Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------ARR11(1)                              <---------TOE1(3)                    --------->GLK1(2)                      --------->O2           <---------ANAC55(1)                             <---------bZIP60(1)           --------->ANAC55(2)                             <---------O2           <---------ANAC58                                <---------ANAC46           <---------ANAC55(2)                             >>>>>>>>>>HY5           <---------ANAC58                                --------->bZIP60(1)           <---------ANAC46                                --------->TGA2(1)          <---------LBD16                                  <---------bZIP60(2)         --------->MYB52(1)                                <---------TGA2(1)                ------->TEIL         --------->CCA1(2)                                <XXXXXXXXXXXXXXXXXXXXMIR4228    ------->GAMYB         <-----------GT1      ----------->GT1             ----------->STF1               --------->MYB46(3)    ---------->DOF2 ------->TEIL                         <---------TGA2(2)<---------At4g35610 ------ZAT14        --------->ARR14(2)                  ----------->TGA1  --------->At4g35610  <----- ------ZAT18        <---------ARR14(2)      --------->AHL20(2)<---------ANAC46         <---------DOF5.7(2) ----->ZAT14       <---------ARR14(1)  <----------DOF2<---------ICU4<---------TOE2(3)  --------->MYB52(1) ----->ZAT18       <---------CCA1(2)<-----------GT1 <---------AHL20(2)  <--------P   --------->DOF5.7(2)   gcactcgaaagttacgggttcgaatcttgagtaagttatttctttttaaaatataaaaatgacgtcgtttaagggtagctaatagatgttaacggacgtt  4346100                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                --------->ARR14(2)                                                                                --------->ARR11(3)                                                                                <---------ARR11(3)                                                                               <---------GLK1(1)                                                                           <---------TOE2(3)                                                                           <---------TOE1(3)                                                                       <-------GAMYB    <xxxxxxxxxxxx                                                                      <------MYB83     <xxxxxxxxxxxxx                                             <---------TOE2(3)        <------MYB46(1)  <xxxxxxxxxxxxx                                            <---------DOF5.7(2)       <---------MYB46(3)<xxxxxxxxxxxx                                     <---------ANAC58                <---------AtMYB61 <xxxxxxxxxxxxx                                     <---------ANAC58   <---------TOE2(3) <---------DOF5.7(2)                          ----------->GT1   --------->MYB52(1)       <---------MYB46(3)<xxxxxxxxxxxxx                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <--------P --------->GLK1(1)    -           --------->MYB46(3)        <---------ANAC46   <---------TOE1(3) --------->MYB52(1)   <xxxxx         <---------DOF5.7(2) <---------AHL20(2)  ------->TEIL       <---------MYB52(1) <xxxxxxxxxxxxx  --------->GLK1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)----------->GT1--------->DOF5.7(2) <xxxxxxxx ----MYB52(1)   --------->YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------MYB55(1) <xxxxxxxxxxxxx   agataatctgttaacgactgataacagatagtttatttggcctggttaacgaatgtttatggtttaaacggttggttaacgatatcttcatgtttaaaat  4346200               ----------->GT1        <---------AHL20(2)       --------->AHL20(2) xxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx>smallRNA(si3) xxxxxxxxxxsmallRNA(le3) xxxxxxxxxxsmallRNA(le3) xxxxxxxxxxsmallRNA(si3)             ---------->DOF2 xxxxxxxxxxxsmallRNA(le3)      --------->ATHB51 xxxxxxxxxxsmallRNA(se3)      --------->ICU4                                                  <------ xxxxxxxsmallRNA(fl3)<---------AHL20(2)                                                <---------MYB52(1) ---------->RAV1(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             ----------->GT1  --------->LBD16 xxxxxxxxxxxsmallRNA(le3)   <---------------AGL15                 ------>ZmHOX2a(1)   --------->At5g28300 xxxxxxxxxsmallRNA(le3)    ----------------->AGL1             <-----------GT1        ----------->GT1 xxxxxxxxxxxxxxxsmallRNA(l2)--------------->AGL15     --------->ANAC46            <---------ALFIN1 <- xxxxxxxxxxsmallRNA(l2)    ----------------->AGL2   <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ggccacatataaaattgtggtataaaatggccataatttgaaagttggagtattaaacgacatttttcctgttgtaatttgtcaacaccgtgaattttac  4346300                                                                                                <----                                                                 --------->YAB1                 <----                                                                 <---------AHL20(1)          <-------                                                                 --------->AHL20(2)      --------->YAB1                                                                 --------->ATHB51       <---------YAB1                                                                 <---------ICU4        --------->AHL20(1)                                                                 <--------ATHB1        --------->AHL20(2)           <----------DOF2     --------->ATHB12                 <---------ATHB51       <---------AHL20(2)        <---------ARR11(3)    <---------YAB1                    --------->ICU4        --------->YAB1     <-------GAMYB       <---------ANAC46                <---------ANAC58         --------->AHL20(2)   <------NtERF2<---------ANAC58                         <---------ANAC58         <---------AHL20(2) --------->ALFIN1   <-----------RAV1(1)             <---------DAG2                --------->AHL20(1) -----GT1<---------YAB1<---------ANAC46             <----------DOF2<---------YAB1--------->AHL20(2) --------ANAC46 <---------ANAC58                 <-----------GT1<---------ATHB12 <---------AHL20(2)   tgggtggggttatctttgtcttgtgttgtgttttcattggtcactaaaatttgactttttcgtccaataatttttgaactcaattaaattataataaact  4346400                                  --------->AHL20(2)                                  --------->AHL20(1)                         <---------TOE2(3)                        ---------->DOF2                      --------->ANAC58                      <---------YAB1--------->YAB1           --------->ANAC58                   <---------AHL20(2)       <-------TEIL   ---------->DOF2                   --------->AHL20(2)   --------->DAG2   <xxxxxxxxxxxxxxxxsmallRNA(s)                   <---------AHL20(1)   <---------------AtSPL8 -----DAG2<---------At4g35610    --------->YAB1        <------ZmHOX2a(2)                    --------- ------DOF2        --------->AHL20(1)  ---------->DOF2--------->AGP1            --------------------- ----GT1  --------->At4g35610  --------->AHL20(2)   --------->MYB59         ---------->DOF2--------->AHL20(2)   tttttttttgtcatctgataatttattaaagaaaaaaataataaagtacatagttagatccaaaagccaagtagaacagaaagagaaacaaaataaaaga  4346500                                        ------>ZmHOX2a(1)                           <-----------GT1  --------->MYB52(1)     <---------AHL20(2)                                                     ----- ->DOF2     <-------TEIL *TSS   <-----------GT1                  --------->RAP2.6(3)            <---- --->ANAC81--------->CCA1(2)  <----------DOF2     --------->ATHB12   <xxxxxxxxxxxxxxxxsmallRNA(i)   gaaacaacgagagatacaaaatgaaatttaaactttactctcctcaaacacttgattgtgaaaccatgaaggctctccaagtgctatgtaagactgaaac  4346600                                              <---------ANAC58                                          --------->GLK1(1)                                          --------->CCA1(2)                                          <---------GLK1(1)                                         <---------ARR14(2)                                 <---------TOE1(2)                                 --------->LBD16                               <---------LBD16<---------ANAC58     <---------KAN4(2)     --------->ANAC46                               --------->TOE1(2)  <---------MYB46(3)                     --------->ANAC58                   <---------HSFB2a(2)   <---------GLK1(2)     <---------ANAC55(2)       --------->ANAC58    <---------ANAC58          ------>ZmHOX2a(2)   --------->MYB52(2)                  ------->TEIL    <---------ANAC58        >>>>>>>>>>GATA-1  <---------ANAC46 --------->ANAC55(2)    ----------->RAV1(1) <----------DOF2   <---------HSFC1(1)    --------->ARR14(2)   <---------LBD16 <-------TEIL ---->HSFB2a(1)    --------->HSFB2a(2) ----------->ARR10     --------->MYB52(1)     --------->ZAT18 -----HSFB2a(1)    --------->HSFC1(1)<------ZmHOX2a(2)      ----------->HVH21--------->CCA1(2)   cttctttcttgaatcacacttcgagaaatggatcgcgcgatcagatttgcgtttgtggcaatatgacggaatgtacaagattcaaatgcaccagcaatct  