Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <---------ARR11(3)                                                                              --------->ARR11(3)                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                                                              ------->TEIL                                                                             <---------CCA1(2)                                                                           <----------DOF2                            <-------TEIL                                 --------->At4g35610                       <-----------RAV1(2)                            --------->At4g35610                --------->ZAT2                      --------->At4g35610  <---------At4g35610                --------->At4g35610                 --------->ZAT2    ----------->RAV1(2)             ------>ZmHOX2a(1)              <---------MYB52(1)        --------->ZAT2            --------->TOE2(3)   <---------ICU4  <---------ANAC58      <---------At4g35610       -----            --------->TOE1(3)  --------->ICU4   <---------ANAC58      <---------ZAT2        <--------        xxxxxxxxxxxxxxxx>smallRNA(i)   --------->ANAC46             <-----------RAV1(2)     <--------   ttgagactcagtttccttagcaggctcaggttcattatcacactcagtttgcttagcaggctcagttttctcagctgctgtatcttggggctcaatggtg  4396200                                                                                <---------At4g35610                                                                                --------->At4g35610                                                              <----------DOF2   ----------->RAV1(2)                                                  <----------DOF2          --------->At4g35610                                 <----------DOF2 <---------DAG2    --------------->AGL15                          <----------DOF2       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------ALFIN1<---------DAG2 <---------ZAT18 ->NtERF2             --------->REM1(1)      <---------ZAT18 <---------ANAC58<---------ZAT14       -- -ATHB12xxxxxxxxxxxxxxxx>smallRNA(s)         <---------ETT(2)<---------ANAC58--------->ZAT14       <- ---RAV1(1)       --------->At4g35610<----------DOF2     <----------DOF2   <---------At4g35610-------   cctatatactctggctcatcatctacaactttcttctttcttttctgtccacctttcttctttgctttacccatttcagttcacctgcatttcacaaaaa  4396300                                              --------->ANAC58                                              --------->ANAC46                                              --------->ANAC58            --------->YAB1                 <---------ATHB12            --------->ANAC58           <---------ATHB12               ------>MYB83                 --------->ANAC46      <-----------HVH21                   ------>MYB46(1)              --------->ANAC58 ------->GLK1(1)    <---------HSFB2a(2) --------->MYB46(3)         --------->AtLEC2 --------GLK1(1)    --------->HSFB2a(2) <---------MYB46(2)         --------->ANAC58         --------- --->DOF2--------->WOX13(1)            --------->ANAC46            --------->ANAC58      --------->YAB1   gaattccatgtcaatcatacttctaaaaacgaaaacgactcaccaaacaagcaagagtaaacatagagcatgcaaggcataaaacaatgactcataaaat  4396400                                                 <---------ARR14(2)                                                 --------->ARR14(2)                                              --------->YAB1                                          ------>ZmHOX2a(2)                                         <------ZmHOX2a(2)                                        --------->AGP1                                    <------MYB46(1)        --------------->AGL15           --------->ARR11(3)                            <-----------RAV1(1)       <-----------------AGL3           <---------ARR14(2)                         <---------ARR14(2)       <-----------------AGL2           <---------ARR11(3)                         --------->ARR14(2)     --------->GLK1(2)                  --------->ARR14(2)           <---------At4g35610  <------MYB83    <---------GLK1(2)                   <---------AGP1<---------At4g35610          --------->ARR11(3) --------->YAB1                        <---------CCA1(2) <-------TEIL--------->At4g35610<---------MYB52(1) >AHL20(2)                           --------->YAB1   --------->At4g35610          <---------ARR11(3)   gaataagaatctacatttggcacataaatgccttcacaatcagatctagcatattcagcttcatccatttcagcgtccatgtcaatatctgttggtaatg  4396500                    ------>ZmHOX2a(1)            <---------ARR14(2)         <---------ARR11(3)            --------->ARR14(2)         --------->ARR14(2)                ------>MYB46(1)         <---------ANAC58        <-----------GT1                         -------->P         <---------ANAC58      <----------DOF2      ------->TEIL         ------>MYB83    -------->P  ------>MYB46(1)   --------->LBD16    --------->ARR11(3)       ----------->RAV1(1)   --------->At4g35610  ------>MYB83    ----------->RAV1(2) <---------CCA1(2)   --------->ATHB12        ------->TEIL   gaccaatctctgcgtttccttcctgagcatcttctttactatatcttcttgatgaacctttcattgcaacataccaactagatgaatcatctacccttga  4396600                                                     <---------TGA1a                                             ==================bZIP_DOF                                          *TSS--------->DAG2                       ------->TEIL                                          ----------->TBP                       --------->DOF5.7(2)                                        <---------------AGL15                 --------->O2                                        <----------DOF2                      ------>MYB46(1)                                        =======================bZIP_DOF      ------>MYB83                                        ------>ZmHOX2a(1)                 --------->MYB46(3)                                     <------ZmHOX2a(2)                  >>>>>>>>>>WRKY26                                    <---------ARR14(2)                  >>>>>>>>>>WRKY6                                    --------->ARR14(2)                  >>>>>>>>>>WRKY43                             <---------AHL20(2)      <---------ANAC58   >>>>>>>>>>WRKY38                             --------->AHL20(2)      <---------ANAC58   <---------WRKY18(1)                             <---------YAB1  ---------->DOF2            >>>>>>>>>>WRKY11                   <---------At4g35610------>ZmHOX2a(2)      <---------YAB1 --------->MYB52(1)              ----------->RAV1(2)   ------->TEIL--------->At4g35610    --------->WRKY12         -----         <---------ANAC58 <-----------------AGL3<---------At4g35610    --------->WRKY45         -----         <---------ANAC58 ==============================MADS_MADS      --------->WRKY38(1) ------>ZmHOX2a(1)   atagaagacttgcttcgcctgagatgctaatataaatggatcctttaaaaagctgacttgactctgattcaagttgaccaacgtgaacccatcctctacc  4396700                             --------->ANAC58                             --------->ANAC58                            --------->bZIP60(1)                      <------------CBF                                   <---------bZIP60(1)   ------          --------->ZAT6----------->HVH21                             <---------YAB1<-----------HVH21  ------->GAMYB  ------->GAMYB                                 --------->ANAC58  <---------At5g28300 ---->TOE2(3)   --------->MYB46(3)                      --------->ZAT14  <---------GLK1(1)     ------ ---->TOE1(3)----------->HVH21          <------ZmHOX2a(1)      --------->ANAC58<---------MYB52(1)   ttaaccccattacctctaacagcccattgacaccgaaatataggaacatagaacacattgtagtccagcaatatgatatcagttactgtcccatagtacg  4396800                                                                  --------->ANAC46                                                 <-----------RAV1(1)                                                 <---------MYB46(3) --------->ZAT18                                    <---------AGP1 <---------MYB52(1)         --------->MYB46(3)         <-----------ARR10           <-----------GT1     >>>>>>>>>>WRKY63               <---------ARR11(3)      --------->YAB1                      <----   --------->ANAC58      <----------DOF2   --------->ANAC46<---------YAB1              <----------DOF2   --------->ANAC58   ------->TEIL  <---------ARR14(2)<---------ANAC58             <-----------GT1  - --->ANAC58          <---------CCA1(2)------>ZmHOX2a(2)  --------->YAB1  --------->ZAT14      ------- --->ANAC58     <-----------RAV1(1) --------->ARR14(2)<---------ANAC58   <---------ZAT14    ---------   ataccaagtcaacaacttgtgttgtatctttagcactggatctacacatagctgttgcttcataataaactccactattctgaatttgcctttcaagtga  4396900                                                                                    --------->ARR14(2)                                                                      --------->ANAC46                                                                      --------->ANAC58        -------                                                                      --------->ANAC58        -------                                                          --------->WRKY38(1)       ------->TEIL             --------->WRKY38(1)                          --------->WRKY12          <---------ARR14(2) -----At5g28300      --------->YAB1      --------->ARR11(3)      <-------MYC3      <---------CCA1(2) -------->ALFIN1   --------->AtLEC2     <------ZmHOX2a(1) --------->WRKY45   --------->AHL20(2)------ ---->HVH21  --------->WRKY12<-----------GT1   --------->ZAT6    ------->MYC3<---------AHL20(2)<----- >ANAC55(2) <---------MYB52(1) ----------------->AGL1  <---------ANAC46     --------->AHL20(2)-------   ccgtgtgtgaaaccgttgtccattcacaatataaccagaataggaccttgcactacatcgtggaccatatgcaagccatttaattgtatcttcatgtcca  4397000                                                                                        <---------ANAC58                                                                                        <---------ANAC58                                                                          ------>ZmHOX2a(2)                                                                         <------ZmHOX2a(2)         ----------->GT1                                                <---------ARR14(2)    ---------->DOF2                                             <---------AHL20(2)      <---------ANAC46 ---------->AGL2       --------->YAB1                          --------->AHL20(2)   <---------ANAC58 ---------->AGL3      <---------ATHB12                      --------->TOE1(3)       <---------ANAC58 --------->AGL15    ------>MYB83                     --------->YAB1     --------->ARR11(3) ----------AGL15    ------>MYB46(1)   --------->WOX13(1)    --------->TOE2(3)  --------------->AtSPL3 ---------->AGL1-------->P      ---------->DOF2     <---------YAB1      --------->ARR14(2)     <-----   tttgaagaaagaggtatctaccaaatgataaacagaaagtcagtcacttatgttctcataaaccataaaattcagatcgtggaagtacttgcctgttctt  4397100  Previous    Next  AGI:  At2g11060.1    Description:  transposable element gene. CACTA-like transposase family (Tnp1/En/Spm), has a 7.0e-150 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element) Range:  from: 4393453    to: 4396642    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g11070.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element) Range:  from: 4396661    to: 4400155    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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