Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------RAP2.3(1)                                  ------>NtERF2                                 --------->bZIP60(1)                                 <---------bZIP60(1)                                --------->RAP2.3(1)                               <---------ATERF1(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <---------DEAR3(1)                --------->ZAT2   --------->ZAT14 --------->At4g35610          --------->ALFIN1        --------->HSFB2a(2)        --------->ZAT18 -------->RAV1(2)         --------->ANAC58            <---------HSFB2a(2)        <---------ZAT14 -->NtERF2                --------->ANAC58 <XXXXXXXXXXXXXXXXXXXMIR775  ----------->RAV1(1) ---->ANAC58          <------ZmHOX2a(1)   --------->ZAT6        --------->At4g35610 ---->ANAC58         <----------ID1<------NtERF2 <---------TOE1(2)    --------->REM1(1)-------->P ----LBD16        ---------->DOF2--------->PCF2 ------>ZmHOX2a(1)--------->AGP1  <---------ZAT18   --   gcctgctaaaaacccaagtccaaaggacaaggatggcgccactagcactcctaggtctcgaagaccagctctacaacatattgtgcagttaccagttcaa  4404500                                   --------->ANAC58      <---------HSFB2a(1)          --------->ANAC58      <------MYB83                 --------->ANAC46             --------->HSFC1(1)<---------YAB1      <------MYB46(1)             ------->TEIL                  --------->HSFB2a(2)      --------->HSFB2a(1)         <---------LBD16               <---------HSFB2a(2) <---------GLK1(2)      ----------->GT1     <---------HSFB2a(2)                ------>ZmHOX2a(1)<----------DOF2 ------->TOE1(2)          --------->HSFB2a(2)             ------>ZmHOX2a(1)   <---------DAG2  <------   acttgggaaggttacaagaagtagtcttctagtatgcacgggagcctagtcatccatctcctccttctagaccctctccgctttctgattctcatcacac  4404600                                                                                                   <-                                                                                                  ---                                                                                          --------->LBD16                                                                                         <---------HSFB2a(2)                                                                                      <---------ARR14(2)                                                                              <---------ICU4  <------ZmHOX2a(1)                                                                    <---------GLK1(2) --------->ARR14(2)                                                               --------->At4g35610 <---------TOE2(3)           ---------->DOF2          <---------ZAT18          <-----------RAV1(2)  <---------At5g28300       <---------LBD16 <---------ANAC46                 <---------PCF2       <---------YAB1--------->LBD16 ---ALFIN1<------ZmHOX2a(1)         --------->ZAT18     <---------PCF5     --------->YAB1--------->HSFB2a(2)   cctcgctgttcaggaaagtagagttgtggataatagagtgcatacttccctcagaatgggacctcagttggattctatcacaattacggttcccgaggaa  4404700                                                           ---------->DOF2                                                       --------->AtMYB61                                                     ------>NtERF2                                                     ----------->RAV1(1)                                                    --------->RAP2.6(2)                      ---------->DOF2            --------->ANAC58                  --------->LBD16                --------->ANAC58           <---------ARR11(3)                    --------->ANAC46                                 ---           --------->ARR11(3)                  ---------->DOF2--------->ATHB12   ----------->RAV1(2) ----------HVH21<-----------RAV1(2)           --------->AtMYB61       --------->AtMYB61 --------->AtMYB61 -------->GT1 <----------DOF2         <---------ATHB12 ----------->RAV1(1)   ---------->DOF2      ---   atgtcaaatacaagagcttcagggaaaagaaatactccaaatcaaaaaccaaagccaccacaaaagattggaccaaaacaaaagcctggaccaaaaccaa  4404800                                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                               --------->MYB46(3)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               <---------MYB55(2)                 <xxxxxxxxxxxxxxxxxx                                              -------->P                    --------->DAG2                                              --------->ANAC58             ---------->DOF2                                              --------->ANAC58          <------ZmHOX2a(1)      <-----                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ALFIN1                                    --------->At4g35610               --------->LBD16------->MYC3 <--                         --------->ANAC58 --------->ANAC58           --------->HSFB2a(2)   --------->AHL20(2) ------>YAB1             --------->ANAC58 --------->ANAC58           <---------HSFB2a(2)--------->YAB1 -------->GT1          <--------P---------->DOF2--------->AtMYB61  ------>ZmHOX2a(1) <-------MYC3----   gagtaattcgtagtccctccaaggggtaagcctaagaaagcagaaggcaaccactacttgggcctcttcctccaggaaaaagctccacgttgataatata  4404900                         --------->ALFIN1                       --------->ALFIN1                       <-----------RAV1(1)                      *TSS                     ----------->RAV1(2)                     --------->At4g35610                     <------NtERF2                     <---------At4g35610    <---------ARR14(2)                     <---------ZAT2         --------->ZAT14              <---------ANAC58              <---------ZAT14              <---------ANAC58              --------->ARR14(2)              <---------bZIP60(2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <-            