Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <xxxxx                                                                                              -------                                                                                             <-------MYC3                                                                                             ------->MYC3                                                                                            ---------                                                                                          <---------ALFIN1                                                                                        <------ZmHOX2a(2)                                                               <---------AHL20(2)       --------->CCA1(2)                                                              <---------AHL20(2)       --------->AGP1              <---------KAN4(2)                               --------->AHL20(2)       --------->ARR11(3)     -------->HAHB4              --------->AHL20(2)           <---------AHL20(1)       <-----------ARR10     --------->YAB1             <---------AHL20(2)  <---------ATHB12                   <---------ARR11(3)  --------->YAB1        ----------->GT1    ---------->DOF2   --------->ICU4            --------->ARR14(2) ---------GT1--------->YAB1     --------->AHL20(2)--------->WOX13(1)  <-----------GT1  <---------ARR14(2)   ttactaataatacaagaataaacaaatagtaaatataaattagcaaaaagaacaatcaatgtaatttttttttaacaattttcaaaacagatccacgcgt  4458600                                                                                                   <-                                                                                                  <--                                                                                                 ----                                                                                                <----                                                                                            ---------                                                       <------MYB46(1)                 <------ZmHOX2a(1)                              <------MYB83             <------MYB83            --------->YAB1   -----                            <--------P               <--------P              <---------ARR11(3) ----- xxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <------MYB83              <xxxxxxxxxxxxxxxxsmallRNA(i) -->ANAC46               <---------TOE2(3)         <------MYB46(1)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) >ANAC46      ----------->GT1 <------MYB46(1) <---------HSFB2a(2)----------->GT1 xxxxxxxxxxxxxxxxxxx>smallRNA(i2)   agcatgggtactcatctagtatatatgaaggtaggctatgtgaaaattttggaaggtaggctatgtattgtttaaacaaaatcataagaggatggaaaga  4458700                                                                                        ------------>CBF   ----------->GT1                          --------->AHL20(2)                          <------NtERF2 --------ALFIN1                             <---------ICU4                            <---------ANAC58 -----TEIL   --------->DAG2                --------->AHL20(2)                         <---------bZIP60(1) ----->CCA1(2)            --------->AHL20(2)--------->ATHB51<-----------GT1           --------->bZIP60(1) -----ARR14(2)            <---------AHL20(2)<---------AHL20(2)               --------->ANAC58 ->DOF2     ---------->DOF2<---------AHL20(2)           <----------DOF2      --------->ANAC58 ---->ARR11(3)    ----------->GT1          <---------AHL20(1)  <---------HSFB2a(2)    <---------ANAC58 ---->ARR14(2)  --------->ALFIN1           <---------AHL20(2)  --------->HSFB2a(2)    <---------ANAC46   tacacccgttaaaaaaaagtgtgtgaaattttttttaaaaaacaaattatttctaactcttttttctcgatagataatcaagcctatggcgtcaatgttt  4458800                                                        --------->ARR14(2)                                         --------->AHL20(1)                                         <---------AHL20(1)                                     <----                                         --------->AHL20(2)      ----------->RAV1(1)            -----                                      --------->YAB1    <---------ARR11(3)                   --------                            --------->ANAC55(2)         <-----------ARR10              --------->GLK1(2)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------ALFIN1     <---------ARR11(3)                       --------->WOX13(1)<---------AHL20(2)  <-----------TCP11(1)     --------->ARR14(2)            --------->ETT(2)<---------ANAC55(2)         --------->ARR11(3)            <---------ARR14(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AHL20(2)--------->PCF2          <---------GLK1(2)    <-------GAMYB     <-------TEIL    --------->AHL20(2)<---------ARR14(2)          ----------->ARR10 xxxxxxxxxxxxxxxx>smallRNA(s)      --------->YAB1      <---------CCA1(2)      --------->ZAT18--------   ttttgctgttgatgtcgatggaagtccatcacgagattaataatattttatactaacatatcttggcccacattaagaagcccaccaagattctcaagcc  4458900                                                                                             ------>MYB83                                        <---------ANAC55(1)                                  ------>MYB46(1)                                        <---------ANAC46      <------MYB83                 <---------MYB46(2)                                        <---------O2          <---------HSFB2a(1)       <---------WRKY18(1)                                        <---------ANAC58      --------->HSFB2a(1)      --------->WRKY45                                        <---------ANAC58      --------->HSFC1(2)       --------->WRKY12                                        --------->ANAC55(2)   <---------HSFC1(2)       --------->WRKY38(1)                                        --------->O2       <------NtERF2               ----------->HVH21                                        =======================bZIP_DOF              <----------DOF2               <----------DOF2          <---------TGA1a   --------->LBD16  <---------DAG2  <---------MYB59 --------->ZAT14          ------------>CBF          ---------->DOF2<---------MYB59 --------->HSFC1(2) -----ZAT18    ===================================bZIP_DOF<---------RAP2.6(3)      <---------HSFC1(2) ---->ZAT18    <---------DAG2<------------CBF <-----------GT1 <------MYB46(1) --------->HSFB2a(2) ->ANAC58    --------->At4g35610        <---------bZIP60(2)<---------MYB52(1) <---------HSFB2a(2) ->ANAC58    <---------At4g35610     ----------->HVH21  <---------LBD16    <----------DOF2-----------   cactataggcccatcagctttttatttcttcaattgagtttgacgtgttaactatatagccggaaggtaccaaaatacttttcgaagctttgacctaact  4459000                                           --------->CCA1(2)                                          --------->ARR14(2)                                ------>ZmHOX2a(2)                               =============================HOX2a_HOX2a                               <------ZmHOX2a(2)                                                -----                              <---------ARR14(2)          <---------ZAT18                      xxxxxx                              <---------ARR11(3)          --------->ZAT18                     <------                              --------->ARR14(2)          <---------ZAT14                 xxxxxxxxxxx                   ------->GAMYB============================HOX2a_HOX2a                  --------->ZAT14               --------->MYB46(3)     --------->ANAC46    --------->ZAT14                <---------ZAT14 <---------At4g35610     <-----------HVH21<---------ARR14(2)                          ---------->DOF2 ------>AGL1 <-----------GT1  --------->ARR11(3)     <------ZmHOX2a(1)          <---------CCA1(2)   tggagatgagagatttaacaacagcgatgtccgatcttccacgagatttggaagaggaagtgctctctagggtccagttagcatctcttagagcagtgcg  4459100                   --------->DEAR3(1)                  <---------HSFB2a(1)                  <---------HSFC1(2)                  --------->HSFC1(2)                                                 ---------->DOF2                  --------->DEAR3(2)                                              <------NtERF2                  --------->HSFB2a(1)                                            --------->LBD16                  <------------AtMYB77                                         <---------LBD16                  --------->MYB46(3)                                          ------->GAMYB                --------->TCP20                                              <---------DEAR3(1)                <---------ARR14(2)                                           --------->MYB46(3)                --------->ARR14(2)                                         --------->MYB52(1)          --------->DAG2                                                 --------->At4g35610       <---------------AGL15                                          <------ZmHOX2a(2)      ----------------->AGL1                                         --------->ARR14(2)      <-----------------AGL3                                         --------->ARR11(3)    --------->AtLEC2 <---------MYB52(1)                         <---------ATHB12 <---------MYB46(3) ---->ZAT18  --------->ALFIN1                     ----------->GT1    <---------ARR11(3) xxxxxxxxxxxxxx>smallRNA(le3)           <---------DAG2<----------TaMYB80--------->ANAC58 ---ZAT18---------->DOF2                <----------DOF2--------->KAN4(2)--------->ANAC58 xxxxxxxxx>smallRNA(se3)   <-----------GT1   ---------->DOF2  --------->WOX13(1)<---------ANAC46   aactacttgcaaaaagtggaaccgtcgtttatccaaatatcgctttacaaagaagtatattcgtaaatcaagatcagcaacggcggataaagagttttta  4459200             <---------GLK1(2)       <-----------RAV1(1)                           <---------ETT(2)    --------->ICU4                      <---------YAB1      ------->GAMYB    <---------YAB1                ------->TEIL      <------ZmHOX2a(2)  --------->YAB1               <---------YAB1      <---------ARR14(2)  <---------ICU4               <---------ATHB12    <---------ARR11(3)                        -------- --------->ICU4          <---------ARR11(3)        --------->ARR14(2)                       --------- <------ZmHOX2a(2)      <---------CCA1(2)          --------->ARR11(3)--------->TOE2(3)    ---------->DOF2   gcgatcatgatgttggattctagtctatatctaatgaatgttgttattgacaagatcgacaacgaaaacaacgttgaatcatctatagagagaaaaggta  4459300                    --------->At4g35610                    <---------At4g35610             --------->ANAC46           <---------DOF5.7(2)          <---------ARR14(2)                  <---------ZAT18          --------->ARR14(2)                  --------->ZAT18       <---------ANAC46                     <---------SPL7       <---------ANAC58           --------->YAB1 --------->ATHB12 <-----------RAV1(2)      --------->DEAR3(1) ---------->ID1                    <---- --->GT1 --------->DOF5.7(2)     <---------YAB1           <----------DOF2                       <---- >DAG2 <---------ANAC58         --------->AHL20(2)   --------->YAB1          ---------->DOF2    <----   aactgattagcgtaaacgacgcagatggagtcgatataataagcgtcgtccactataatgctttgttgttatgcctcaccaaagaaaaaacaccgaaggc  4459400                                        <---------ARR14(2)                                        --------->ARR14(2)                           --------->YAB1                          <---------ATHB12                         --------->ANAC58                 <----------DOF2                         --------->ANAC58              <---------ANAC58                 <---------ANAC58    ------>ZmHOX2a(2) <---------RAP2.6(2)   <---------ANAC46     --------->WOX13(1)    <----------DOF2                                       < -----ANAC58     <---------ANAC46  <---------ARR14(2)  <---------ANAC58                             - -----ANAC58     <---------ANAC58<---------MYB46(3)    <---------ANAC46                             < -----ANAC46   <-----------HVH21--------->ALFIN1 <---------YAB1                              <-------   ttgtggtttggaacccttgtcgtgggcaatcaaggtggatcgaaactgcttatcgttgcggtttatttgaatagtccaaatgcttcttcaatttttaacc  4459500  Previous    Next  AGI:  At2g11200.1    Description:  F-box family protein. Identical to Putative F-box protein At2g11200 [Arabidopsis Thaliana] (GB:Q9ZQM4); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G17320.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 4459006    to: 4459470    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version