Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <xxxxxxxxxxxxxxxxxxxxxx                                                                              <---------ATHB12                                                                          --------->MYB46(3)                                                                   ==========================HOX2a_HOX2a              <--------HAHB4                                       ------>ZmHOX2a(2)   ----------->GT1                                                <------ZmHOX2a(2) --------ALFIN1                                                  --------->AGP1 ------>ZAT18 --------->ATHB51                       ------>MYB83<---------AGP1 --->ANAC58   <---------ICU4                    ------->GAMYB    --------->ARR11(3)        <---------ARR14(2) --->ANAC58  --------->ICU4                    <---------MYB111(2)===========================HOX2a_HOX2a -->SPL7   --------------->AGL15               --------->MYB46(3)<---------ARR11(3)    xxxxxxxxxxxxxx --ALFIN1  <---------------AGL15          --------->YAB1<----------DOF2  -------->P   --------->LBD16 -SPL7 --------->KAN4(2)        <---------TOE2(3)    ------>MYB46(1)  <---------MYB52(2)   --------->ARR14(2) >ATERF1(1)--------->TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ARR14(2)   ------>ZmHOX2a(1)   cccactggttattccataattagagtttgagtttaagaatggtttgataacaacctagctttcattagatctactaaccaatagtttcctgagaataccc  3952700              --------->AHL20(2)        --------->At4g35610         <----------DOF2           --------->WOX13(1)                                          <-----      <---------ARR11(3)       --------->WOX13(1)                                        --------->TOE2(3)   ------>ZmHOX2a(1) --------->DOF5.7(2)<---------At4g35610                         --------->ZAT2 xsmallRNA(se3)<---------AHL20(2)<---------ATHB12               <-----------GT1     <---------ZAT2 xxxxxxxxx>smallRNA(fl3)     ------->GAMYB      --------->TOE2(3)           --------->YAB1     ------   tgttcctagctctttattaaatcgtttacaacccaatcaatctgctgttttcttaatttcattttcttactatttcactcataccctgctagcttaatct  3952800                                         <------ZmHOX2a(2)                                <---------MYB52(1)                               --------->LBD16                              <---------ANAC46                          <---------GLK1(1)                 <---------ARR11(3)                          --------->GLK1(1) =========================HOX2a_HOX2a     <-----------GT1     --------->ARR11(3) ------>ZmHOX2a(1) ------>ZmHOX2a(2)             --------- ----ICU4                <---------ARR11(3)--------->TOE2(3)--------->ARR11(3)      <---------HSFB2a(2) --->YAB1         ---------->DOF2  <---------ARR14(2) <---------YAB1                >>>>>>>ZML2<-----   tgacatttaactcactgtttgaaagaagaactccgtgaattcgatcctaaaatactacaattgatctcttatttgagagagtagttctaggtaatttgaa  3952900                       <------NtERF2                      --------->LBD16                     <---------ANAC46                     <---------LBD16                    <---------LBD16                    <---------ANAC46                 --------->ATERF1(1)                 <---------MYB52(1)                <-------GAMYB                <---------At4g35610               <---------ANAC46               <---------ANAC58               <---------ANAC58               <---------bZIP60(2)      --------->ATHB12             ------>NtERF2              <---------ICU4             <xxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------ZAT14            ----------->TGA1           --------->ICU4          <------MYB46(1)              <---------YAB1       <----------DOF2          <------MYB83------>NtERF2  <---------ICU4      <<<<<<<<CAMTA3                    xxxxxxxxxx          <---------ANAC58           --------->YAB1    --------->ANAC55(2)              --------->At4g35610         <-----------RAV1(1)        --------->ICU4     --------->ANAC58                 <---------At4g35610 ------>AtSPL8<------NtERF2      <------ZmHOX2a(1)     --------->ANAC58               <-----------RAV1(2) ------GT1<---------ANAC58     <---------TOE1(2)--------->ZAT14           <----------DOF2 --------->ALFIN1   ccatatcaaatttggtgccgttgccggggttcttaggaatcatcattgagtttactcacgcgttttttgttttcttcttttctgtgtttcaggtgtatgc  3953000                                                                             ------->GAMYB                                                                           ------>MYB83                                                                           ------>MYB46(1)                                                                          --------->MYB52(1)                                                                          ----------->RAV1(1)                                                                         --------->AtMYB61                                                                         --------->MYB46(3)                  --------->MYB52(1)                                    --------->MYB46(3)             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        ------->TEIL            --------->At4g35610                     *TSS             --------->ZAT18                <    --------->ANAC58                            --------->HSFB2a(2) --------->ANAC58                -    --------->ANAC58      <------ZmHOX2a(1)     <---------HSFB2a(2) --------->ANAC58               -- xxxxxxxxxxxxx>smallRNA(se3)                <---------ZAT14         --------->ANAC46               <-   ctaggcaaacaaggagcacaaaacagaaggagcttatcaacttgtctgttctggacttagaaaaacttgaacgcaccaacagaaaaactcagaaattagc  3953100                                                                                    <---------ATERF1(1)                                                                             <-----------RAV1(2)                                                                            <------ZmHOX2a(2)                                                                           --------->ARR14(2)--------                                                                --------->ANAC46    ------>NtERF2                                                                --------->ANAC58   --------->ANAC58                                                                --------->ANAC58   --------->ANAC58                                                                --------->RAP2.6(2)<------NtERF2                                                               --------->SPL7xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        ----------->RAV1(2)<---------ARR14(2)--------                                                       ------>MYB46(1)<---------ATHB12   ---------->DOF2              --------->At4g35610                      -------->P------>NtERF2    ------>NtERF2   ----------->HVH21                                   --------->MYB52(1) <------ZmHOX2a(1)  --------   --------->ETT(2)                                    ------>MYB83  xxxxxxxxxxxxxxxx>smallRNA(s)  <---------WOX13(1)                                  =============================HOX2a_HOX2a ---------MYB46(3)      <-----------HVH21 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------ANAC58 -------->ATHB12       <------MYB46(1)  <---------YAB1------>ZmHOX2a(1)--------->YAB1<------NtERF2 ------->ICU4 <---------At4g35610      <---------ARR11(3)     =====================HOX2a_HOX2a------- --------ATHB12        <------MYB83    --------->ARR11(3)     <------ZmHOX2a(1)  <---------ANAC58   aatggttgacagagtcatcagaggctggtcagagattggatgatcatggactcatcctacctgaggacgccaatgaggatcaggcgcgcctcaatgcgca  3953200                                          <---------ZAT2                                  ----------->HVH21                                  --------->At1g77200                                  ------->GAMYB                                  --------->DREB2C(2)                         <------MYB46(1)  -------->P                         <------MYB83     ------>MYB46(1)                <---------ZAT2 xxxxxxxxxxxxxxxx>smallRNA(s)                --------->At4g35610       --------->ZAT2                <---------At4g35610      --------->MYB55(1)                       <-------TEIL   ----                ----------->RAV1(2)     --------->AtMYB61                        --------->CCA1(2)                --------->ZAT2--------->ETT(2)                                  <---------ARR14(2)               ------->TEIL   --------->WRKY38(1)<-------GAMYB                  --------->ARR14(2)      xxxxxxxxxxxxxxxx>smallRNA(s)--------->DEAR4(1)                      <---------ZAT14        ---- <---------At4g35610  <---------ANAC58  --------->MYB46(3) ------>NtERF2 <---------ALFIN1        ---- --------->At4g35610  <---------ANAC58------>NtERF2       --------->ANAC46--------->ZAT14       ----- ->ANAC58     <-----------RAV1(2)--------->DEAR3(2)    ------>ZmHOX2a(2)--------->At4g35610   <------ ->ANAC46   --------->ANAC46  <---------ETT(2)<---------ANAC46       <---------At4g35610    <------NtERF2 ->ANAC58   --------->ANAC58 <------NtERF2------>MYB83<---------WOX13(1)<---------At4g35610<--------- -->LBD16   --------->ANAC58 --------->ATERF1(1)--------->ALFIN1     --------->At4g35610<xxxxxxxxxxxx   attagctgctagagacgcagctgggcttggtgtcgaccgacaccaactgggtgttgatcgacaccatcgagagcagcacacagatacaatcggtgtcgaa  3953300                                                                  <---------TGA1a                                                                  --------->ANAC46                                                                  ================================MYC_MYB                                                                  --------->TGA1a                                                                  --------->O2                                                                  --------->bZIP60(2)                                                                  <---------O2                                                                <---------ALFIN1                                 <---------GLK1(2)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 --------->ARR14(2)   <---------At4g35610                          ------>MYB46(1)             ----------->RAV1(2)                          ==================================================MYC_MYB                          -------->P                  --------->ZAT2  <---------SPL7                         ----------->RAV1(1)          <---------ZAT2 --------->TOE1(1)                        --------->AtMYB61 <---------At4g35610  --------->MYB46(3)      ------->GAMYB   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ARR14(2)   ----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ARR14(2)   --------->MYB52(1) ------>NtERF2      xxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----->ANAC58        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(i)         ---- ----->ANAC58      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->LBD16                      <---- ----->ANAC46     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------LBD16                   --------->ANAC58 ---->SPL7    --------->ETT(2)   <---------ARR14(2)   --------->At4g35610                  --------->ANAC46 ---SPL7     <------NtERF2------>MYB83------>ZmHOX2a(1)  --------->At4g35610               --------->ANAC58 --HVH21   --------->ALFIN1<---------ALFIN1       ------>ZmHOX2a(1)  --------->TOE2(1)    ------->GAMYB xxxxsmallRNA(s)  <---------ETT(2)--------->GLK1(2) <-----------RAV1(2)            --------->GLK1(1)   cgacacaacagaggtgtcgatcgacaccaacaccagattcctgcagctattcctccagctgcggaaccacgtcgtactcttggggatttcaacaggccag  3953400                                                                                          <------NtERF2                                                                                          --------->ZAT2                                   --------->AtMYB61                                      <---------At4g35610                                   <---------ALFIN1                                       <---------ZAT2                                <---------ALFIN1                                          --------->At4g35610                               --------->MYB46(3)                                        --------->ANAC58                              --------->ANAC46                                <----------DOF2     >>>>>>>ZML2           ------->TEIL  ---------->DOF2                     <---------ANAC58       < ----->ARR14(2) <------ZmHOX2a(2)------>NtERF2                               <---------ANAC58   ----- -----ALFIN1   <-----------HVH21--------->ANAC46--------->MYB46(3)       <----------DOF2 --------->ANAC58   acctgttctagctaatcgatcagcgattgtacccccaccattccaaaggaacaactatgtgcttaagcctgcctactttgctttagttagccagcatcct  3953500                                                                                               ------                                                                                               ------                    >>>>>>>>>>>>>>>>>LFY           ------>ZmHOX2a(2)                          <xxxxxx                    <<<<<<<<<<<<<<<<<LFY          <------ZmHOX2a(2)                          <-------                   --------->RAP2.3(3)           <---------AGP1                              <-------                 --------->At4g35610             --------->ARR14(2)                          <-------       <---------CCA1(2)      --------->YAB1     <---------ARR11(3)                    <------ZmHOX2a(1)     <---------ANAC46        <------ZmHOX2a(2)   <-----------ARR10                  --------->At4g35610     <---------ANAC58    <---------ATHB12        <---------ARR14(2)                 <---------At4g35610     <---------ANAC58  --------->MYB52(1)        --------->ARR14(3)               <-----------RAV1(2) ---------AtLEC2 <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------ARR14(3)       <xxxxxxxxxxxxxxxxsmallRNA(s) ->ZmHOX2a(1)    <---------At4g35610             --------->ARR11(3)     --------->MYB52(1) <xxxxxxxxx   ttccatggcttatctcatgagcagccaatggatcatatcgagcgatttgaagatcttgttttgagcatcaaggctaatggagtctcagaggactacctac  3953600  Previous    Next  AGI:  At2g10280.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 5.3e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 3953052    to: 3960282    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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