Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------ANAC46         --------->At4g35610    --------->At4g35610 -------->MYB52(2)                                                                            ------- ------>GT1                                          --------->ATHB12                       <------MYB83 ---ANAC58  ---------->DOF2                   <---------ANAC58                              <------MYB46(1) ---ANAC58 --------->ALFIN1<----------DOF2    <---------ANAC58   --------->ZAT18           <---------AtMYB61 ---ANAC46 <---------REM1(1)                 <-------TEIL       --------->ALFIN1           <---------DEAR3(1)   gttatttgctgaggtgaagccctaatctactttgaagtataaataggtgcttaagtcattgagagagtgtgcgagacattttagagagtttgggaggtgt  4238200                                                                          ------>ZmHOX2a(1)     <----                                                              <---------ZAT14                   <----                                                              --------->ZAT18                   <----                                                         --------->ZAT14 --------->TOE2(3)      <----                                           <-----------RAV1(1)--------->ZAT14        <---------ZAT14     ---------->DOF2                     <----------DOF2 <---------ZAT14 --------->TOE2(2)     ------ -->ALFIN1    --------->YAB1     <-----------GT1   --------->MYB52(1)   --------->YAB1 <---------ANAC46   taagagagaaagctattcatagtataaacttgtattaactgttctttgtgggataacagagtagtgcagagcaatcctaagtactagtgaagggtattag  4238300                                                                             ------>MYB46(1)                                                                             -------->P                                                                             ------>MYB83                                                                           <---------MYB111(1)                                                                           <---------MYB59                                                  <---------HSFB2a(2)      --------->MYB46(3)     <---------ANAC58                             --------->LBD16          <---------MYB46(2)     <---------ANAC58                             <---------LBD16          <---------MYB111(2)     <---------ANAC46                        <---------ARR14(2)          <-----------ARR10--------->ZAT14 --MYB46(1)                                  --------->ARR14(2)          ------->TEIL     --------->ZAT18 -----ANAC55(1)                     --------->GLK1(2)                --------------->AtSPL3 -----ANAC46                       <---------GLK1(2) <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --MYB83--------->REM1(2)       --------->YAB1   <---------ANAC46 <-----------RAV1(2)     <---------ZAT14 --->MYB111(1)            --------->ZAT6   <---------ZAT18     ------>NtERF2--------->MYB55(1)   gtgtattgcttgtagactcttgttgtaaacactataagattctagtggattccgaggagagtctcggcccagacgtacctaccctatgggagtgaactgg  4238400            <---------ANAC46          <---------ANAC58          <---------ANAC58          <---------ANAC46     <---------GLK1(2)     <---------ARR14(2)     --------->ARR14(2)    ------>MYB83                           --------->AtLEC2    ------>MYB46(1)                      <---------ANAC58                                   <-------TEIL  <---------MYB59                        <---------ANAC58                          --------->GLK1(2)   gttaccaaattctcgtgtgtgttctctattttgtttctctatttcttgcaaagtcttgttcttcttacaaacattcttgaacgagtttctgaagtacatc  4238500                           <------ZmHOX2a(2)                          <---------AGP1                          --------->ARR14(2)                                                        <                          <---------ARR11(3)                                             <---------WOX13(1)                          --------->ARR11(3)                                            <------------CBF                          --------->GLK1(2)                 --------->O2                <---------GLK1(2)                          <---------ARR14(2)                <---------O2              <XXXXXXXXXXXXXX                         <------ZmHOX2a(1)          ---------->DOF2          <---------MYB52(1)     -                      >>>>>>>ZML2                ----------->GT1           <---------ANAC58         <              <---------AGP1------>ZmHOX2a(2)   --------->DAG2             <---------ANAC58<------MYB83       --------->ZAT14<---------HSFB2a(2)      ---------->DOF2          <-----------RAV1(1)<------MYB46(1)  <---------CCA1(2)   --------->HSFB2a(2)      <---------ZAT14  <----------DOF2    --------->MYB52(1)   actcatctctgaagtagttctgttctaggatctgttttgagtcactgagtaaagtaaagtcgacgtctttagttctgtcgtttcttaacagattggtatc  4238600                                            ------>ZmHOX2a(2)                                           <------ZmHOX2a(2)                                          <---------ARR14(3)                                          --------->ARR14(3)          <------MYB46(1)                 <---------ARR14(2)          <------MYB83                    <---------ARR11(3)         <---------AtMYB61    ---------->DOF2        <--------P         <---------HSFB2a(2)      <-----------RAV1(1)  --------->HSFB2a(2)                                                  <---- ---------ZAT14         --------->ARR14(2)--------->AGP1   --------->REM1(1)                <-------GAMYB XXXXXXXMIR845B         <---------ARR14(2)<---------AGP1<---------ETT(2)                   --------->MYB52(2) -------->ZAT14       <---------MYB46(3)  --------->ARR14(2)                               <---------MYB46(3) ---------ZAT18  <----------DOF2   *TSS   --------->ARR11(3)                           <---------AtMYB61   agagcaccatgttggtgttctttgtggttctgaaaagggtttaagatcttgaaccatgtctacaactagaatagaagttgagaagtttgatggtcgttgt  4238700                                                   <---------ZAT14                                                   --------->ZAT14                                                <---------ANAC46                                      --------->AHL20(1)<---------ZAT14                            <-                       <---------MYB52(1)   <---------ANAC58       --------->GLK1(2)               --         --------->ALFIN1             <---------ARR11(3)<---------ZAT18                            <-    --------->ANAC46 <-----------RAV1(1)    <---------ANAC58  ---------->DOF2                  ------  <-----------------AGL1              --------->ARR11(3)--------->ZAT14               <------ZmHOX2a(1) -----YAB1     <------ZmHOX2a(1)  ----------->GT1<---------------AtSPL3           --------->ALFIN1<--   gattacacgatgtggaaggagaactgttggctcatatggatatattgggtctgtgtactgctctcaaagaatcagagagcaagggtgaggagttatcagg  4238800      ------->TEIL                  ---------->DOF2 --------HSFB2a(2)              <---------------------WRI1 ------->HSFB2a(2)           --------->GLK1(2)                                --------->ANAC58 ----------RAV1(2)    ---------->DOF2--------->DAG2      ---------->DOF2      --------->ANAC58    <-- --->At4g35610     --------------->AGL15        <----------DOF2            <------ZmHOX2a(1)   <----- -----TEIL         <---------------AGL15   ---------->DOF2        ---------->DOF2            <-------   tccagacgaatttgatgaagactataaagagaagctcgaaaagttcaaagctttagaagaaaagaagagaaaggctaggagcgccatagttcttagtgtc  4238900                                                                                                  ---                                          --------->ZAT14                                        <---                                          <---------ZAT14                                       -----                                       --------->At4g35610                                      <----                    ---------->DOF2    <---------At4g35610                                      <----              <------ZmHOX2a(1)       --------->DEAR3(1)                      ---------->DOF2   ----- -------WOX13(1)  --------->ARR11(3)<---------At4g35610                     --------->ETT(2)    <---- ----YAB1   <---------TOE2(3)       --------->At4g35610      <---------ARR14(2)                <----- --ZAT6   ------>ZmHOX2a(1)       --------->MYB46(3)         --------->ARR14(2)        --------------   attgatagagtcctaaggaagataaagaaggaatcgacagccgctgcaatgttgttagccttggataggctatacatgtcgaaagcctttccaaatagga  4239000       --------->At4g35610       <---------At4g35610 --->ZmHOX2a(2) ---ZmHOX2a(2)                         --------->ARR14(2) ---->ARR11(3)                         <---------ARR14(2)                         <-----------GT1 -------ARR10                          --------->GLK1(2)                         <---------YAB1 -----ARR14(2)                         <---------ARR11(3)                      <---------ICU4 ---->ARR14(2)               <---------ARR11(3)      ----------->GT1         <---------GLK1(2) -----ARR11(3)       --------->At4g35610       --------->At4g35610      <----------DOF2            <- -ZmHOX2a(1)         <---------At4g35610   <-----------HVH21       --------->GLK1(1)           ====== --->AGL1      <----------DOF2         --------->ARR11(3)          <---------GLK1(1)           <-----   tctatctgaagcagaagctttacagctacaagatgtctgaaaatctgtcagtagaaggtaatatcgatgaattcctttagattattacaaacttagagga  4239100  Previous    Next  AGI:  At2g10760.1    Description:  transposable element gene. copia-like retrotransposon family, has a 6.5e-285 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 4238635    to: 4242713    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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