Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------ALFIN1                                             ----------->RAV1(1)                                            <---------ZAT18                                        --------->AtMYB61      --------->ZAT14                   ------->GAMYB      <---------ZAT14                  <---------MYB55(2)     ------->GAMYB        ------>MYB83 --------->MYB46(3)   <---------At4g35610    ------>MYB46(1) ------>MYB46(1)   --------->At4g35610    -------->P  ------>MYB46(1) ------At4g35610        --------->TOE1(2) ------>MYB83 ----->At4g35610 <-----------HVH21    -------->P --------->ANAC46  <----------DOF2 -GAMYB    <-----------HVH21          ------>MYB83       <---------GLK1(1) ----RAV1(1)     --------->TOE2(3)  --------->MYB46(3)   --------->GLK1(1) --MYB46(3)<-----------TGA1         --------->AtMYB61  <------ZmHOX2a(1)                      -------   gctgcaactgcagcgtcatcgtcaaacctacaagaagaccaaccagcccacacataaggatttctatgtctttaaacttctaagacatcacaatgctaag  4413100             <---------------AGL15             --------------->AGL15      <---------ZAT2     ------>MYB83                            ------>MYB46(1)     ------>MYB46(1)                         ------>MYB83   ------->GAMYB                           --------->TOE2(3)                                ---------  --------->MYB46(3)                       <---------MYB59             ---------->DOF2      --------- --------->ANAC58                <---------ZAT18                <---------ZAT18      <xxxxxxxxxxxxxxx --------->ANAC46                --------->ZAT18                --------->ZAT18   --------->ZAT18 --------->ANAC58              --------->ANAC46               --------->ANAC46    <---------ZAT18 -------->AtSPL8 <---------MYB46(3)     <<<<<<<ZML2       <----------DOF2       --------->ANAC46<----   tacaaccaagctgttctatttgttgaaacttctaaggcactagaacctaattccattacgctctaaggcactacaaagttctaaggcactacaacctaag  4413200      <------ZmHOX2a(1)                        <----------DOF2   >>>>>>>ZML2       <---------DAG2         --------->ANAC58              --------->ANAC58   <---------HSFC1(1)--------->TOE2(3)      --------->ANAC58              --------->ANAC58   --------->HSFC1(1)--------->TOE1(3)   ----------->HVH21             <---------ZAT2   --------->HSFB2a(2)                   <---------SPL7                <------NtERF2         <-------   <---------HSFB2a(2)                 --------->LBD16                 --------->ZAT2        -------- >AtMYB61     ------->TEIL            <---------LBD16             --------->ANAC58           <------- >TOE2(3)  <---------ATHB12          <---------LBD16              --------->ANAC58           -------- xxxxxxxxsmallRNA(le3)  -------->P  <---------LBD16           <-----------HVH21  <------ZmHOX2a(1) -----At4g35610   <-----------GT1   <---------HSFB2a(2)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ---   ctgttctaggacaatgaatttaaccttaccagagagttctcgggggacgctttgggtctagccttgtcaagccagcacgaccaggactatcaagaagctc  4413300                                                                   <-------GAMYB                                                                  <---------ANAC46                                                                  <---------ANAC58                                                                  <---------ANAC58                                                                 <------NtERF2                                                                <------MYB46(1)                                                                <------MYB83                                                            --------->MYB55(2)                                                            --------->ATHB12            <---------ANAC58                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 xxxxxxxxxxxxxxxx>smallRNA(i)           <---------ANAC58   <---------ZAT6                          <---------WOX13(1)  <---------DEAR3(1) <---------MYB46(3)   --------->ALFIN1                --------->YAB1xxxxxxxxxxxxxxxx>smallRNA(s)     --------->MYB55(2) --HSFB2a(1)             <---------ZAT2  <---------MYB46(3)<---------AtMYB61   <---------MYB46(3)   - ->HSFB2a(1)             --------->ZAT2  --------->ATHB12<---------ANAC46     <---------AtMYB61------ --HSFC1(2)              --------->At4g35610----------->HVH21 <--------P  <------NtERF2 <---------ANAC46 ->HSFC1(2)<---------MYB46(3)    --------->GLK1(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    ------->TEIL --->ZmHOX2a(1)          <---------At4g35610--------->ETT(2)<---------MYB46(3)--------->ALFIN1 ------   ctccagtgtgagattgttgagacgctcagcttgagaatcagaatggttgacagaaggctgagtggttggcgttggaggcgatggtggatggcatgaacct  4413400                                                                                             ------>NtERF2                                                                                            ---------                                                                     <---------ANAC46      --------->RAP2.6(3)                                                                  <---------CCA1(2)       ------>NtERF2                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<------NtERF2                  --------->ZAT2          --------->MYB52(1)  <---------ANAC46            <---------ATERF1(1)           --------->KAN4(2)<------ZmHOX2a(1)          <---------ZAT2<---------ANAC58    --------->DEAR3(1)     --------->LBD16     <-----------RAV1(2)           --------->ZAT14                   ----------->HVH21   <---------LBD16--------->ZAT14        ----------->HVH21 ----------->HVH21           ------>NtERF2   ----------->RAV1(2)----------->HVH21--------->ANAC58--------->ZAT2<---------ANAC58 --------->DEAR3(1) ------>TEIL      <---------ZAT14      --------->AtLEC2<---------At4g35610            ----------->HVH21 --->TOE2(3)      <---------ZAT2       --------->ANAC46<---------ZAT14  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->TOE1(3)    --------->ANAC46       --------->ANAC58--------->At4g35610      --------->ARR14(2)  -   tgaacccctgaaatattcccagcactgacaggagaattgacatgcaacgggtctcgctgctgtgacctatatcgtgcataagtattctccgacgacggca  4413500                                 <---------MYB52(1)                                --------->LBD16                               <---------ANAC46             ------------>CBF                               --------->ANAC55(2)    --------->HSFB2a(2)                               <---------ANAC55(2)    <---------HSFB2a(2)                              ------>ZmHOX2a(2)     --------->CCA1(2)                              <-------TEIL         --------->ARR14(2)                 --------->DAG2                             <------ZmHOX2a(2)     --------->ARR11(3)                ---------->DOF2                            <---------ARR14(2)     <---------ARR11(3)       --------->At4g35610                            --------->AGP1         <---------ARR14(2)   ------>ZmHOX2a(2)                            --------->ARR14(2)     <---------AGP1      <------ZmHOX2a(2) *TSS                     ----------->ARR10        --------->AGP1 ----------------->AGL1 >ANAC46                 <xxxxxxxxxxxxxxxxsmallRNA(i)------>ZmHOX2a(2)--------->ARR14(2)       ------ -------->AtLEC2   --------->LBD16       <<<<<<<ZML2<------ZmHOX2a(2) <---------ARR14(2)   --------->MYB59   tcttgcaaaacaaacaaaaccctgagtttagatccgtaaactagaacatattagatctggaaaacaatgccagatcggagatgaagaaaaagttagatcg  4413600                                                                                           <---------At4g35610                                                                                           --------->At4g35610                                                                                           <---------ZAT2                                                                                           --------->ZAT2                                                                                          <---------MYB46(3)                                                                                        --------->ATERF1(1)                                                                                        <xxxxxxxxxxxx                                                                                        --------->At4g35610                                                              <---------At4g35610       <---------At4g35610                                                           --------->At4g35610         ------>NtERF2          --------->MYB59                                  --------->ZAT2              <---------ATERF1(1)        <---------MYB52(1)--------->ANAC46                 <---------At4g35610         <---------RAP2.3(1)        <<<<<<<<<MYB1     --------->ANAC58             <---------DEAR3(1)             <---------DEAR3(1)        <<<<<<<<<MYB2     --------->ANAC58---------->DOF2  <---------ZAT2            --------->RAP2.6(3) >ZmHOX2a(2)  ------>ZmHOX2a(2) --------->TOE2(3)<------ZmHOX2a(2)                 ----------->HVH21   gagagaagcagttagatcggagaagaagacgctaccttggaggtaaaagagatcgagtcgctgctgctactggagaagaagagtcgcgacggctgctgga  4413700                 --------->ZAT2             <---------ANAC58                 <---------ZAT2             <---------ANAC46                 <---------At4g35610        <---------ANAC58                 --------->At4g35610       --------->At4g35610              <---------At4g35610         --------->MYB55(2)              --------->ATERF1(1)        <--------P              <xxxxxxxxxxxxxxxxsmallRNA(i)<---------MYB46(3)            >>>>>>>>>TBF1              --------->At4g35610       <-------GAMYB            ------->GAMYB             <---------RAP2.3(1)       <---------MYB46(3)     --------->MYB52(1)             <---------ATERF1(1)     --------->RAP2.6(3)   --------->ANAC58             ------>NtERF2          ------------>AtMYB77   <---------ANAC55(2)                -------            <---------DEAR3(1)      --------->MYB52(1)     --------->ANAC46               --------->SPL7           --------->ATERF1(1)     ----------->HVH21       --------->ANAC55(2)           --------->MYB52(1)         ----------->HVH21       --------->YAB1            --------->ANAC55(1)     --------->MYB59 xxxxsmallRNA(i)<---------MYB46(3) ----------->TGA1        --------->ANAC58>>>>>>>>>TBF1<---------SPL7   gaagaagagttgcgacggctgctggagaagaagagtcatgacggttgctggagaagacgagacgcaacggagaagaagaagaagttagatcgaacggtgg  4413800                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   xx                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                              <------                                                                      --------->ZAT2          <------                                                                      <---------At4g35610     <------                                                                      <------NtERF2           <------                                                            <------ZmHOX2a(2)                 <------                                                           <---------ARR14(2)                 <------                                               <---------HSFB2a(2)    --------->At4g35610     <------                                               --------->HSFB2a(2) <---------LBD16           <-------         ---------->DOF2               <---------MYB52(1)  --------->ARR14(2)               --------- -->ALFIN1       ----------->GT1       --------->DOF5.7(2) --------->AGP1       <---------HSFB2a(2)==   aagttggaatggaaagaagaagttatatcggagaagaagacgttaccttggagaagaaacagatcgactcgcggctgaagttggagaagaagagttgcgg  4413900  --------->At4g35610  --------->ZAT2  <---------ZAT2  <---------At4g35610 <---------MYB46(3) ---------DEAR3(1) --------At4g35610 ------GAMYB ------->ATERF1(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----NtERF2 ------->At4g35610 --------ZAT2 -------DEAR3(2) -------ERF1 -------RRTF1(1) -------RAP2.3(1) --->NtERF2                                     --------->ANAC55(2) -------MYB46(3)                                --------->bZIP60(2) -------ATERF1(1)                               --------->bZIP60(1) -------RAP2.6(1)                               <---------bZIP60(1) ------RAP2.3(3)                                --------->ANAC58 ------ANAC46                                   <---------ANAC55(2) ------DEAR3(1)                                 <---------ANAC46 ------ATERF1(2)                                --------->ANAC58 ----->ATERF1(2)                               <------NtERF2 ------RAP2.3(2)                              ------>NtERF2                      --------->DEAR3(1) ------RAP2.6(2)                             ----------->HVH21                  --------->ANAC58 --NtERF2                                    --------->DEAR3(1)                 --------->ANAC58 -----At4g35610                             <------NtERF2                       <------NtERF2 ---->ATERF1(1)          <------NtERF2      --------->ATERF1(1)                ------>NtERF2 ->NtERF2               --------->LBD16     --------->RAP2.3(1)               <---------ALFIN1 ----RRTF1(1)          <---------ANAC46    <---------ERF1                     --------->DEAR3(1) ----ATERF1(1)         <---------DEAR3(1)  <---------DEAR4(2)                <---------ABI4(2) ----ERF1             --------->ATERF1(1)  <---------RAP2.3(1)               <------NtERF2 ----RAP2.3(1)        <---------LBD16      <---------ATERF1(1)              <---------ORA47(2) ---RRTF1(3)          <------NtERF2        <---------ORA47(2)               <---------ATERF1(1) ---ANAC46            ------>NtERF2        ------>NtERF2                    <---------RAP2.3(1) ---RAP2.3(2)        <---------ATERF1(1)  <---------DEAR3(1)                ------>NtERF2 ---ANAC58          <---------DEAR3(1)    <---------RAP2.3(3)               --------->RAP2.6(2) ---ANAC58         <---------LBD16        --------->ATERF1(2)               <---------DEAR4(2) ---DEAR3(1)      =======================bZIP_DOF --------->TGA2(2)        <---------RAP2.6(2) ---RAP2.3(3)     --------->O2            <---------ANAC46                 <---------RAP2.3(2) ---RAP2.6(2)     <---------O2---------->DOF2<---------DEAR3(1)            --------->ATERF1(2) ---RRTF1(2)      <---------TGA1a         <---------RAP2.6(2)              <---------RAP2.3(3) --LBD16          <---------bZIP60(2)     <---------RAP2.3(2)              <---------DEAR3(1)  ------ >ALFIN1        --------->CCA1(2)        --------->ATERF1(1)               <---------ATERF1(2) ====== ===========================MYC_MYB      <---------ABI4(1)      >>>>>>>>>TBF1--------->ATERF1(1)    x   cggctgctggagaataagagacgcggcggagaaaaagaagagaggcggcgacgtaatcaaatcgaagaagaagagaggcggcaccgaagaaaatagatcg  4414000  Previous    Next  AGI:  At2g11110.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 6.4e-110 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 4411458    to: 4413501    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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