Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->REM1(2)                                         --------->AtMYB61                         --------->ZAT14         <---------MYB46(3)             --------->MYB46(3)                        --------->ALFIN1         ----------->GT1               --------->ANAC58                          --------->LBD16        --------->ALFIN1   -------->P  --------->ANAC58                         --------->DEAR3(1) -------->ALFIN1          --------->WOX13(1)                                    <---------ANAC46 ----->MYC3              <---------WRKY38(1)                                  <------NtERF2 ----->MYC2             --------->WRKY18(1)                                 --------->SPL7------>ZmHOX2a(1) ------MYC3       ------->TEIL  <---------ARR14(2)                        <-----------HVH21     ----- ------MYC2  ---------->DOF2    --------->ARR14(2)        <---------At5g28300 ------>NtERF2     <----   acgtggggaagtggttaaagaacctagtcaaccagttactcaaccaatacgacctgtattcactgcgactcagactcgtccgccgtggagtcctactggt  4495800                                                              --------->ICU4                                                      --------->ANAC58               --------->At4g35610                    --------->ANAC58               --------->ZAT2                         --------->ANAC46               <---------At4g35610                 <---------ARR14(2)               <---------ZAT2                      --------->ARR14(2)          --------->ANAC58                      --------->TOE1(1)     <---------ZAT6<---------ANAC58          --------->ANAC58                      --------->TOE2(1)<---------REM1(1)  <---------ANAC46 <---------ANAC46                              ------>ZmHOX2a(1) <---------ANAC46   <---------ANAC58 ---->ARR14(2) <------NtERF2            <---------ANAC58    <---------ICU4         <-------TEIL -----ARR14(2)----------->RAV1(1)       <---------ANAC58   --------->ICU4     <---------------------WRI1   tctgcgtctagtaagccagcagagacaagtccgaagtcatttgctcgtcctcgtatacgacataatgatgtagagttggatgcgatgcgtagtatgggaa  4495900                                                                <<<<<<<<<<<<<<<<<LFY                                                         --------->LBD16                                                        <---------ANAC58                                                        <---------ANAC55(1)                                                        <---------ANAC46                                     ------->TEIL       <---------ANAC58                                  <---------YAB1       <---------LBD16                              ------>NtERF2           --------->ALFIN1       ----------->GT1                         <-----------RAV1(2)        <---------GLK1(1) <---------MYB46(3)                         <---------LBD16   ------>ZmHOX2a(1)   ----------->HVH21  <---------YAB1<----           ---------->DOF2 <---------At4g35610    <------ZmHOX2a(1)  --------->ALFIN1           -----   tttgtttcaaatgcaaagggaagtatttcaggggccatgaatgtcctatgaaggagttgcgggtattgacagtggtgaatggttatgagttggaagtttt  4496000                                      --------->WRKY38(1)                                     ----------------------->TaNAC69(2)                                   <---------ANAC46                              --------->At4g35610                              <---------At4g35610                              <---------ZAT2                               --------->WOX13(1)                             <---------ARR14(2)                          <---------YAB1     --------->ARR14(2)      --------->ARR14(2)                      <----------DOF2     --------->GLK1(2)      <------ZmHOX2a(1)                    <---------ZAT18     <---------ARR14(2)   --------->ALFIN1                      <---------ANAC58       <-----------RAV1(1) -----HSFB2a(2)          <------ZmHOX2a(1)                      <---------ANAC58       <---------MYB46(3) ---->HSFB2a(2) --------->ICU4--------->ZAT2    ----------->RAV1(1)  <---------DAG2 <----------DOF2   ggaagagaatatggtggaatgcttagaggaggagctggtgttgactcttgccacaaaacttgaattgcgaactttatcattcaactcttttgttggatta  4496100                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                    --------->ALFIN1                                                                 <---------ANAC58                                                                 <---------DEAR3(1)                                                                 <---------ANAC58                                                              <---------WOX13(1)                                                             <---------ANAC58                                                             <---------ANAC58                                                          <---------WOX13(1)                                                         <------------CBF                                            ----------->GT1  <------------CBF                       <                                           <---------TOE2(3)--------->ATHB12                        -                               <---------WOX13(1)       --------->ATHB12    ------------>CBF        <                              --------->ARR14(2)       <---------YAB1--------->ABI4(2)           ----                             --------->ATHB12    --------->ICU4 <---------LBD16             ------>ZmHOX2a(1)   cattctccaagaacaactaaattggtgggatggattggcaaaactaaggtgatttttatgattgattgcggtgcttctcacaatttcattactcctacta  4496200                                          *TSS      ----------->GT1              <---------ANAC46    ------->GAMYB                  <------MYB83  --------->ANAC58                 <---------ANAC58  --------->ANAC58                 <---------ANAC58 ------->GAMYB                     <------MYB46(1) ---------MYB111(2)               --------->MYB59                                                 <-- -------->MYB46(3)             --------->ZAT2                              <---------ARR11(3)     --- ---------MYB55(2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ARR11(3)    ---- ----->REM1(1)--------->TOE2(3)<---------ZAT2   <----------DOF2   ------>ZmHOX2a(1)              <---   caacaaccaagttaaacatcaaaacgcagagcgagttgggtttggatgtgctattgggtaatggagtcctagtacaaggtattggcacttgtagagatgt  4496300      <-------GAMYB                                                                  <--------P      <---------ANAC58                                                             <---------MYB46(3)      <---------ANAC58                       --------->ZAT14                  <---------ZAT14 -------------AGL15                   ---------->ID1                   ------>ZmHOX2a(1)         <--- ------------>AGL15                 <-----------RAV1(1)                <---------LBD16 <------MYB83 ------------->AGL1               <----------DOF2--------->ALFIN1     --------->TOE1(2)<------MYB46(1) --------------AGL2      <---------LBD16     <---------ZAT14  <---------TOE2(3)    --------->ATHB12   ccattttgggttgtctcaccttgcatttcagggtgactttgtcgcactggagttgggaagtattgatgtaatcctcggagtacaatggttggaaaccttg  4496400        <---------ANAC46        <------MYB83        <------MYB46(1)       <---------AtMYB61       --------->MYB111(1)                            <--------P       <---------MYB46(3)                           ----------->GT1       --------->MYB55(2)                           <---------MYB46(3)       --------->MYB111(2)                          <------MYB83       --------->MYB46(2)                           <------MYB46(1)         <----------DOF2        <-    --------->ATHB12       <------ZmHOX2a(1)  --------->DAG2               <---------DAG2      <----- ------ANAC46<---------ANAC46    ------->TEIL---------->DOF2           ----------->HVH21       <-----   ggtaaatgtttggtggattggaagttacaggaatggacgtttatgtataaagggaggttagtacatttgaagggtgacctttcccttcatgagtctcctt  4496500                                                     <---------ZAT2                                                     --------->ZAT2                                            <---------ARR14(2)                                 <---------ANAC58    <---------At4g35610                      <---------ZAT18       --------->ARR14(2)                    --------->ZAT2          --------->ARR11(3)                    --------->ATERF1(1)     <---------ARR11(3)                    <---------At4g35610    <------ZmHOX2a(1)----------->HVH21                    --------->At4g35610  <---------TOE1(2) <----------CDC5                    <---------ZAT2       <---------TOE2(2)--------->At4g35610                    <------NtERF2<---------ANAC58    --------->At4g35610 --------->TOE2(3) <---------ATERF1(1)  ------>ZmHOX2a(1) <---------At4g35610 --------YAB1      <<<<<<<<<AtERF-4    --------->TOE1(2)--------->ZAT18         <---------ZAT2  ----- -----DOF2         <<<<<<<<<AtERF-3 --------->ZAT18 --------->MYB52(2)          <---------At4g35610 - ----DAG2    <-----------RAV1(1) <---------ANAC46 <---------MYB52(1)  ----------->HVH21   --------->ZAT6   tatccttgaagtctcttgtggcagctccctcaattgggtgtcctaggatattgttagctgcgctgaagggaagtgaccctccagctactctatctctagt  4496600        ----------->HVH21    <---------ZAT2    <---------At4g35610                                            <---------ARR14(2)    --------->ZAT2                                                 --------->ARR14(2)   ------>ZmHOX2a(1)                                             --------->AtMYB61 ----------->RAV1(2)                                        -------->P ---->ARR14(2)   ----------->GT1                         <---------ANAC58                           - ----->ZmHOX2a(1)<---------MYB46(3)                      <---------ANAC58 <-----------HVH21        --   tcctcctgctgtgactgagttgttaaacaagtttccacaggtttttgcaatgccttctggcttaccacctatacggtgtcaagagcatgcgattaccttg  4496700  Previous    Next  AGI:  At2g11290.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 1.2e-92 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica) Range:  from: 4496242    to: 4497776    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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