANAC46                       <-----------GT1 ---TGA1--------->ANAC58                       <---------ANAC58           --------->ARR11(3) ==========MYC_MYB                             <---------ANAC58           --------->GLK1(2) -----TGA1a                                  <---------At5g28300          <---------ARR11(3) --------WRKY12                             <-----------GT1              --------->CCA1(1) =====bZIP_DOF                          --------->AHL20(2)               --------->RVE1(1) -----bZIP60(1)                        <---------YAB1                  --------->AHL20(2)<----------DOF2 ---->bZIP60(2)                    <----------DOF2              ----------->GT1   <----------DOF2 ---HVH21                       ------>ZmHOX2a(1)             ---------->DOF2   ---------->ID1   gtcaactcacacgactctcaaggtaacttctctcctcctttattatttaccgtgttttgttttgtaaagataaaaaaatctcgtcttttttcttttggta  4498600                                <---------ARR14(2)                             --------->HSFB2a(2)                 <---------ALFIN1 ------>ZmHOX2a(2)                 ---------->ID1             <---------At4g35610--------->ARR14(2)         <---------CCA1(2)           ---------->DOF2   <---------TOE1(2)         <---------HSFB2a(2)      <----------DOF2  ------>ZmHOX2a(1)  ------>ZmHOX2a(1)      <----------DOF2  <----------DOF2  <---------At4g35610 <---------ETT(2)   tctccttcgtttctctgctactcccctctttctcgatctgccctctttgctgttttctttcatctctctcgtccttctctgtcgaaacccaaagatgagc  4498700                                                                                   --------->LBD16                                                                                 <------NtERF2                                                                                 --------->RAP2.3(1)                                                                                 --------->ATERF1(1)                                                                                <---------ATERF1(1)                                                                                ------>NtERF2                                                                                <---------RAP2.3(1)                                                                                --------->ABI4(1)                                                                               --------->DEAR3(1)                                                                               --------->RAP2.3(3)                                                                               --------->ANAC46                                                                               --------->RAP2.3(2)                                                                               <---------DEAR3(1)                                                                               <---------ATERF1(2)                                                                               --------->ATERF1(2)                                                                              --------->RAP2.6(1)                                                                              --------->RRTF1(1)                                                                              --------->ORA47(2)                                                                              --------->DEAR4(2)                                                                              --------->RAP2.3(1)                                                                              --------->ERF1                                                                              <------NtERF2                                                                              --------->ATERF1(1)                                                                             <---------RAP2.3(1)                                                                             ------>NtERF2                                                                             <---------ATERF1(1)                                                                            <---------DEAR3(1)                                                                           --------->RAP2.3(1)                                                                           <------NtERF2                                                                           --------->ATERF1(1)                                                                          <-----------HVH21                                                                          ------>NtERF2                                                                          <---------ATERF1(1)                                                                          <---------RAP2.3(1)                                                                         --------->bZIP60(1)                                                                         --------->DEAR3(1)                                                                         <---------ANAC58                                                                         <---------bZIP60(1)                                                                         <---------DEAR3(1)                                                                         <---------ANAC46                                                                         <---------O2                                                                         --------->O2                                                                         <---------ANAC58                                                                        --------->RRTF1(1)                                                                        --------->ATERF1(1)                                                                        <------NtERF2                                                                        --------->RAP2.3(1)                                                                       <---------RRTF1(1)                                                                       <---------ERF1                                                                       <---------ORA47(2)                                                                       <---------RAP2.3(1)                                                                       <---------DEAR4(2)                                                                       <---------RAP2.6(1)                                                                       ------>NtERF2                                                                       <---------ATERF1(1)                                                                      <---------RAP2.3(3)                                                                      <---------RAP2.3(2)                                                                      <---------DEAR3(1)                                                                      --------->DEAR3(1)                                                                     <---------At4g35610                                                                     --------->At4g35610                                                                     --------->ATERF1(1)                                                                     <------NtERF2 <------NtERF2                                                                     <---------ABI4(1)                     --------->ANAC58                               <---------ATERF1(1)                     --------->ANAC58                               <---------ORA47(2)                     --------->ANAC46                               <---------DEAR3(2)                   ---------->DOF2---------->DOF2                   <---------RAP2.3(1)           ---               --------->YAB1     <---------At5g28300              <---------DEAR3(1)             ---        --------->GLK1(2)  ------->GAMYB                           <---------DREB2C(2)     ----------      --------->HSFC1(2)   --------->AtMYB61                      <---------ORA47(1)     --------->ZAT18      <---------HSFC1(2)   ----------->RAV1(1)                    --------->ALFIN1 ------>NtERF2  ---      <---------HSFB2a(1) --------->MYB46(3)                     <-----------HVH21--------->DEAR3(1)      --------->HSFB2a(1)-------->P   --------->DEAR3(1) <---------HSFB2a(2)--------->DEAR3(1)    --- <---------------------WRI1------------>AtMYB77      <---------SPL7<---------DEAR4(1)    <---------ZAT14   gacttcgaagattccaagaataaaagcaaccacagttacagcgacgatgagagttcgtccgagacgaggtcggcggcgtcgccgccgcgagtgcaaagac  4498800                                         -------->P                                        --------->WOX13(1)                                       <---------WRKY12                                      --------->WRKY18(1)                                      <------NtERF2                                     ------>NtERF2                                     <-----------HVH21                                    <---------ATERF1(2)                                    --------->RRTF1(3)                                    --------->ATERF1(2)                                    --------->DEAR3(1)                                    --------->RAP2.6(2)                                    --------->RAP2.3(2)                                    --------->RRTF1(2)                                    --------->RAP2.3(3)                                   --------->ERF1                                   --------->RRTF1(1)                                        --------                                  <---------ATERF1(1)                                        --------     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   --------    <---------ICU4                --------->At4g35610                                     <------NtERF2   --------->ICU4                 <---------At4g35610                         --------->ANAC58     --   <---------YAB1                 <------NtERF2                      --------->DAG2       --------->ATERF1(1) ------>ANAC58                    ------>NtERF2           ---------->DOF2     --------->AtLEC2   <--- ------>ANAC46                  --------->SPL7        --------->ANAC58        --------->ANAC46   ---- >DOF2                        <-----------HVH21       --------->ANAC46        --------->ANAC58  ----- ------>bZIP60(2)             <---------SPL7     <---------ETT(2)  ---------->DOF2   --------->ALFIN1 ------>ANAC58       <---------PCF2--------->RAP2.3(1)--------->ANAC58    ------>NtERF2<------ZmHOX2a(1)   gcgtcataattttaggcagaatgggtccaattcgtccgccgtcaaccagagtcgacaagccaaagaagaaaaaggctgccaagcaaggaggaggcacgcc  4498900  Previous    Next  AGI:  At2g11300.1    Description:  transposable element gene. pseudogene, hypothetical protein, similar to GB:AAD38224 Range:  from: 4498359    to: 4501036    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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