Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          ----------------->AG                                           <----------DOF2 ---------YAB1                                                      <---------ARR11(3) ------>YAB1                --------->GLK1(2) --------->ARR11(3)  <---------MYB52(1) -------ICU4--------->ARR14(2)             <---------TOE2(3)      --------->DOF5.7(2) ------ATHB12    <---------MYB52(1)      ---------->DOF2        --------->YAB1       ---------->DOF2 ----->ICU4 <---------ARR14(2)        --------->YAB1 --------------------->WRI1 ----------->GT1 ------ATHB51 <-------TEIL <---------GLK1(2) <------ZmHOX2a(1)------->TEIL   <---------AtLEC2   ttatgagttttccaaattcgtttttttcagaatttgagagtcataaaggattttgtattgaacgaatcgttatcttttagcatggctaaaagggccttct  4491400                                                                                                    -                                    <------MYB46(1)                ------>MYB83                     <              --------->AHL20(2)    <------MYB83                   ------>MYB46(1)            <------          ----------->GT1        <---------ANAC58                <---------MYB59       --------->ZAT18        <---------ANAC58         <---------ANAC58        --------->AHL20(2)           --------->ALFIN1        <---------ANAC58       <---------YAB1--------->SPL7   <-----------GT1      --------->DAG2   <      <---------AHL20(2) <---------YAB1      ------->TEIL<---------AHL20(2)       ---------->DOF2   <   tgtgccatttacttgttaaaatacaatttgattatgcttggtctctgtacgttctgtttttaaataaccaaactcagtgatcaataaagtgtgccagtga  4491500                                 --------->TOE2(2)                                                 --                                 --------->TOE1(2)                                           <-------           <---------ANAC58     --------->YAB1                                              --------- -------->ANAC55(2)         <---------AHL20(2)                                             <---------YAB1 ---------ANAC55(2)     --------->ICU4                                                    <<<<<<<<<<< ---ATHB12 <---------ANAC58 --------->AHL20(2)         ----------->GT1                  ----------->HVH21 ---------ANAC58       --------->At5g28300      --------->YAB1                        --------->ANAC55(2) ---------ANAC58--------->ARR14(2)          <------ZmHOX2a(1)                         <---------ANAC55(2)   ttacttgatgtttccttgaattcgcagtaattaaacataagagttaggagtcataaacagttaagaggtagaagaaagtttgagaaataagtgaccattg  4491600                                                     ----------->GT1                                                     <---------ANAC46                                                     --------->ALFIN1                            <---     <----------DOF2                                 <---------REM1(1)                  --------->ATHB12     <---------DAG2                                <---------ANAC46        ---------->DOF2<---------YAB1 ------->CCA1(2)                                  <---------TOE2(3)       --------->AHL20(2) <------- -----CBF                   ----------->HVH21<----------DOF2     ------->GAMYB         <---------YAB1 >ATHB12                <------------CBF  <---------ARR11(3)  ----------->RAV1(1)      --------->ICU4 <<<<<<LFY            <---------YAB1      --------->ARR11(3)  --------->MYB52(1)     --------->YAB1   gatacaactttttctgtttgaaatgttattgtgaccgagggacaaatcttttgaggtgtagaaacaacagagtcgattaaagagttatagtgattaatgc  4491700                                                                                      --------->ARR14(2)                                                                                      <---------ARR14(2)                                                                               <---------ANAC58                <------ZmHOX2a(1)                                          <----------DOF2 <---------ANAC46                  ------>ZmHOX2a(1)      <---------WRKY12<---------ANAC58  <-------- <---------ANAC58               ------>ZmHOX2a(1)         <---------WRKY38(1)  <---------ANAC46 <---------ANAC58             ------>ZmHOX2a(2)          --------->WRKY18(1)   <---------ANAC58<----- -------DOF2    =====================HOX2a_HOX2a         ------------>CBF <---------ANAC58  <-------- --TOE2(3) <----------DOF2  <---------ARR11(3)  ---------->DOF2     --------------------->WRI1-------   