Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------ATHB12                                                                           <---------RAP2.6(3)                                                                           --------->ANAC58                                                                           ------>NtERF2                                                                           --------->ANAC58                                                                           --------->LBD16                                                                          --------->RAP2.6(2)                                                                          <---------ATERF1(2)                                                                    <-----------RAV1(1)                                                                --------->LBD16 --------->ICU4                                                              <---------LBD16  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                        --------->MYB59   --------->ATERF1(2)                                                      --------->ARR14(1)  <---------DEAR3(1)                                                     --------->ARR11(1)  <---------ANAC46                                                     --------->ARR14(2)  <---------ORA47(1)                                                     <---------GLK1(2)----------->HVH21                                                     <---------ARR14(2)  --------->ATERF1(1)                                                    <------ZmHOX2a(1) --------->ALFIN1            <--                                                  <---------TOE2(3) <---------MYB46(3)           <---                                                  <---------TOE1(2) --------->ALFIN1             ----                                                  <---------TOE2(2)<---------DEAR3(1)   =============   <---------GLK1(2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <------ZmHOX2a(1) --------->ANAC58                               xxxxxxxxxxxxxxxx>smallRNA(i)<------NtERF2        ---- --------->ANAC58                             <---------ZAT6  --------->ATERF1(1)---------->DOF2----- --------->ANAC46                      --------->AHL20(2) <---------MYB52(1)------------>CBF<--------   cacaagaaactcaccattaaaactctctccctcttgggagaataaatagtcttaggattcggtagccgggctgtggccggcaataaagaaggagggtcag  4244400                                                                                          ------>ZmHOX2a(2)                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                               --------------------->WRI1                                                                               <----------DOF2     ------>MYB46(1)                                                          ================HOX2a_HOX2a     ------>MYB83                                                             ------>ZmHOX2a(2)     --------->MYB52(1)                                                      =================HOX2a_HOX2a   <---------MYB111(1)                                                       <------ZmHOX2a(2)   <---------MYB46(2)                                                       <---------ARR11(1)   <---------MYB59                                       ===========================HOX2a_HOX2a   --------->AtMYB61                                     ============================HOX2a_HOX2a ----ZmHOX2a(2)                                          <------ZmHOX2a(1)  --------->ARR11(3) ------ARR14(2)       <--------P                      <---------HSFB2a(2)   <---------ARR11(3) ----->ARR14(2)     <------MYB83------>ZmHOX2a(1)     --------->HSFB2a(2)   --------->ARR14(2) ====HOX2a_HOX2a    <------MYB46(1)  xxxxxxxxxxxxxxxx>smallRNA(s)           <---------ARR14(2) ----->AGP1--------->HSFB2a(2)------>ZmHOX2a(2)    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <------ZmHOX2a(1) ---->At4g35610    --------->MYB59   <----------DOF2  >>>>>>>ZML2          <---------CCA1(2)  ------- ---HVH21  <---------HSFB2a(2)==================================HOX2a_HOX2a<---------ARR14(1) <------   atcgacctaacctcgagaaggaaggtaagtgatcctagactttgagtctaagggttctaggatgtgagttagtagtcggatctttgaaaggatcgactag  4244500                                                                            <---------ARR14(2)                                                                           <---------ZAT2                                                                         <---------DEAR3(1)                                                                       <---------ATERF1(1)                                                                       <---------bZIP60(2)                                                                     ------>NtERF2                                                                    ----------->HVH21                                                                   <------NtERF2                                                                   --------->ATERF1(1)      <--------                                                                 <---------ANAC58        <xxxxxxxxxxx                                                                 --------->ALFIN1        <---------DEAR3(1)                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)  <-----                                                          --------->At4g35610          <---------ARR14(2)                                                          ----------->RAV1(2) ---------->CDC5<-------                                                          <---------At4g35610 <---------DEAR3(1)                                                        =====================================HOX2a_HOX2a                                                      <---------ARR14(2)<---------LBD16--------->ARR14(2)                                                    xxxxxxxxxxxxxxxx>smallRNA(s)<---------LBD16------                                                   <------MYB46(1)--------->LBD16     <------ZmHOX2a(1)                                                   <------MYB83  <---------ANAC58  <------NtERF2                                                 <--------P     <---------LBD16 <------NtERF2------>NtERF2                                                <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ARR14(2) <-----                                             <---------ANAC46 xxxxxxxxxxxxxxxx>smallRNA(i)  <--------                                          <---------SPL7------>ZmHOX2a(2)xxxxxxxxxxxxxxxx>smallRNA(s)                                          <-----------HVH21 xxxxxxxxxxxxxxxx>smallRNA(s)--------->DEAR3(2)                       <-------TEIL   xxxxxxxxxxxxxxxx>smallRNA(s)<---------ATERF1(1)----------->HVH21                     <-------MYC3     <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i)<------NtERF2                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ARR14(2)--------->ATERF1(1)<---------MYB52(1)            <---------LBD16xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s) <---------LBD16          --------->ARR14(2)   --------->ANAC46 --------->REM1(2)<---------ANAC46<---------DEAR3(1)          <---------ARR14(2) ==================================HOX2a_HOX2a <------NtERF2xxxxxxxxxxxxx      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------LBD16<----------CDC5 --------->ZAT2<xxxxxxxxxxx   <---------MYB46(3)------->MYC3--------->ANAC46--------->ALFIN1<---------DEAR3(1)--------->ATERF1(1) -->HSFB2a(2)   <-----------HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ATERF1(1)<xxxxxxxxxxx ---HSFB2a(2) --------->LBD16------>ZmHOX2a(1)--------->LBD16xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxx   aaggctgggtagtatccgggtcatgtgcatcctacacaagactcggtccgggtagggatcggctgaggcggggacgcggctcggcggaggaccggcgggt  4244600         ------>MYB46(1)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxx>smallRNA(i)      <---------bZIP60(2)      <---------At4g35610      <---------ANAC58 <---------RAP2.6(3)      <---------ANAC58 <------NtERF2                                       <---------ANAC46      --------->At4g35610                                                  <---------ZAT6     <xxxxxxxxxxxxxxxxsmallRNA(s)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ------->GAMYB   <xxxxxxxxxxxxxxxxsmallRNA(s)                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ----------->HVH21  --------->RAP2.6(2)                          xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(i)              <---------ALFIN1       ------>ZmHOX2a(2) -DEAR3(1)      --------->ARR14(2)    xxxxxxxxxxxxxxxx>smallRNA(i)<------ZmHOX2a(2) xxxxxxxxxsmallRNA(si3)<---------SPL7 ------>ZmHOX2a(2)          --------->ARR14(2)             <---- ----ARR14(2)   --------->GLK1(2)    <------ZmHOX2a(2)           <---------ARR14(2)             <---- --MYB46(3) ------>NtERF2           <---------ARR14(2)        --------->ANAC58                  <---- --->ARR14(2)  <---------GLK1(2)    --------->ARR14(2)        --------->ANAC46                  <---- ------ARR10--------->LBD16         <---------ARR11(3)        --------->ANAC58              <-------- -ANAC46 ------>MYB83xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->ANAC55(1)       xxxxxxxxxxxxx xxx>smallRNA(i)<---------ARR14(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxsmallRNA(si3)          --------->ARR11(3)        --------->ANAC55(2)   <xxxxxxxxxxxxxxxx xxxxxxxxxxxxsmallRNA(fl3)       --------->LBD16             <---------LBD16       xxxxxxxxxxxxxxxxxx xxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------REM1(2)      <---------ANAC46xxx   cttaactgacctgccgagaatcggccggactgatgcgcgatcttcccctctctgaattctcttcacggatccgagtagtgtatggcatatagagcattgc  4244700  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------->TEIL -----AtLEC2                    =============================RAV -----ANAC58                    <-----------RAV1(1)                               <---------ANAC58 -----ANAC58      --------->AHL20(2)                               --------->TOE1(2)      <------NtERF2 -----ANAC46    <---------ANAC55(2)                               ================HOX2a_HOX2a ----CBF  <---------YAB1      <---------ANAC58              --------->YAB1        <---------ANAC46 xxxxxxxx>smallRNA(i2)        <---------ANAC58      =====================HOX2a_HOX2a     ------>NtERF2 xxxxxxxsmallRNA(fl3)         <---------ANAC46      <------ZmHOX2a(1)             <---------ANAC58 xxxxx>smallRNA(i2)           <---------ANAC55(1)<-----------RAV1(2)       <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <----------DOF2 *TSS------>ZmHOX2a(2)  xxxxxxxxxxxxxxxx   atggacttgcatatgattaagtaaatgagattacttgtggctctatgactttcaggagcgaatggtgatcgtgggaaggacttggcttaggcgcgagaga  4244800                  <------MYB83<-------GAMYB                  <------MYB46(1)                  <---------MYB46(3)                 <---------AtMYB61                 <---------DEAR3(1)                 --------->ALFIN1               <---------ANAC58<---------MYB52(1)                <---------ANAC46               <---------ANAC58<--------P                        <---------ANAC58                 ---              <---------MYB46(3)                           <---------YAB1                         <--              --------->MYB55(2)                       <---------ANAC46                       <------           --------->ATHB12  <------MYB46(1)           <---------ANAC58                       -------          --------->ICU4     <------MYB83              <---------ANAC58           <---------TOE2(2)      <------NtERF2 <---------YAB1              --------->AHL20(2)            xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxx>smallRNA(si3)      --------->MYB59 ------>ZmHOX2a(2)    <---------ANAC58 <---------TOE1(2)   ctcaaggccgagatgatgggtggtgatagttcggttagtctagggatcgattatatgacttgtaatagcttatatgcaaactcataggttgtatcgaatc  4244900                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            <---------ANAC55(2)                                                            --------->ANAC58                       <x                                                            --------->ANAC58                      xxx                 --------->GLK1(2)                          --------->ANAC46                    -----       <---------ATHB12                                     --------->ANAC55(2)                xxxxxx  <---------ANAC58                                          --------->ANAC55(1)               -------  <---------ANAC58    <---------MYB52(1)                   <---------LBD16                   -------- --->ZmHOX2a(1)  --------->ARR14(2)                       --------->MYB52(1)                 <------- --------DOF2    <---------ARR14(2)              <---------AHL20(1)                      ---------->DOF2 ---ARR14(2) --------->DAG2       --------->ZAT6 --------->ARR11(3)      --------->MYB52(1)---------- -->ARR14(2)---------->DOF2     <-----------GT1 <---------CCA1(2) --------->YAB1        <------ZmHOX2a(1)   ctttgcttaatcaataaagtatccgattgtttgtttactctattcgtctcatatattgaatcacggaatcatatggaacggattagactaggaaagaacc  4245000                  <xxxxxxxxxxxxxxxxsmallRNA(s)       xxxxxxxxxxxxxxxx>smallRNA(s)       <---------MYB52(1)  --------->MYB52(1) <xxxxxxxxxxxxxxxxsmallRNA(s)  ------------>MYB.PH3(1)    <---------ANAC58 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---->TOE2(3)    <-----------HVH21      xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ETT(2)   <----------DOF2     ------>NtERF2 >TEIL<-----------HVH21      <---------ANAC58      --------->LBD16   <-----------HVH21            <-- ->ARR14(2)    <------NtERF2 <---------ANAC46    --------->SPL7    <------NtERF2                  <-- --GLK1(2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------LBD16 <---------ZAT18                 ---- ->ARR10 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------SPL7  <---------SPL7 <----------DOF2   <----   tcataaacggttagggccgagtcacttagtggcttgggtcgagagaactcgtccggactttaggcagtccgcatcggggcctttcaaagtatcagagcat  4245100                                                                 <-------GAMYB                                                                <---------MYB46(3)                                                                --------->MYB52(2)                                                                --------->MYB111(1)         <------ZmHOX2a(1)                                      --------->MYB111(2)      <---------HSFB2a(2)                                  <---------LBD16      >>>>>>>ZML2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->At5g28300      <---------HSFC1(1)                              <-----------ARR10      --------->HSFC1(1)                              --------->ARR14(2)      --------->HSFB2a(2)                             <---------ARR14(2)       <----------DOF2 <------MYB46(1)     <------MYB46(1)           <---------ANAC46 --------->MYB55(2) <------MYB83        <------MYB83              <---------ANAC58<--------P <-----------GT1 -------ANAC58       <---------ANAC46          <---------ANAC58<---------MYB55(1)               <---- -------ANAC58     <---------ANAC46        <---------MYB52(1) <---------MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(i) ----->ATHB12   <-----------RAV1(1)  <---------ALFIN1 --------->GLK1(2) <----------DOF2   <---------- -----YAB1      --------->ALFIN1  <-----------GT1    <---------GLK1(2)<------------------------ANAC81   gcttggttctaggactaggtgttgggttaaggggtatcaccactcgttggcttgagaatctcgcggtagttgttctttactcttttgcgattttactagg  4245200                            <---------ZAT2                            --------->At4g35610                            --------->ZAT2                        <---------ANAC46      --------->MYB52(1)                                  <--                        xxxxxxxxxxxxxxxx>smallRNA(i)    ----------->GT1                     <-------GAMYB                     --------->ARR14(2)   --------->At4g35610                <xxxxxxxxxxxxxxxxsmallRNA(s)  <---------ANAC46   <---------ARR14(2)  ----------->RAV1(1)     <------ZmHOX2a(1)         <---------MYB46(3) --ZmHOX2a(1)--------------------->WRI1--------->At4g35610      <----------ID1     <------ZmHOX2a(1) -GT1        <----------DOF2<---------At4g35610     ---------->DOF2     --------->ZAT18 <----------DOF2   agttatgtggattaactttggaggtttcgcagatgggtaagagcagcaaaacgggaaagagtaagaaggacaagggcattgtcgaggagactttggttga  4245300  Previous    Next  AGI:  At2g10780.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica) Range:  from: 4244762    to: 4250137    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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