Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->HSFB2a(2)                                                                     ------->GAMYB                                                                    <------------AtMYB77                                                                    <------------MYB.PH3(1)        <-                                                                  --------->ARR14(2)               --                              <---------CCA1(2)                   --------->MYB52(1)              ---                            <---------ANAC58                      <---------ARR14(2)             <---                            <---------ANAC58                   --------->ANAC58                  ----                        <---------ANAC58                       --------->ANAC58                 <----             <---------At4g35610    <---------MYB46(3)         --------->ANAC46           <----------        <---------At4g35610 <---------ANAC46   <---------ANAC46<---------ANAC55(2)      <-----------GT1 -----ZAT2   --------->At4g35610  --------------------->WRI1   --------->ANAC55(2)     --------->AHL20(2) ---->At4g35610         <---------ANAC58  <---------AtLEC2   --------->MYB52(1)     --------->WOX13(1)   cttcagtttgtgctcagaagacaatttcttgcgtctcttggttagcatggctgatatatcccctaacgtaaccgtcttgtctggaccaattaactcgttc  4444700                                                          --------->HSFB2a(1)                                                          --------->HSFC1(2)                                                          <---------HSFC1(2)                                                        <---------ARR14(2)                                                        --------->ARR14(2)                                                        <---------GLK1(2)                                               --------->ANAC46                                               --------->ANAC58               <---------ZAT2                                               --------->ANAC58              --------->ANAC58 --------MYB52(1)          --------->LBD16    --------->SPL7             --------->ANAC58 ------->At5g28300       <---------LBD16    <---------SPL7<---------HSFB2a(1)--------->ANAC58 ------>LBD16      --------->YAB1         --------------->AtSPL8    --------->ANAC58 ------HSFB2a(2)  <---------YAB1          --------------->AtSPL3--------->ANAC46 --------->LBD16 ----->HSFB2a(2)<---------ICU4       <---------LBD16  --------->LBD16    --------->ANAC58          -- -----LBD16     --------->YAB1  <---------ARR14(2)  <---------LBD16 --------->ANAC46  --------->ANAC58 -------AGL1   --------->ICU4   --------->ARR14(2)<---------ALFIN1  --------->ANAC58  --------->ANAC58   cggtaactcttcttgccatcatcataaaccggagtattttcagggtcgtactccaccggaaactccccacaaggcaagccagccagggaagcaaattcaa  4444800                                                                                           --------->RAP2.6(2)                                                                                      --------->LBD16                                                         ------>ZmHOX2a(1)          <---------HSFB2a(2)                                                   ------>MYB46(1)                  --------->HSFB2a(2)               <---------ANAC58                 --------->MYB46(3)                 <-----------------AGL1               <---------ANAC58                 <------------MYB.PH3(2)        <---------DAG2 <---------ZAT6<---------ANAC46               <-----------GT1                  <----------DOF2   ---- ----------->GT1 --------->ALFIN1  <---------DAG2------->GAMYB            <---------WOX13(1)   ------ --------->GT1<---------MYB46(3)   <----------DOF2 ------>MYB83        <---------YAB1--------->ANAC46   gtagtgaaaatcacattgggtgtgtccaaaactcatactttttcttagtaaccaacttcctacatagtaaggcatgaatgactttacccgaagtcgcaac  4444900       ----------->RAV1(1)                                                              <------ZmHOX2a(1)      --------->DREB2C(2)                                                             <---------TOE2(3)      <----------ID1              <---------WRKY18(1)                           --------->LBD16      ------->GAMYB        ---------->DOF2                                     <---------HSFB2a(2)      <---------ETT(1)  --------->CCA1(2)                                      --------->HSFB2a(2)     --------->MYB46(3) <------ZmHOX2a(2)                                     <---------LBD16    -------->P         --------->ARR11(3)                                    ------>MYB83       -----   --------->MYB52(1)  --------->AGP1                                        --------->MYB52(1) <---- <---------MYB52(2)   --------->GLK1(1)                                      ------>MYB46(1)    <---- --->GAMYB            <---------GLK1(1)                                   <---------HSFB2a(1)   <---- -->P--------->DEAR3(2)<---------ARR11(3)    --------->AHL20(2)           --------->HSFB2a(1)<-------   cctactaaccgacaaatggaatagagatccaaagcatgactgaagaataaaatcgaatttctctgtctcatcaaaaaccttccggacaaaggatagaata  4445000                                                                                                  xxx                                                                                                  <xx                                                                                                  xxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              <xxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             <xxxxxxx                                                      --------->ZAT18                  <---------ANAC55(2)                                                  --------->HSFB2a(1)                  --------->ANAC55(2)          <---------ZAT14                     <---------ANAC46                      --------->GLK1(2) ---->ARR11(3)                               <------NtERF2                          <---------ARR14(2) -------ARR10                               ------>NtERF2              --------->ARR14(2)----------->HVH21 -----ARR14(2)                             <---------DEAR3(1)<------ZmHOX2a(1)      --------->ARR14(2) -----ARR11(3)                          ------>ZmHOX2a(2)<---------MYB52(1) <---------ALFIN1<-------- --GLK1(2)<---------ARR14(2)            ============================HOX2a_HOX2a xxxxxxxxxxxxxxxxxxxxx   tctagtctagagtatacattcagccttcccttcgaatattgatcgctggcgaagagtccattaggaagttttgaatccccactgagaatatgtgatgggt  4445100                                                                                        <---------YAB1                                                                                      -------->ATHB1    xxxxxxxxxxxxxxxx>smallRNA(i)                                                      <--------HAHB4    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                -------->HAHB4  <---------MYB46(3)                             ----------->GT1                   -------->HAHB4  ----------->GT1           --------->YAB1      <---------YAB1                     --------->ATHB51 xxxxxxxxxxxxxxxxxxx>smallRNA(se3)             <------------CBF               <---------YAB1 xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            --------->ATHB51             <---------MYB52(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------YAB1                <---------YAB1 xxxxxxxxxxxxxxx>smallRNA(se3)             <--------HAHB4               <---------TOE2(3)    <------- xxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------ICU4               <---------YAB1--------->YAB1 xxxxxxxxxxxxxxxxxxx>smallRNA(se3)         -------->HAHB4              <-----------GT1<---------ICU4 xxxxxxxxxxxxxxxxxx>smallRNA(le3)          -------->ATHB1             <---------ICU4  --------->ATHB51 xxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->YAB1             --------->YAB1  <---------AHL20(2) xxxxxxxxxxxxxxxsmallRNA(se3)              --------->ATHB51           -------->HAHB4 <---------YAB1 xxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------AHL20(2)        --------->ICU4<--------HAHB4 xxxxxxxxxxxxxxxx>smallRNA(si3)           <---------YAB1             <---------YAB1<---------ICU4 xxxxxxxxxxxxxxxx>smallRNA(s2)         --------->AHL20(1)          <---------ICU4  <--------ATHB1 xxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------AHL20(1)          --------->YAB1  --------->YAB1 xxxxxxxxxxxxxxxx>smallRNA(se3)        <---------AHL20(2)         <---------AHL20(2) <---------ATHB51 xxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->AHL20(2)         --------->AHL20(2) --------->ICU4<- xxxxxxxxxxxxxxxx>smallRNA(le3)    --------->AHL20(2)             --------->ICU4  <---------ATHB51 <- xxxxxxxxxxxxxxx>smallRNA(si3)     <---------AHL20(2)             <---------ATHB51--------->ICU4   -- xxxxxxxxxxxxxxx>smallRNA(le3)    --------->AHL20(2)           --------->AHL20(2) --------->AHL20(2) xxxxxxxxxxxxxxxsmallRNA(se3)     <---------AHL20(2)          <---------AHL20(2)  <---------YAB1   <- -ANAC46               --------->AHL20(2) <---------ATHB51    --------->AHL20(2)--------->YAB1    <-- >smallRNA(se3)  *TSS  <---------AHL20(2) --------->ICU4    --------->YAB1--------->TOE2(3) <--------   tgagttgttaaatgggttaacccatttaaataagaatttaattaattattattgtaaaacaaaaataaataattatcgttattaataattattatttcat  4445200                                          <---------ANAC55(2)                                          --------->ANAC55(2)                                      xx                                          <---------ANAC46                                        <--                                          <---------ANAC55(1)                                     <--                                          <---------ANAC58                                        <--                                          <---------ANAC58                                        <--                                        --------->MYB52(1)                                        <--                                     <---------ICU4                                               ---              --------->ANAC55(2)   xxxxxxxxxxxxxxxx>smallRNA(i)                                 <---         <---------DAG2             --------->ICU4                                               <xxx  <---------GLK1(2)              <------NtERF2                                                  <----  <---------ARR14(2)            ----------->GT1                                                 -----  --------->ARR14(2)            --------->LBD16                                             xxxxxxxxx --AHL20(2)   <---------ANAC46<---------LBD16                       <---------ICU4       --------->LBD16 --------ANAC55(2)            <---------At4g35610                   --------->YAB1      --------->HSFB2a(2) --------ANAC46xxxxxxxxxxxxxxxx>smallRNA(i)                  <------NtERF2              <---------HSFB2a(2) ------->ANAC55(2)    --------->ANAC55(2)<---------LBD16   <---------ANAC46            <---------ANAC46 --------TOE2(3)     <---------TOE2(3)  <-----------GT1   <---------LBD16         <---------AHL20(2)< -------LBD16<---------LBD16  --------->At4g35610  <----------DOF2  --------->ATHB12   <---------LBD16 ---GT1  <----------DOF2    <---------DEAR3(1)     <---------DAG2 --------->GLK1(2)   <---------LBD16   