4346700                                                                        --------->KAN4(2)                                                                       <----------TaMYB80                                                                       <---------KAN4(1)                                                                       <---------GLK1(1)                                                                 <---------At4g35610               --                                                                 --------->At4g35610               <-                                                        --------->DOF5.7(2)                        <-                                                       <----------DOF2<---------ARR14(2)           --                                                      <---------ANAC46<---------ARR11(3)           <-                                                 --------->MYB52(1)   --------->ARR14(2)           <-                                             <------NtERF2      ------>NtERF2                      ==                                          --------->At4g35610   <---------RAP2.3(1)                <-                                          <---------At4g35610  <---------DEAR3(1)                  --                                        <---------RAP2.6(2)    <---------RAP2.6(2)                 ==                          ---------->DOF2<---------ATERF1(1)   <---------RAP2.3(2)                <--             --------->MYB46(3)         <---------DEAR3(1)    <---------LBD16                   -----        <---------At4g35610            --------->RAP2.6(3)   <-----------RAV1(1)      <-----------GT1   <---------GLK1(1) ------>ZmHOX2a(1) <---------ORA47(1) <---------DOF5.7(2)        --------->YAB1<-   catggatttgtgctaaccaattcctgtagaaaggccatttggacggctgcaaaacggcgttaactgcggctggatattccaactctattatcaccttgga  4346800      --------->ARR11(3)      <---------ARR14(3)      <---------ARR11(3)      --------->ARR14(3)      <---------ARR14(2)      --------->ARR14(2)                                                             <---------ANAC46     --------->RVE1(1)                                                               <---------ANAC58 ------->O2                                                                          <---------ANAC58 --------O2                                                                   --------->ANAC58 --------TGA1a                                                                --------->ANAC58 ------->TGA1a                                                              <---------DOF5.7(2) --------ANAC46                                  <---------At4g35610       --------->ARR14(2) --------ANAC58          ------->GAMYB         ---------->CDC5             <---------ARR14(2) ================================MYC_MYB    --------->ZAT2                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------ANAC58         --------->MYB46(3)  <---------ZAT2                --------->DOF5.7(2) --------->GT1          <---------MYB52(2)  <---------At4g35610         <---------ANAC58 ============================bZIP_DOF   <---------ALFIN1                <---------ANAC46 ---------------------TaNAC69(2)       <---------At4g35610    ------>ZmHOX2a(2)  ------->TEIL ------>TGA1            <---------MYB55(2)  --------->At4g35610         <---------ANAC58 <---------AtLEC2 --------ANAC55(2)<----------DOF2      --------->At4g35610  --------->ARR11(3)--------->ANAC46<------   gacgtgaatatcttgaaatgctttcaacgaccgtagaatgcagcacagctcagcccctgttcgatcttgaattggcgtaaacgcatctcgtgcatggtgt  4346900                                                                                                   --           --------->ARR11(3)                                                                      <-           <---------ARR11(3)       <---------ALFIN1                                  --------->ARR11(3) <---------ANAC58                   --------->ANAC46                             <---------TOE2(3)<-- <---------ANAC58                 <---------ALFIN1          ---------->DOF2 ------->TEIL          --- ---ANAC46<---------CCA1(2)     ------>ZmHOX2a(1)<---------AHL20(2)       <-------TEIL<---------ARR11(3)   ttagcttgccctatatctcttacaattcaagctcctccacacatcgattgtttatttatccaaaaagaattcaaaatgcatttaagaataccttcttggg  4347000  Previous    Next  AGI:  At2g10990.1    Description:  pseudogene, hypothetical protein Range:  from: 4346525    to: 4347506    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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