Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->YAB1                                        <---------HSFB2a(1)                       -------->HAHB4                                        --------->HSFB2a(1)                      --------->ICU4                                  <---------ARR14(2)               ---------->DOF2             >>>>>>>>>>>>>>>>>LFY       --------->ARR14(2)           <---------At4g35610           <-----------GT1            --------->LBD16           --------->At4g35610       --------->AHL20(2)           <---------LBD16    <---------------------WRI1       <---------AHL20(2)      ------->TEIL    <---------HSFC1(2)    -- --------CCA1(2)    --------->YAB1   --------->AHL20(1)   <---------ANAC46   --------->HSFC1(2) <----   catatcatctatgagctcaaagtaataatacaagggaaattttttacccattggctattggtgtatgttccggtttcgaaatttctggttctcatgtact  4303000                                                                                                    <                                                                                                    <                                                                                                    -                                                   <---------YAB1                                  --                                               <---------ANAC58                                    --                                               <-------GAMYB                                       <-                                               <---------ANAC58                                   ---                                              <---------MYB46(3)         <---------TOE2(3)     <-----                                             --------->MYB59      <---------------AGL15       -------                                             <---------AtMYB61    --------------->AGL15       <------       --------->TOE2(3)   <---------At4g35610<------MYB46(1)     <----------DOF2          ------>MYB83 --------->GT1             --------->At4g35610<------MYB83     <-----------GT1             ------>MYB46(1) -------RAV1(1)---------->DOF2        --------->MYB52(1)<---------AHL20(2)               <---------MYB59   gttgtaaattcttaaaccaaagaaatatcagcagttatactaatggtttggttgtgatttttttttttctttatcaaggatggagttatgaccaaattaa  4303100          -------->HAHB4          <--------ATHB1          --------->YAB1          <--------HAHB4          --------->ATHB51          <---------ICU4         --------->ICU4         --------->AHL20(2)         <---------YAB1         <---------ATHB51       --------->YAB1                                                     <---------LBD16      <---------YAB1                                                      --------->LBD16     --------->AHL20(2)                                                  <---------ANAC46     <---------AHL20(2)                                            --------->ARR11(3)    --------->YAB1                                                 <---------ARR11(3) ---------AHL20(2)                                                 <---------AHL20(1) ---------YAB1                                                     --------->AHL20(1) -------->AHL20(2)                                           --------->ANAC46 ------->AHL20(1)     <---------At4g35610                  --------->MYB52(1) ------->AHL20(2)     --------->At4g35610                  <---------DOF5.7(2) --------AHL20(1) <-----------HVH21                   --------->ICU4    <---------LBD16 ------>YAB1   <---------ANAC55(2)          <---------HSFC1(2)------->GAMYB ----AHL20(2)  --------->ANAC55(2)     <---------TOE2(3)  <---------WRKY38(1) -->AHL20(2)   <---------ANAC55(1)     <---------TOE1(3) --------->DOF5.7(2)                     <--- ---AHL20(2) <---------AHL20(2)   <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <-----   atataattttaataattaagtgtcatttgactcttactttcaaggtaacttcggtaatggttaacggaatattttacggggaatttcaaaatgggttatg  4303200                                                                                                  ---                                                                                              -------                                                                                      ------>ZmHOX2a(2)                                                                                      xxxxxxxxxxxxxxx                                                                                    <---------ARR14(2)                                                                                    <---------ARR11(3)                                                                                    --------->ARR14(2)                             <---------YAB1                                <-----------GT1   --------                     <---------ANAC46                               <---------TOE2(3)<------ZmHOX2a(2)                     <---------ANAC58                            --------->ARR14(2) <---------AGP1<--            --------->AHL20(2)                                   <---------MYB52(1) <-----------ARR10        --------->AHL20(2)<<<<<<<<<MYB2                     --------->ARR14(2)      --------->GLK1(2)     <----------DOF2 <---------ANAC58                       <---------ARR14(2)      --------->ARR11(3) ------AtLEC2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ----------------->AG    --------->LBD16 ----- ----YAB1   <---------AHL20(2)--------->YAB1   ----------->GT1   <---------ARR14(2)<------ZmHOX2a(1)   catggctcttttatataaatatgccttggttttcataagaaaaaacataagtttaaaatccaaatcggttatggattttacccgaggatctatgctagcg  4303300                                                          ----------->GT1                                                         *TSS                                                        <---------ARR11(3)                                                        --------->ARR11(3)                                                      <---------YAB1         --------->HSFB2a(2)                    <---------AHL20(2)         <---------HSFB2a(2)<----------DOF2   <---------YAB1<---------ZAT6                         <- ------>ARR14(2)   ---------->DOF2           --------->AHL20(1)                               ------- -->At4g35610     <---------WRKY12           --------->AHL20(2)                               ------- xxxxxxxx>smallRNA(si3)    <---------DAG2  <---------ARR11(3)                                -------- ->MYB52(1)       <---------WRKY38(1)      --------->AHL20(2)                               --------- -------ARR14(2)  <---------WRKY45         --------->AHL20(1)                  <---------TOE2(3)   -- ---->LBD16     <-----------HVH21          <---------AHL20(1)                  <---------TOE1(3) ----   gaaatggtcttagggaagggtcaaagcacccttttgaaaaaacaaaatattatatgaagatagtattaagttggaattgtcaaggtttagggaataaagc  4303400              --------->LBD16             <---------ANAC55(2)      <---------MYB52(1)    ----------->GT1                                 <---------YAB1 --------->MYB52(1)                                <---------AHL20(2) ------------>MYB.PH3(1)                         <---------YAB1 --------MYB52(2)      ----------->GT1         <---------AHL20(2) -->ANAC58   --------->ANAC55(2)              <---------AHL20(2) -->ANAC58  <---------LBD16               <---------RVE1(1) ->DAG2    <-----------GT1               <---------GLK1(2)                                       <--- ->DOF2 --------->MYB52(2)               --------->ARR14(2)                                      <--- ------->MYB46(3)     <---------TOE2(3)  <---------ARR14(2)                                  <------- ------->RAV1(1)  <----------DOF2        <---------ARR11(3)                                <---------   aacaatcggttatttacgggatttatggaaaaaacatcggccagattttttatttttatcggaaacaaaacaatctacttcttatatggaaaactttgtt  4303500                                                                           --------->ATHB12                                                                           <---------ICU4                                                                          <---------YAB1                                                                          --------->ICU4                                                                        <---------ICU4                                                                        --------->YAB1                                        <---------ANAC58                -------->HAHB4              -                             ----------->HVH21     <---------MYB46(3)  --------->ICU4       ---------                             --------->WRKY38(1)  <---------AtMYB61   <---------AHL20(2)    ---------  --------->ICU4             --------->WRKY12   <---------MYB46(3)   --------->YAB1         <-------- ---MYB46(1)               --------->At4g35610 <---------AtMYB61    <---------YAB1          <--------HAHB4 ---MYB83             --------->MYB46(3)<---------ANAC58     <----------DOF2   --------->AHL20(2)  -- ----RAV1(1)     --------->TOE2(3)     <---------MYB46(3)<---------At4g35610   <---------AHL20(2) <-- -DOF2 <---------ANAC46----------->RAV1(1)     --------->ALFIN1   ------>ZmHOX2a(1)        <---------ATHB12   ggtcattttgggtataaaaacttaacaacagttgaccctattggttgcagtggtggtttagctctttcctataataatgattttaatgacacaatcattt  4303600                                                                                      --------->MYB52(1)                                                                                    ---------->DOF2                                                                                 <---------HSFB2a(2)                                                                                 --------->HSFB2a(2)     --------->ATHB12                                                         <---------ARR14(2) --------->DOF2                                                               --------->ARR14(2) >ATHB12                                                  --------->TOE2(3) --------->LBD16 >YAB1   ----------->GT1                           <---------ARR11(3)   <---------ARR14(2) -ICU4 <---------WOX13(1)            <---------TOE2(3) <-----------GT1  --------->ARR14(2) ------->YAB1               ----------->GT1  <---------YAB1<----------DOF2<---------LBD16 -------YAB1   <---------WOX13(1)  ---------->DOF2 --------->ARR11(3)  <---------GLK1(1)   atcaaagtaattggttaattgacattgaagtcgtttataaaggtattacaataaatcttacctttgtttatggagacccggttccaaaaaacagagaaca  4303700                --------->ANAC58                --------->ANAC58                                                    <---------YAB1                --------->ANAC46                                                    ----------->GT1              --------->ZAT6       <---------SPL7                                 <---------ICU4         --------->At5g28300       <---------ZAT18                      <---------AHL20(2)         <-------GAMYB        <---------LBD16                          --------->AHL20(2)        ----------->GT1    <---------ARR11(3)                          <---------AHL20(2)      <-------TEIL <---------ARR14(2)                              --------->AHL20(2)        --------      --------->SPL7  ----------->GT1                            <---------TOE2(3)--------->YAB1    <---------SPL7 --------->ARR14(2)                      --------->ARR11(3)  <---------GLK1(1)   <---------ANAC58--------->GLK1(2)       <---------TOE1(2)  <---------AHL20(2) <---------ATHB12 ---   <---------ANAC58------->TEIL<---------LBD16             <---------ARR11(3)  --------->GLK1(1) ----  <---------------AtSPL8   --------->ARR11(3)           <------ZmHOX2a(1)---------->DOF2 ---------->DOF2  <---------------AtSPL3  <---------CCA1(2)<---------TOE2(2)  --------->AHL20(2) --------->ICU4 -----   agtttgggtacggttaacacgaatcggtatatctcggggtactccttggtttttagtaggagattttaatgaattaaaaggaaatcatgaaaaaagaggg  4303800                                           --------->CCA1(2)              ------->TEIL               -------->HAHB4           --------->ANAC58              --------->YAB1                                           <--          ------->MYC2                 <---------TOE2(3)                                        <----          <-------MYC3               <---------AHL20(2)                                         <----          <-------MYC2              <---------AHL20(1)                                          <----    <-----------GT1                 --------->AHL20(2)             <---------ZAT18             <----- ->ALFIN1 ------->MYC3              --------->AHL20(1)             --------->ZAT18       --------->ARR11(3) ------>At5g28300                   <---------AHL20(2)           --------->GLK1(1)   <------MYB46(1) ------->GT1<-------TEIL <-----------GT1<---------YAB1           <---------GLK1(1)   <---------MYB46(3) ------>GT1--------->ANAC58  <----------DOF2              <----------DOF2            <------MYB83----   ggtaaattaccacatgcatcttcgtttatacctttcaatttaatgatacaagattgcagacttttggagttccctcatcttggagattggttatcttggc  4303900  Previous    Next  AGI:  At2g10910.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.5e-24 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 4303357    to: 4307955    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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