tacggattctacttttacgggtttacgttttcggcggaaaaattacgggtttacttttttggcggaagaatcatgggtttacatttttttcgggaaaatt  4445300                                                      <---------ANAC55(2)                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                      --------->ANAC55(2)                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                                     <---------LBD16                                                    --------->MYB52(1)                                                xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                             ----------->GT1                                             <------NtERF2                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                             <xxxxxxxxxxxxxxxxsmallRNA(si3)                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                            <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            --------->LBD16                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                           <---------ANAC46                                           >>>>>>>>>>E2Fa                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           <---------ANAC58                                           <---------ANAC58                                          <---------LBD16     --------->ANAC55(2)                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                          <<<<<<<<<E2Fc      <---------TOE2(3)                                          <<<<<<<<<E2Fdxxxxxxxxxxxxxxxx>smallRNA(i)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxx>smallRNA(i)           <---------AHL20(1) -------ANAC58          <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->ICU4 -------ANAC55(1)       <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(s)  <---------YAB1 -------ANAC58  ----------->GT1        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->AHL20(1) -------ANAC46  --------->LBD16      xxxxxxxxxxxxxxxx>smallRNA(s)          <------NtERF2 -------ANAC55(2)    <---------ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----------->GT1 ------>ANAC55(2)<------NtERF2     xxxxxxxxxxxxxxxx>smallRNA(i)           --------->LBD16 ------LBD16   <---------ANAC46  <---------TOE2(3)<xxxxxxxxxxxxxxxxsmallRNA(i) <---------ARR11(3) xxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i) -------GT1  xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ARR11(3) ---->MYB52(1)<---------LBD16    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------ANAC46    -------- xxxxxxx>smallRNA(i)--------->ICU4--------->ANAC55(2)xxxxxxxxxxxxxxxx>smallRNA(i) <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)        <---------LBD16     <--------   acgggtttatgtttttggcggaaaaattacaggtttacgtttttggcgggaaaatcacgggtttacgtttttttggcggaaaatattattttctaatgta  4445400                                       --------->YAB1                                      <---------AHL20(2)                              --------->AHL20(2)                              <---------AHL20(2)                            --------->AHL20(2)                            <---------AHL20(2)                          <---------AHL20(2)                  --------->AHL20(2)  --------->AHL20(2)                  <---------AHL20(2)  <---------YAB1              --------->AHL20(2)  --------->AHL20(2)              <---------AHL20(2)  <---------AHL20(2)             <---------AHL20(2) --------->AHL20(2)       --------->YAB1 <---------AHL20(2) --------->ICU4      --------->ICU4  --------->AHL20(2) <---------YAB1--------->AHL20(2)      <---------ARR14(2)  --------->AHL20(2)<---------YAB1   <---------YAB1     <---------ANAC46      --------->ARR14(2)--------->AHL20(2)--------->AHL20(2)<---------AHL20(1)  <---------ANAC58 <--- --->GT1     --------->AHL20(2) <---------AHL20(2)    XXXXXXXXXXXXXXXXXXXX>MIR846              ------ -TOE2(3)<---------YAB1 <---------AHL20(2)--------->YAB1<---------AHL20(2)      <---------ANAC58 ----   atttagcaaatatgatttatttatatatatatatatatatataattataaatatcgaattaatatgtttgaattcaaaattggcttaaatattctaaatt  4445500                                                                <---------AHL20(1)                                                                --------->AHL20(1)                                                   --------->AHL20(2)                                                   <---------AHL20(2)       --------->AHL20(2)                                                  --------->YAB1<---------ARR11(3)                                                  --------->AHL20(2)      --------->TOE2(3)            --------->YAB1                     --------->ATHB51 --------->ARR11(3)         ----------->GT1          <----------DOF2 <---------AHL20(2)     <---------ICU4      --------->MYB52(1)   <-----------GT1     <---------ICU4 --------->AHL20(1) --------->AHL20(2)      <---------AHL20(2)    <--------HAHB4 <---------ARR11(3) <---------AHL20(2)      --------->AHL20(2)   --------->ICU4  <---------AHL20(1)  --------->AHL20(1) ------AHL20(2)      <---------AHL20(2)       <---------YAB1  --------->ARR11(3)  --------->AHL20(2) --->AHL20(2)        --------->AHL20(2)     --------->YAB1 <---------AHL20(2)    --------->YAB1 ----->AHL20(2)     --------->AHL20(2) <---------YAB1      --------->AHL20(2)--------->AHL20(2) <<<<<   tatataaataactgtaataacatttaattaaaccatcttttatgtttcataattaaaatataaaaatatttttaaacattaaaaaataatacatttttgg  4445600  Previous    Next  AGI:  At2g11170.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 4440840    to: 4445117    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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