Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <------NtERF2                                    <------MYB83                                   <---------AtMYB61     <---------ANAC46                                  <--------P     ------>NtERF2                                --------->ALFIN1<---------ALFIN1  <---------At4g35610     --------->ARR14(2) --------->ANAC58 -------ARR14(2)          <---------ARR14(2) --------->ANAC58 ------>ARR14(2)          --------->GLK1(2)  --------->ANAC46 --->ALFIN1              <---------GLK1(2)  --------->SPL7 <-----------RAV1(1) ->O2--------->At4g35610 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --ANAC46               <------ZmHOX2a(1) <---------SPL7<---------MYB52(1) --bZIP60(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --TGA1a         --------->At4g35610<------MYB46(1)    <-------GAMYB ->TGA1a    <------ZmHOX2a(1)   <-----------RAV1(1)   <-----------RAV1(1) --O2<---------At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      --------->LBD16<--   gttctgcagatggaggaatagctgcaggaatctggtgttggtgtcgaacgacacctctgttgtgttgttcaacaccaattgcatccgcgttctactcccg  4179400                      <-----------RAV1(1)                      <---------REM1(1)                                                  --------->ATHB12                    <------MYB83                                                        ------>ZmHOX2a(1)                    <------MYB46(1)                                           <------NtERF2         -                   <---------AtMYB61                                         ------>NtERF2       <---                   <---------MYB46(3)                                       <---------ANAC58    <----                  <---------MYB55(1)                                 <----------DOF2    <---------YAB1             --------->ANAC46                                     <---------ANAC46    ------>ZmHOX2a(2)            ------->GAMYB                                         <---------ANAC58    ===============           <---------ALFIN1                               --------->At4g35610--------->ZAT18   <-----       <------ZmHOX2a(2)                                --------->MYB46(3)  <---------ANAC58   <-----     --------->WOX13(1) <------NtERF2     <---------ALFIN1<---------At4g35610<---------ZAT18   <-----   <------NtERF2  <--------P       --------->DEAR3(1)----------->HVH21     --------->ATERF1(1) <----- <---------ANAC46<---------ZAT2 <---------ALFIN1------->TEIL     <---------LBD16      =============== -------AtMYB61  --------->ZAT2 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC58  <---------ARR11(3)   atggtgtcgatcaacacccagttggtgtcgctcaacaccgagccctactgcatctctaacagctaattgcgcattgaggcgcgcttgatcctcattggcg  4179500        <------ZmHOX2a(1)       <------MYB46(1)       <------MYB83     <--------P    <---------MYB52(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <-----------RAV1(2) ----->ZmHOX2a(1)                                                 <---------CCA1(2) ---NtERF2                                                     ------>ZmHOX2a(1) -----SPL7                                           xxxxxxxxxxxxxxxx>smallRNA(s) ==============HOX2a_HOX2a                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----RAP2.6(2)                               xxxxxxxxxxxxxxxx>smallRNA(i)                      ------ ----ANAC58                            ------>MYB83 <---------ANAC58                           <----- ----ANAC46         <---------ARR11(3) ------>MYB46(1)        --------->TOE2(3)     --------->At4g35610 ----ANAC58         --------->ARR11(3) <xxxxxxxxxxxxxxxxsmallRNA(s)                 <---------At4g35610 ======HOX2a_HOX2a --------->YAB1----------->HVH21  <---------ANAC58            ------>ZmHOX2a(1)  xx   tcctcaggtaggatgagtccatgatcatccaatctctgaccagcctcattgtaggcttgcccatcctcatctctcaaaactccttcagcatcatctctga  4179600                                         <---------ANAC58                                         <---------ANAC46                                         <---------ANAC58                                        <-------TEIL                                        <---------ZAT18                                     <---------MYB46(3)                                     <------MYB46(1)                                     <------MYB83                                     <---------DEAR3(2)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    --------->ALFIN1                                    --------->MYB111(2)                                    <---------DEAR3(1)                                    --------->MYB55(2)                                    --------->MYB46(2)                                    <---------MYB46(3)                                    --------->MYB111(1)                                    <---------AtMYB61    <-----------HVH21              <---------MYB55(1)  xxxxxxxxxxxxxxxx>smallRNA(s)     <---------MYB52(1) xxxxxxxxxxxxxxxx>smallRNA(s)      <--------P --->At4g35610                    <-------GAMYB ----At4g35610                    <---------MYB52(1)                                             <--- xxxxxxxxxxxxxx>smallRNA(s)      <---------MYB46(3)                                        <---------MYB52(1)   tgactctgtcagccattgctaatttctgagtttttcggttggtgcgttcaagttttcccaagtccaaaacaaacaagttgataagctcgttctgttttgt  4179700                                                            *TSS                                                    --------->ANAC58                                  ---------->DOF2   --------->ANAC58                     --------->At4g35610         --------->ARR14(2)     <---------ANAC58<---------At4g35610         <---------ARR14(2)                  --------->ANAC58     <---------ANAC58----------->RAV1(2)       --------->ANAC46                      --------->ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->ANAC58                      --------->ANAC58 ------At4g35610   <---------ALFIN1            --------->ANAC58         ----------->GT1  <---------ARR11(3)   gctccttgtttgcctaggcatacacctgaaacacagaaaagaagaaaacaagaaacgcatgagtaacaaaatagaagtaaaaactagacgaaatctctaa  4179800                                      <------NtERF2                                     ------>NtERF2                                    --------->DEAR3(1)                                   --------->RAP2.3(1)                                  <---------RAP2.3(1)                                  <---------ATERF1(1)                                  ------->GAMYB                                 <---------DEAR3(1)                               --------->MYB52(1)                            --------->ANAC46             --------->KAN4(2) <---------ATERF1(1)            <---------ICU4  --------->LBD16           <---------YAB1   ------>NtERF2           --------->ICU4  <---------LBD16                                                        <--         --------->YAB1    <---------ETT(1)                                                     <----         <---------ICU4   <---------LBD16                                                       -----        --------->ICU4 <---------GLK1(1)                    --------->AHL20(2)                  <----        <---------ATHB12  --------->RAP2.6(3)     <---------AHL20(2)                           <-----    ------------>CBF   --------->GLK1(1)          <---------YAB1                           --------->WOX13(1)   acaaaactcaatgatgattcccaagaattccggcaacggcgccaagtttgatataattcaaattacatagaactactctctcaaataagacatcaattac  4179900         <------ZmHOX2a(2)       <------ZmHOX2a(1)     <---------TOE2(3) -------MYB52(1)                                                                                ----- -----ANAC55(2)           <----------DOF2                              <---------GLK1(1)      ------- ---->ANAC55(2)        --------->ARR11(3)                        <---------ZAT2           <----------ID1 -----TOE2(3)          <---------ARR11(3)                        --------->ZAT2      ---------->DOF2 ----At5g28300        --------->GLK1(1)   ----------->GT1   <---------TOE2(3)       --------->AHL20(2)   ggtattttaggatcaaattcacagagttcttttgttcaaacaatgagttaaatgtcgagattaagctagcagggtatcagtgaaaataaaagagaacaaa  4180000                                                                                     ------>ZmHOX2a(2)                                                                                   --------->AGP1                                                                                   <---------AGP1                                                                                   <---------ARR14(2)                                                                          <---------MYB46(3)                                                                      --------->ATHB12                                                                 ===========================HOX2a_HOX2a                                                                 ==========================HOX2a_HOX2a                <---------ANAC58                <------ZmHOX2a(1)<------ZmHOX2a(1) --------->ARR11(3)        --------->At4g35610               --------->ARR11(3)  <---------LBD16      <---------ARR11(3)        <---------At4g35610<---------DOF5.7(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<------ZmHOX2a(2) ---------->DOF2<---------ANAC58      ---------->DOF2    --------->ARR14(2)   --------->MYB52(2)  <-- ------>GT1    --------->ATHB12   <---------AHL20(2)     <---------ARR14(2) <--------P     ---------- --->DOF2    <---------WOX13(1)  --------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <--   gtaaaaagacagcagattgattgtgttgtaaacgatttaataaagagctaggaacagggtattctcaggaaactattggttagtagatctaatgaaagct  4180100                                                            --------->ANAC58                                                            --------->ANAC46                                                       ----------->HVH21                                                   <---------ANAC58                                                   <------MYB46(1)                                                   <------MYB83  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                   <---------ANAC58                                                   <---------ANAC46                                                  --------->MYB55(2)                                                  <---------MYB46(3)                                                 <--------P --------->ANAC58                                            --------->MYB52(1)  --------->HSFB2a(1)                                           <---------ARR14(2)   <---------HSFB2a(1)                                           --------->MYB52(1)   <---------HSFC1(2)                                         <---------KAN4(2)<---------ANAC46                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                     <---------TOE2(3) ----------->TGA1                           ---                                   -------->HAHB4<---------MYB55(1)                             -----      <---------YAB1               <---------ICU4--------->ALFIN1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-------GAMYB                   --------->ICU4<---------MYB52(1)                           -------- --------->MYB111(2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     --------->MYB52(1) <---------MYB46(3)            --------------->AGL15  <-----------HVH21               <---------ICU4 ----MYB46(1)                  <---------------AGL15 --------->ALFIN1    <---------ARR11(3)<---------LBD16 >DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ARR14(2)   --------->HSFC1(2)    --------->YAB1 ----MYB83      --------->TOE2(3) <---------ATHB51<---------DEAR3(1)    <---------CCA1(2)<-----------GT1   aggttgttatcaaaccattcttaaactcaaactctaattatggaataaccggtgggtgtgacgcgaaactccctatatctatagctaataataaccggag  4180200                --------->TOE1(3)                                                  --------->YAB1  --------->LBD16                                                          <-----------GT1 ------>GLK1(2) --------->TOE2(3)                                      <---------YAB1             <xx ----->DOF2   ------->TEIL                                          --------->GLK1(2)           <xxxx ->LBD16      -------->P                                           <---------GLK1(2)   <-----------GT1   aagccgagaaactatcaaccttaatatgcattctcaacgagttcaattgttcatcttagtaaatagaccgattcttattacacacttataaaccagactc  4180300  Previous    Next  AGI:  At2g10650.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 3.5e-43 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 4176233    to: 4179760    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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