Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <---------ARR14(2)          --------->LBD16                                                                         <--          ------>ZmHOX2a(1)                                                                       ---         --------->TOE1(2)                          <---------MYB52(2)                            <--      --------->ARR14(2)               --------->AHL20(2)                                         ---      <---------ARR14(2)               <---------AHL20(2) --------->WOX13(1)                      ---    <------MYB46(1)                   --------->AHL20(2)<---------ATHB12        ---------->ID1   ----    <------MYB83           ------>ZmHOX2a(1)  --------->ETT(2)              <----------DOF2      <---   --------->MYB59        <---------MYB59     <---------ETT(2)           <-----------GT1       ------ -----TOE2(3)  --------->ARR14(2)<----------DOF2 --------->REM1(1)   <----------DOF2 <----------DOF2   gaatgtaggttcctgagaataccctattcctaactctttatttaattgtctacaactaatcaatctactgtctttttactttgttctctttttatttcaa  4469900      --------->ZAT2   <---------ANAC58   <---------ANAC58 ------HAHB4 ------>ATHB12 -------ICU4                                           <---------HSFB2a(2) ----->ATHB1                                           --------->HSFB2a(2) ------>YAB1                                       <----------DOF2 ----->ICU4--------->TOE2(3)  ------->GAMYB     <---------ARR11(3) ------ATHB12               --------->ANAC46    --------->ARR11(3) --->WOX13(1)     <---------HSFB2a(2)       ---------->DOF2      <------ZmHOX2a(2)<---------AHL20(2)   tcattacctgctagcttaatctcgaaatacaactcactgttcgaacaaaagaactttgtagaaatcgatccctaaatactgcaatttatctcttatttga  4470000                                                    --------->ARR11(3)                        --------->TOE1(3)           <---------ARR11(3)                        <---------DAG2          ---------->DOF2                        --------->TOE2(3) <-------GAMYB                      ------->TEIL       <---------MYB46(3)                     <-----------GT1     <---------DEAR3(1)                                  <-------                  --------------->AtSPL8<------NtERF2                             <------MYB83             <------ZmHOX2a(1)        <---------ANAC46                            <------MYB46(1)           <---------TOE1(3)          <---------ANAC58                           --------->MYB59           <---------TOE2(3)          <---------ANAC58                         --------->CCA1(2)<----   gagagtagttcttaaggaaatttgaaccttatcaaatttggcgtcgttgccaaagttcttgggattgagtttagtttagagatttggtctagtttttact  4470100                    <---------ANAC58                    <---------ANAC58                                           ---------->DOF2                    <---------ANAC46                                         --------->ANAC46                  <---------ARR14(2)                            --------->ANAC58                  --------->ARR14(2)                            --------->ANAC58      <------ZmHOX2a(1)               <<<<<<<<CAMTA3                        ------->TEIL          --------->ANAC58             --------->ANAC55(2)                  --------->ALFIN1         --------->ANAC58  <----------DOF2<---------CCA1(2)              <---------At4g35610       --------->ZAT18 ----GT1     --------->ANAC58                 <-----------RAV1(2)         <---------ZAT18    <<<<<<<< ------DOF2  --------->ANAC58   <----------DOF2 --------->At4g35610     --------->At4g35610>>>>>>>>>>WRKY26   tttactttgttactcacgcgtttcttgttttcttcttttttttgtgtttcaggtgtatgtctaggcaaacaaggagcacacaaaagaaggagttgatcaa  4470200                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                               ----------->HVH21               <---------LBD16                                *TSS                      <---------At4g35610        --------->HSFC1(1)                                   <xxxxxxxxxxxxxxxxsmallRNA(s)        <---------HSFB2a(2)                                 <xxxxxxxxxxxxxxxxsmallRNA(s)--------->At4g35610        --------->HSFB2a(2)                            ------------>CBF               <-----------RAV1(2)       <---------LBD16                             --------->ARR11(1)             --------->At4g35610    <---------ZAT14                  ----------->GT1--------->CCA1(2)          <---------ZAT2   ----- <-----------------AGL1    ------->TEIL            <---------GLK1(2)           --------->ZAT2  <----- <<WRKY26   <------------CBF --------->TOE1(2)     --------->ARR14(2)          <---------At4g35610   cttgtctgttctggaattggggaaacttgaacgtagaaaccgaaaaactcatagatttgcaatggctgacagagtcatccaagctgatgcagatggagat  