tttgcgtagttgtctttaggaaatgttcttgatcctcctctctctctcaaaaaagatgggtcaatgttctgtttctgcgtttcgtccatatacttcagga  4491800                              --------->TOE2(3) ---RAV1(2)              <----------DOF2 -ZmHOX2a(1)       --------->KAN4(2)                                            <---------ICU4      - -LBD16           <---------ICU4                                             --------->YAB1       <-- -->LBD16        <---------YAB1      ----------->RAV1(1) xxxxxxxxxxxxxxxxxx>smallRNA(si3)   ---------   aatggtattcagacatttgatcattccctttaacttaaacaacaatagggctattacaccaattcactcttaaaaatactcatcatctcatttttaaaga  4491900                                                                         --------->AHL20(2)                                                                 --------->YAB1                                                                 <---------ICU4                                                                <---------ATHB12                                                             --------->AHL20(2)                                                             <---------AHL20(2)                                                            --------->AHL20(2)                                                         --------->AHL20(2)                                                         <---------AHL20(2)        --------->AHL20(2)                               --------->AHL20(1)        <---------AHL20(2)                              <---------AHL20(2) -------->MYB52(1)   ---------->DOF2                    --------->AHL20(2) <---------CCA1(2) -------MYB52(2)  <---------TOE2(3)             --------->ICU4  --------->ICU4   <---------MYB52(1) ->DOF2--------->AHL20(2)     <---------YAB1    <---------YAB1--------->WOX13(1)--------->TOE2(3) ---   actaacacatttaatttgttaagaaaagacttgtgatttgggatttgataatgcttaaaaaaattaatcatgagattatatcccttaatctctcgtctat  4492000                   <---------ANAC46                   <---------AtLEC2                   <---------ANAC58                   <---------ANAC58                  --------->ATHB12              --------->ATHB12             <---------YAB1         --------->WOX13(1)<------ZmHOX2a(2)       <------ZmHOX2a(2)  <---------ARR11(3)                             <---------AHL20(2)   <---------WOX13(1)     --------->ARR11(3)                             --------->AHL20(2)        -- ------>TOE2(3) <---------WOX13(1)          <---------AHL20(2)      <---------YAB1                <--   ccttgatggatcaatctgattgcttggagatcaaattgtatgtgatttttttttaagtttctacttcgttgtgatttatattgtttctatgttcagggca  4492100                                                                                --------->SPL7                                                                              <---------SPL7                                                                             <---------HSFC1(2)         <---------ZAT6           --------->HSFB2a(2)                        --------->HSFB2a(1)         --------->ICU4           <---------HSFB2a(2)               <----------DOF2 ------->GLK1(1) --------->ARR11(3)                    --------->YAB1        <---------HSFB2a(1) -------ARR14(2) <---------ARR11(3)                    --------->ANAC46   <------ZmHOX2a(1)     -----   gatttcatgtagtgatcaagctcttctctctctattctagagaaacttcatacacaaacacaactttcaactttcaggaccgttcgaagaaactgaaatt  4492200                                                                                          --------->YAB1         <---------HSFB2a(1)                                                       <----------DOF2         --------->HSFB2a(1)    <---------MYB52(1)            <---------YAB1    <---------ARR11(3)        --------->DAG2         <-------GAMYB        <---------TOE2(3)        <----------DOF2 ---->AHL20(2)   --------->ALFIN1             <---------GLK1(2)        ---------->DOF2 <-----------GT1   aaaacatggaaaggttccagtggggaacatcaccgttgatatggtatggattctaatgttttttgtgattacacaaaggctttatcttttaaacatactc  4492300  Previous    Next  AGI:  At2g11270.1    Description:  citrate synthase-related. similar to CSY5 (CITRATE SYNTHASE 5), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G60100.1); similar to citrate synthase [Nicotiana tabacum] (GB:CAA59008.1); contains InterPro domain Citrate synthase-like; (InterPro:IPR002020) Range:  from: 4491802    to: 4492390    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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