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                   <-         <------ZmHOX2a(1)                --------->REM1(2)                                        --       xxxxxxxxxxxxxxxx>smallRNA(s)      <---------ANAC46                                          <-   <----------DOF2   --------->ZAT2 <---------ALFIN1                                               <- xxxxxsmallRNA(se3)<-----------RAV1(2)  --------->LBD16                                            -- ------GT1 <---------DEAR3(1)      <---------ZAT14                                  <---------ARR14(2) -------MYB59 <---------ANAC46     --------->ZAT14     --------->YAB1         <---------DEAR3(1)  --- ------->RAV1(2)   ================RAV --------->DEAR3(1)           <-----------GT1 --------->ARR14(2)   cctgactttcaggatggcgaggcagctgtggcccttctgcaccgcgtatactgcctataatccctgctattaacagagcctcggtggattttcaaattcc  4405000                                                    --------->ANAC58                                                   --------->ZAT18            ------>ZmHOX2a(1)                     <---------ALFIN1           --------->TOE1(3)                     --------->At4g35610           --------->TOE2(3)                     <---------At4g35610 ------>MYB83                                    --------->HSFC1(2) ------>MYB46(1)                                 <---------HSFC1(2) --------MYB111(2)                              --------->ANAC58  <---------TOE2(2)             <---- --------MYB46(2)                               --------->ANAC58  <---------TOE1(2)             <---- ------->AtMYB61                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <---- --------MYB111(1)       <---------ANAC58   <------MYB46(1)      ------>ZmHOX2a(1)  --------->ANAC46 --------MYB55(2)        <---------ANAC58   <------MYB83--------->MYB52(1)   <---------GLK1(1)  <---- ------->MYB46(3)        <---------ANAC46 <--------P--------->ANAC58   ---------->DOF2          ----- ------>ANAC46      <---------REM1(1)     --------->ALFIN1--------->ZAT6 <---------TOE2(3)   <-------   accaaacactcttccttagctattgtagcttggaacttccaagggttgggaagcaccctaacagttcctagattaaaggaaattcgacgcagtctgtttc  4405100                                                    <----------DOF2                                                 --------->ARR11(3)     <----------DOF2                             <---------ARR11(3)  --------->ARR11(3)                           <---------AHL20(2)  <---------ARR11(3)                          --------->AHL20(2) --------->GLK1(1)                           <---------YAB1 <---------GLK1(1)                         --------->ATHB51 -----ANAC58                               <--------HAHB4 -----ANAC58                               <---------ICU4 -----ANAC55(2)                           <---------YAB1                                           <- -----ANAC46                              --------->ICU4                          <-----------GT1 <-- ---->ANAC55(2)                      <---------bZIP60(1)               <-----------GT1          ----- --MYB52(1)                          --------->bZIP60(1)              <---------YAB1          ------>ZmHOX2a(1)   gtgatatcttttttctcatggagaccaaaaatcaagatgacttcattattaaatcttttgaggggatgggttatcacagcatgtttactatacctcctct  4405200                                                                           --------------->AtSPL8                                                                         <----------DOF2                                                                   --------->REM1(1)                            ---------->DOF2                    ----------->GT1  <---------HSFC1(2)                         --------->HSFB2a(2)                   <---------ANAC46 <---------HSFB2a(1)                         --------->HSFC1(1)                   <---------------AtSPL8             ----                         <---------HSFC1(1)                   --------------->AtSPL8     <---------At4g35610     <---------LBD16     <---------HSFB2a(2)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->At4g35610 --------ZAT6           <---------LBD16       --------->bZIP60(2) <-------TEIL  --------->HSFC1(2) -------TOE1(3) --------->At4g35610           --------->ANAC46--------->MYB59   --------->HSFB2a(1) ---->STY1(1)   <---------At4g35610         <---------ALFIN1  --------------->AtSPL3   <-----------RAV1(2)   agggttaagcgggggtttagctctcttctggaaagatggagactgcccacatcatggtttcagtgaggtacaactctttggtaccttcttcagatgagtc  4405300                                                           --------->At4g35610                                                           <---------At4g35610                                                           ----------->RAV1(2)                                                           <---------ZAT2                           -                            <---------ANAC46               --------->ZAT2                          --                   --------->HSFB2a(2)                   <-----------RAV1(2)                    <----           --------->At4g35610      --------->YAB1  <---------MYB52(1)              --------->GLK1(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->DOF5.7(2)<---------At4g35610      -----      --------->CCA1(2) <-------TEIL----------->GT1<-----------HVH21   --------->At4g35610<---------ANAC58 ----->ATHB12      <---------HSFB2a(2)         <---------ALFIN1      --------->REM1(1)    <---------ANAC58   gattggagataccagatggctctagatgcagcgagtaatggtaacttcaacaccgttacccagctgatgctacagctctaatagagaacctcgcttgcag  4405400  Previous    Next  AGI:  At2g11080.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 6.0e-05 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 4404922    to: 4405524    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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