4470300                                                                                             --------                                                                                      <------ZmHOX2a(2)                                                                                     <---------ARR14(2)                                                                                     <xxxxxxxxxxxxxxx                                                                          --------->ANAC58   --------                                                                          --------->ANAC58  <--------                                                                          --------->ANAC46  ------>NtERF2                                                                          --------->RAP2.6(2)<------NtERF2                                                                         --------->SPL7<-----------RAV1(2)                                                                  ----------->RAV1(2)--------->ARR14(2)                                                                 -------->P------>NtERF2    ---------                 --------->ANAC58  <--------P                    ------>MYB83  xxxxxxxxxxxxxxxx>smallRNA(s)            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  --------->MYB52(1) <------ZmHOX2a(1)         <------ZmHOX2a(1)       <------MYB83                    ------>MYB46(1)<---------ATHB12         <xxxxxxxxxxxxxxxxsmallRNA(s)             <---------YAB1------>ZmHOX2a(1)--------->YAB1 <----       <---------TOE2(3)         <------MYB46(1) <---------ARR11(3)     <------ZmHOX2a(1)  <---------ANAC58   --------->CCA1(2)   xxxxxxxxxxxxxxxx>smallRNA(s)             =============================HOX2a_HOX2a ---->CCA1(2)    --------->ANAC58<---------MYB46(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------ANAC58 ----ARR14(2)    <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->ARR11(3)     =====================HOX2a_HOX2a   ttgagagatgaggatgggcaagcctacaatgaggctggttagagattggatgatcatggactcatcctacctgaggacgccaatgaggatcaggcgcgct  4470400                                                    <---------ZAT2                                                    --------->ZAT2                                                    -------->P                                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   --------->MYB55(1)                          --------->ZAT2          --------->AtMYB61                          --------->At4g35610     --------->MYB46(3)                          <---------At4g35610    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxsmallRNA(i)               ------>NtERF2    --------->LBD16       <---------ZAT2       --------->REM1(1)       <---------DAG2   --------->ANAC58     <-----------RAV1(2)  ----------->RAV1(1)     ------>NtERF2   --------->ANAC46   --------->ANAC58      ----------->HVH21--------->ETT(2)   --------->ANAC58   --------->ANAC46  --------->ETT(2)    <------NtERF2 ->ANAC58          --------->ARR14(2)   <---------ANAC58  --------->ALFIN1                        <-- xxxxxxxsmallRNA(se3) --------->ANAC58  <---------ANAC58<---------ANAC58        --------->YAB1    <-- ->ANAC58     ------>NtERF2            <------NtERF2------>MYB46(1) <---------ALFIN1             <--- -ZAT18    --------->ZAT2<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s)               <--- >ZAT18    --------->At4g35610        <-----------HVH21 <---------ANAC58<----------DOF2       ------- ------DOF2<---------At4g35610    <---------DEAR3(1)------>MYB83 <---------ETT(2)          --------->ANAC46   tcaatgcgcaattagctgccagagacgcagcagggctcggtgtcgagcgacaccaactgggtgtcgatcgacacctttgggagcataatgtagacgcgat  4470500                                                                             <-----------TGA1                                                                            <---------ANAC55(2)                                                                            --------->ANAC55(1)                                                                            --------->ANAC58                                                                            --------->ANAC55(2)                                                                            --------->ANAC46                                                                            --------->bZIP60(2)                                                                            --------->bZIP60(1)                                                                            =========================                                                                            <---------bZIP60(1)                                              <---------ANAC58              --------->O2                                            --------->ARR14(2)              <---------O2                                           <---------GLK1(2)                --------->ANAC58                                         <---------TOE1(2)                  --------->TGA1a                                      ================================================MYC_MYB                                    ------>MYB83                           <-----------STF1                                    -------->P<---------ANAC58            <---------ALFIN1                                    ------>MYB46(1)                      --------->MYB46(3)                                   --------->MYB55(1)                  <---------ARR14(2)                                  --------->AtMYB61                    --------->ARR14(2)        ----------->RAV1(1)       <---------MYB55(2)                 --------->LBD16       ----------->HVH21          <---------MYB46(2)               <---------LBD16   <---------ANAC58               --------->MYB46(3)               --------->At4g35610   --------->ETT(2)               <---------MYB111(1)           <---------At4g35610   <---------ANAC58         <---------ETT(2)<---------ARR14(2)  <---------ZAT2  <------NtERF2         --------->ETT(2)<-----------RAV1(2)     --------->ZAT2 ----MYB46(1)          <------NtERF2==================================================MYC_MYB-------- ----MYB83   --------->MYB52(1)   <---------MYB111(2)           --------->At4g35610          <------- ------AtMYB61       --------->ALFIN1 ------->GAMYB             ----------->RAV1(2)        <------ZmHOX2a(1) ------MYB46(3) ------->GAMYB     --------->DEAR3(1)          <-----------RAV1(2)   xxxxxxxxxxxxxxxx>smallRNA(i) -->ATHB12   ----------->RAV1(1)------>NtERF2<-------TEIL   ------>ZmHOX2a(1)<-----------HVH21      -   tggtgtcgagcgacacaacagaggtgtcgatcgacaccaaccccaggttcttgtagctattcctccagctgcggaaccacgtcatactctcgaggatttc  4470600                                             <---------ALFIN1                                          --------->MYB46(3)                                         --------->ANAC46                                      --------->SPL7                                    <---------SPL7               <---------YAB1                                   ------>ZmHOX2a(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)                                   ============================HOX2a_HOX2a                                  =============================HOX2a_HOX2a                              --------->At4g35610   --------->LBD16 --------->At4g35610             -     ----------->HVH21     ====================================HOX2a_HOX2a                      -----    xxxxxxxxxxxxxxxx>smallRNA(s)  <------ZmHOX2a(2)<---------HSFB2a(2)                          ----- =======MYC_MYB            <------ZmHOX2a(2)------>NtERF2      --------->YAB1            <----------DOF2 ->GLK1(1)                <-----------HVH21<---------ALFIN1   --------->ICU4            <---------ANAC58 --GLK1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->HSFB2a(2)<---------REM1(1) <---------ANAC58 ------>GAMYB     --------->YAB1  --------------->AtSPL3<------ZmHOX2a(1)           <----------DOF2 -   aacaggcctgacctgttctatgctaatcgatcagcgatcgtacccccacccttccagaggaacgattatgagatgaagccttgctactttgctttagtag  4470700           <---------AtLEC2       ------>ZmHOX2a(1) <---------ZAT2 --------->At4g35610           >>>>>>>>>>>>>>>>>LFY <---------At4g35610           <<<<<<<<<<<<<<<<<LFY <------NtERF2                --------->RAP2.3(3)                                                 <-- --------->ZAT2             <---------At4g35610                 --------->TOE1(1)              <----- -------->ANAC58            --------->At4g35610                 --------->TOE2(1)    <xxxxxxxxxxxxxxx ---->ANAC58    <---------ANAC46                           <------ZmHOX2a(1)       --------->MYB52(1) ---->ANAC58    <---------ANAC58                     <----------DOF2         ---------->DOF2   ------ -------->ANAC58<---------ANAC58  --------->MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <-------   gccagcatcctttccatggcttgtctcatgagcagccaatggaccatatcgagcgttttgaggacctcgttctgagcatcaaagctaatggagtctcaga  4470800  Previous    Next  AGI:  At2g11230.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 8.9e-61 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 4470262    to: 4474671    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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