Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->KAN4(2)                                     <---------ANAC58      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <---------ANAC58    ---------->DOF2                    --------->YAB1            <---------ANAC46 -------->At4g35610        <---------RAP2.6(3)               <---------ANAC58 ------>DOF2    --------->LBD16       <---------YAB1         <---------ANAC58  --------->LBD16     <- ----->HVH21  <---------LBD16  ------>ZmHOX2a(1)        <------ZmHOX2a(1)<---------ICU4          <---   aaagcggaaagcttattccggagtcttgcagtcctgaattttgataagaatttagccaggaaggcttgcttgtagtcattccaggtataatggagccttg  4131300                                                                                                <----                                                                                              <------ZmHOX2a(1)                                                                                       <---------YAB1                                                                                      <----------DOF2                                                                                     ================HOX2a_HOX2a       <----------DOF2                                                             --------->ARR11(3)       <---------DAG2       ---------->ID1      --------->GLK1(2)   ========================HOX2a_HOX2a -----ZmHOX2a(1)        <----------DOF2         <xxxxxxxxxxxxxxxxsmallRNA(i)       <---------ARR11(3) ------TOE2(3)  <---------ATHB12         ----------->GT1            ------>ZmHOX2a(1)------>ZmHOX2a(2)   aggaagcgactttttccactgatgagctttgtccccaagagaatggaaacaatctgagcttgaagccatcctcactaactccattgatctttattaggat  4131400                                  <------ZmHOX2a(2)                                 --------->ARR11(3)                                 <---------ARR14(2)                                 --------->ARR14(2)                                 <---------ARR11(3)                               ----------->ARR10                              --------->ALFIN1                            <---------ANAC46                          ------>ZmHOX2a(2)        --------->At5g28300                          ==================HOX2a_HOX2a                        --------->ARR14(2)        --------->RAP2.6(2)                    --------->LBD16------>ZmHOX2a(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --        --------->YAB1  <---------ARR14(2)        ----------->GT1     ------->TEIL              ----- -----REM1(1)     <-----------RAV1(2)------>ZmHOX2a(1)       ---------->ID1                   <------   gtagagcctatcaaactcgtccaggggatcgagtggatcctccatagggaggccgtaaaacttgttgccatgaaccatggaattgagacaactcttgatc  4131500                                                                                   <-------TEIL                                                            ------->TEIL        <---------DEAR3(2)                   <---------LBD16                     <----------DOF2          <------MYB46(1)             <---------ZAT18                       <--------P                   <---------MYB46(3)             <---------ZAT14                      <-------GAMYB      <---------ZAT14----------->GT1       <-----------RAV1(1)                       <---------MYB46(3) <---------ATERF1(1)      <---------YAB1    --------->ANAC58        <---------TOE2(3) ======================RAV<---------LBD16   --------->ARR11(3)   --------->ANAC58        <---------YAB1    ----------->RAV1(2)    --------->ICU4 -------->DOF2    --------->MYB52(1)       --------->ATHB12<-----------GT1      <------MYB83 ->ZmHOX2a(2)--------->ZAT14          <---------ZAT14 <---------ANAC58          --------->MYB55(2) ---ARR11(3) --------->ZAT18          --------->ZAT14 <---------ANAC58      <-----------RAV1(1)   tcaaagttattgttgtgcactagcggaagcacaatgccattacactgattgtggttgctttgtacctcgcctgcaccaatgttggttcgtaattctgggt  4131600                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                              --------->ANAC58                                        <---------MYB52(2)                     <---------GLK1(2)                                        <---------MYB46(2)                     <---------ARR14(2)                                        --------->MYB46(3)                     --------->ARR14(2)                <----------DOF2     <---------MYB52(1)                  ---------->DOF2    ------>ZmHOX2a(1)     ------>ZmHOX2a(1)             --------->TOE1(3)               <-------GAMYB--------->GLK1(2) ---    --------->TOE2(3)              --------->TOE2(3)     <---------ETT(2)--------->DAG2    <---------   ------>ZmHOX2a(2)           <---------MYB52(1)       <---------------------WRI1         ========== <---------ARR14(2)        <---------At5g28300--------->ANAC58    <---------ANAC46 <-----------RAV1(1) --------->ARR14(2)       <-----------GT1 --------->MYB52(1) <---------ICU4  ----------->ARR10<------   tctgatcctcagccatagcttttgtgtttaaccgttcccttaactaacgagcaatacggtcgataatttcgttgaaaagcagattctggtgtccttttga  4131700                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               ---------->DOF2                                                                              ------>ZmHOX2a(1)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        <---------AHL20(2)                                                                        --------->AHL20(2)                                                                       <---------ATHB12           xxx             --------->MYB46(3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            *TSS    --------->MYB46(3)                               --------->WOX13(1)         xxxxx      <---------ANAC58                                             ==================HOX2a_HOX2axxxxx --->ZmHOX2a(2)   --------->MYB52(1)                               ------------>CBF<xxxxxxxxxxxxxxxxx -DOF2<---------ANAC58                                             <------ZmHOX2a(2)           <----- ====HOX2a_HOX2a<---------MYB52(2)     <-------TEIL               --------->ARR11(3)     --------->YAB1 ---YAB1  --------->REM1(1)  <----------DOF2       <---------YAB1 <---------ARR11(3)   <xxxxxxxxxxxxx   tcgagtttgcctacaacgactaacaactagactttaacacatacatgagcttgataataggtttttaagatcaattaatcctaaagcactatcatgtcgt  4131800                                                                             <---------ATHB12                --------->WOX13(1)                                          --------->ANAC46     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               --------->YAB1      <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              --------->WOX13(1)  --------->ANAC58 xxxxsmallRNA(fl3)                         --------->YAB1           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxsmallRNA(si3)                        <---------ATHB12        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxsmallRNA(se3)                       --------->ANAC58   --------->ZAT18 --------->AtLEC2 xxxsmallRNA(fl3)                        --------->ANAC58   <---------ZAT14 --------->ANAC58 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->WOX13(1)  --------->ZAT14 --------->ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ANAC58<---------ATHB12  --------->ANAC58            -- xxxxxxsmallRNA(fl3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i) --GAMYB<---------TOE1(3)        <---------YAB1  <-------TEIL  <xxxxxxxxxxxxxxxxsmallRNA(i)        <- xxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->WRKY18(1)         -----   tgtagtactgaaggttgtcaatccaaatgagtgtgatgctagcaatcaagatgcaatcagagttcacagagtcaagccaagcaataacagggtttgagtt  4131900                                                                                --------->MYB46(3)                                                                               -------->P   <-------GAMYB                                                                             <---------MYB111(2)                                                                             <---------MYB46(2)                                                                             --------->MYB46(3)                                                                <---------ALFIN1<---------ATHB12                                                             --------->AtMYB61 ------>MYB46(1) <-----                                                          <xxxxxxxxxxxxxxxxsmallRNA(s)    <---------AtMYB61                                                          xxxxxxxxxxxxxxxx>smallRNA(s)  --------->ALFIN1                                                       --------->ANAC46   <-----------GT1 --------->ALFIN1                                                --------->YAB1----------->RAV1(1)     <---------ANAC58                                               <---------ATHB12------>MYB83  <---------MYB111(1)        ------>ZmHOX2a(1)                      <<<<<<<<<ARR2--------->MYB46(3) ------>MYB83<---------MYB46(3) ------->HSFB2a(2)                           --------->WOX13(1)------>MYB46(1)--------->MYB55(1)----- --------HSFB2a(2)--------->AtLEC2     --------->YAB1  <<<<<<<<<TAC1<---------ZAT2    <---------ANAC58 ---->GLK1(2)<---------ZAT18       ---------->DOF2   xxxxxxxxxxxxxxxx>smallRNA(s)     <---------ANAC46   tctagcagtccttagtgaacatgcagaaaacagaaattcaagcagaacaatcaaaacactcgaccaacacagcttgttaccaaccattcggtgtggttga  4132000                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <---------ZAT14                                --------->ZAT14                                --------->ZAT18                               <xxxxxxxxxxxxxxxxsmallRNA(i)                               xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxx>smallRNA(s)                       --------->CCA1(2)                      --------->ARR14(2)                      --------->ARR11(3)                      <---------GLK1(2)                      <---------ARR14(2)                      <---------ARR11(3)                  ---------->DOF2 --------->ZAT14         --------->GLK1(2)   <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->ARR14(2) <xxxxxxxxxxxxxxxxsmallRNA(s)     --------->ALFIN1 --------->YAB1        <---------ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(i)      <---------AtMYB61<---------ICU4   --------->ANAC58  --------->YAB1                 <---------ZAT2           -------->HAHB4   --------->ANAC58 ----------->ARR10    <-------GAMYB    --------->ALFIN1  <---------YAB1 ------------------TaNAC69(2)xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i)        -------- ------>GT1 ----------->GT1xxxxxxxxxxxxxxxx>smallRNA(s) <---------ANAC46   <---------TOE2(3) --------   gtaacaagcagaaactgtaacaaagatactcgactgcacagtctgttaccagacaactgggtgtggtcgagtatgttaatgataacaggtatgaaatgca  4132100                   <----------ID1                                              --------->ALFIN1    --------->ANAC58                          ---------->DOF2                <------ZmHOX2a(1)    --------->ANAC46                       --------->ANAC58               --------->LBD16    --------->ANAC58                   <---------ZAT6                    --------->LBD16         ---- --->GT1         --------->YAB1   --------->YAB1     <---------ATHB12   <---------HSFB2a(2)    <----- ->AtLEC2  ----------->GT1 --------->ZAT18 --------->ANAC58             --------->HSFB2a(2)  --------   aaaactaagcaacgagtaataagaacaagtgaacaatagtagtgtaagcaaagaaatcaattggatgaaaaattcccgaggatggggtaatcgagtagtt  4132200  Previous    Next  AGI:  At2g10590.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 3.4e-257 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 4128941    to: 4131712    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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