Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                  <---------LBD16                                                         --------->ATHB12          <---------ARR11(3)                                                             --------->ICU4         <---------GLK1(1)                                                               <---------YAB1         --------->GLK1(1)                                                             <---------ANAC58         <---------CCA1(2)                                                             <---------ANAC58        <---------ARR14(2)                                                          <---------ZAT2        --------->ARR14(2)                                                         <---------TOE1(2)      --------->LBD16                                                             <-----------RAV1(2)    <---------LBD16                        <---------HSFB2a(2)                 xxxxxxxxxxxxxxxx>smallRNA(s)  <---------ARR14(2)              <---------LBD16                             xxxxxxxxxxxxxxxx>smallRNA(i)  --------->GLK1(2)            <---------RAP2.6(3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->ARR14(2)--------->LBD16------>ZmHOX2a(1)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---->DOF2--------->ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(i)                   <---------RAP2.6(3)   agtgaatccggatatctcattccggagtcttgcagtcctggagttagagaagaattttgccaagaaggccattttgcagtcatcccaggtcgtgattgaa  4199600        <---------ANAC58        <---------ANAC58     <---------DAG2        <---------ANAC46 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <--------P   ----------->RAV1(1)                  --------->ANAC58   <---------ANAC58 <-----------RAV1(2)                --------->ANAC58   <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(i)       --------->TOE1(2) -WOX13(1)  <----------DOF2  <----------DOF2    ----------->GT1    <-----------GT1   ttcttgggtagcgtcttttcccacagatgggctttatctccaagtgaaaatggaaacaagcgaagcttgaaaccatcttcacttactccattgattttag  4199700                                              --------->ATHB12                                            ------>ZmHOX2a(1)                                          ------>ZmHOX2a(2)                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                         <------ZmHOX2a(2)                                        --------->ARR14(2)                                        <---------GLK1(2)                      --------->ATHB12                                       <---------ARR14(1)                --------->ANAC46                                   --------->MYB52(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 ------>ZmHOX2a(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <---------ARR11(3)     --------->ANAC58  <---------LBD16 --------->YAB1                               --------->ARR11(3)     --------->ANAC58  ----------->RAV1(2)                  <---------ZAT2 ==================HOX2a_HOX2a------->TEIL----------->HVH21   ----------->RAV1(1)    --------->ICU4<---------ARR14(2) --------->AtLEC2   --------->MYB46(3)<----   taaggccacagagcctctcgagctcgtcaagatgatctagcggatcctccattggcaggccatgaaacttgttcccctgaaccattgcaatgagaccgct  4199800                                                                                           <------MYB46(1)                                                                                          --------->MYB111(1)                                                                                          <---------AtMYB61                                                                                          --------->MYB59                                                                                          --------->MYB46(2)                                                                                         <--------P                                                                                         <---------MYB55(1)                                                                                       <---------MYB46(3)                                                                            --------->At4g35610                                                                           --------->ANAC58<---------MYB46(3)                                                                           --------->ANAC58<------MYB83                                                         <-------GAMYB<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <---------MYB46(3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <---------AtMYB61 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <---------TOE2(3) --------->At4g35610 <-------                                                     <---------MYB46(3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ARR11(3)                       <-------GAMYB     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      ---------->DOF2                             <---------MYB46(3)--------->ANAC58   <------MYB46(1)   ------>ZmHOX2a(2)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <-----------RAV1(1) --------->ARR11(3) --------->ZAT14           xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)xxxxxxxxxxxxxxxxxxxxxx <---------ARR11(3) <---------ZAT14        ----------->HVH21        --------->ANAC58   <------MYB83 ------DOF2  <---------YAB1                ----------->TGA1<---------MYB46(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   tttgatcttaaagttattgttctgtactggacgtagaacaattccatgacgctggttgtggttgtgagggaagtcaccagcaccaatgttggtaggttgc  4199900                                                                                                    <                                                                                                    <                                                                                                <----                                                                                                -----                                                        --------->ANAC58                  --------->ARR14(2)                                                        --------->ANAC58                  <---------ARR14(2)                  <---------At4g35610                 <---------ANAC58                  --------->HSFB2a(1)               --------->TGA2(2)                      <---------ANAC58                  <---------HSFB2a(1)              --------->TOE2(3)                       <---------ANAC46                  --------->HSFC1(2)              <-----------TGA1                       <------NtERF2                      <---------HSFC1(2)              <-----------HVH21                  --------->ZAT2   <------ZmHOX2a(2)   <------ZmHOX2a(1)             --------->bZIP60(2)                 <---------ZAT2   ===========================HOX2a_HOX2a -P  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------At4g35610       <---------TOE2(3) <------- x>smallRNA(si3)  --------->At4g35610            --------->At4g35610       <---------YAB1 --------->GLK1(2)   tcttgctcatcaacaacgtcagctattgtatcggtttctgtctgttctctcagttggcgagcaatacgatcgatgttatcgttgaataggaggttctgat  4200000                      *TSS      --------->At4g35610                  --------->ANAC58      <---------At5g28300       --------->ZAT2                                           <xxxxxxxxxxx    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                ----------->RAV1(2)    ----------->HVH21----------->RAV1(1)                                          xxxxxxxxxxxxxxxxxxx   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <---------ANAC46    --------------->AtSPL8 ---------ANAC58  --------->ANAC46                           <---------ANAC58    --------->ANAC58 ---------ANAC58  --------->AtLEC2           ------->GAMYB   <---------ANAC58    --------->ANAC58 -----GLK1(1)     --------->ANAC58          --------->MYB46(3)      ---------->DOF2 <xxxxxxxxxxxxxxxxsmallRNA(i) ---->GLK1(1)   <---------AtLEC2<---------ZAT2              <-------TEIL       <---------AtLEC2 ----- --YAB1    --------->REM1(2) <---------At4g35610         --------->CCA1(2)  <--------P--------->At4g35610   ttccttgtgaccgtgtatgcatgcaacagatagcagctaggctataacagacgaatcagagatgcgtctgtaaagcaggttgcaaggtacctgaaacaca  4200100                                                                                                    x                                                                                                    <                                                                                                    <                                                                                                  ---                                                                                               ------                                                                 <---------ARR11(3)            ------                --------->YAB1                       <---------TOE2(3)                     ------>MYB46(1)                --------->TOE2(3)                    <---------TOE1(3)                   <---------MYB46(2)       --------->DAG2                               <-----------GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->TOE2(3)  ----------------->AGL3 ------>MYB83      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        --------->TOE1(3) ------>ZmHOX2a(2)     <---------MYB111(2)     ---------->DOF2                             --------->YAB1  --------->ARR11(3)      --------->AtMYB61 xxxxxsmallRNA(s)       <---------ANAC58    <---------DAG2      <---------ICU4          --------->ANAC58 xxxx>smallRNA(se3)     <---------ANAC58    <----------DOF2     --------->YAB1          --------->ANAC58 ----->DOF2------------>CBF               ------->TEIL         <---------ATHB12         --------->ANAC46   aagacagaaaaggcacaatgttagtaacttgtgtaacaaaaacgaactttatcttaacgtttctaatgatctcaaatatagcaaacaaacaccaaactag  4200200      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <------NtERF2    ------>NtERF2   --------->DEAR3(1)  --------->RAP2.3(1) ------->GAMYB                                                                                   <xxx xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------ xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  ---------->ID1                   xxxxxxxxxxxxx <---------ATERF1(1)             <---------AHL20(2)<---------ANAC58                     --------->LBD16 <---------RAP2.3(1)             --------->AHL20(2)<---------ANAC58                   <---------LBD16 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <---------ARR11(3)                 --------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         --------->ZAT6               ----------->GT1   --------- ---------DEAR3(1)              <---------ATHB12 --------->ARR11(3)     <------ZmHOX2a(1)<---------MYB52(1) ------>MYB52(1)              --------->WOX13(1) <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ARR14(2) --->ANAC58         <------ZmHOX2a(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    xxxxxxxxxxxxxxxxx --->ANAC58       <---------TOE1(2)      ---------->DOF2 <-------GAMYB<---------TOE2(3) xxxxxxxxxxxxx   caacggcgccaaattgatagtaggatttttatcaattaatccctaaaacactatcttgtcgttgtagtattttaggatgttaatccaatccggtgtgatg  4200300                                                     <---------DEAR3(2)                                                     <---------MYB46(3)                                                     <------MYB46(1)                                                     <------MYB83                                                    <---------AtMYB61                                                    --------->MYB111(1)                                                   <--------P ------->GAMYB                                                  <---------ANAC58                                                  <-------GAMYB                   ---------->DOF2                <---------ANAC58          --------->CCA1(2)                      <------MYB46(1)         --------->ARR11(3)                      --------->MYB52(2)       ----------->ARR10              --------->ANAC58      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->At4g35610 --------->ARR11(3)    xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->ANAC58      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --->AtLEC2 <---------YAB1            --------->AtLEC2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxx>smallRNA(i2)         --------->ANAC58<------MYB83--------->ZAT6 >ALFIN1 <---------ARR11(3)      --------->ANAC58--------->MYB55(2)           --------->YAB1 xxxxx>smallRNA(si3)   <---------ARR11(3)  ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   -- xxxxxxxxxx>smallRNA(le3)     --------->WRKY18(1)<---------MYB46(3)------>ZmHOX2a(1)          -------   caaacagatgagatatgatcagaaagctcttagtcaagccaagcagaaagttggttggttctaacagtcctagtatgcaataacaaaaatgaaatgaaac  4200400                                                         <---------ATHB12                                                        --------->ANAC58                                                    --------->ANAC58                                                    --------->ANAC58                                                    --------->ANAC46                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                             --------->YAB1                                  ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             <---------WOX13(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxx                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <-----------GT1  <---------ANAC46                     <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxxxxxx                    --------->ANAC58        --------->ICU4--------->YAB1           --------->ALFIN1      --------->ARR14(2)   <xxxxxxxxxxxxxxxxsmallRNA(i) --------->ANAC58         <------ZmHOX2a(1) -------->DOF2      --------->ANAC58     <---------ARR14(2)    ----------->GT1 <---------TOE2(3) xxxx >TEIL<---------ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(i)  --------->WOX13(1)    ------>ZmHOX2a(1)  xxxxx   taaaagcagaaatggcaatggcaggcaagtgaatgacaaagcagaaatgataacaggcaatcaaatggataaacgattcctaaggatgggggtaatcgaa  4200500  Previous    Next  AGI:  At2g10670.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.6e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 4197091    to: 4200022    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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