Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         <---------At4g35610        <---------At4g35610                                                    <---------At4g35610        --------->At4g35610   --------->WOX13(1)                          <----------DOF2 ----REM1(1)         <---------ANAC58          <---------YAB1         <----------DOF2 ------AGL15         <---------ANAC58          --------->ICU4      <-----------GT1              ----- ----->AGL15   --------->ARR11(3)         --------->ANAC58     --------->ARR14(2)         ----------- ------>AGL2 <---------YAB1 <---------YAB1--------->ANAC58     <---------ARR14(2)------->GAMYB ------   tagaaagtttagctgatgattttgcttctgatcattcaaatagaacgacattattcacttagccgtatattactttctttcatccgactattttgtaaaa  3934700                                          --------->ZAT2                                          <---------ZAT2                                         --------->ANAC58                                         --------->ANAC58                                     --------->ANAC46                                     --------->ANAC58                                     --------->ANAC58                                    <---------LBD16                                ----------->HVH21                                      --------->ZAT14                                --------->WRKY38(1)                                    <---------ZAT14                                --------->WRKY12                                  ---------->DOF2      <---------AHL20(2)       --------->DOF5.7(2)                             <-------TEIL     <---------AHL20(2)       <-------GAMYB<---------LBD16                 <---------TOE1(3)  --------->ATHB12           <---------ANAC58                              <---------------AtSPL8 <---------YAB1  --------->ANAC46<---------DOF5.7(2)                       <---------TOE2(3) -------- ---->DAG2     <---------At5g28300 <---------ANAC46                   <---------AHL20(2)   <--------- >GT1--------->AHL20(2)      <---------ANAC58     ----------->GT1    --------->ICU4    --------->ZAT18 ---->DOF2    <-----------GT1<---------ANAC46--------->LBD16         --------->AHL20(2)<---------ZAT18   agtatgatttattttgttaccgcaacgagttgcgttgacgcgcaagccgggtttgaaaaaaacattgtatatttattaaggtacaaaagcgcactttgta  3934800                                                                       <------MYB46(1)                                                                       <------MYB83   --------->CCA1(2)                                                                       --------->ANAC55(2)         --                                                                       <---------ANAC55(2)     <-----                                                                      <---------TOE2(3)        ------                                                                 <---------AHL20(2)  --------->ARR14(2)                                                                 --------->AHL20(2)  <---------ARR14(2)                                                              <----------DOF2        <---------ARR11(3)                                                             <---------ANAC58        <---------GLK1(2)                                                             <---------ANAC46      ----------->ARR10                                                         <---------ANAC58          <---------TOE2(3)                                                     <---------ANAC58 --------->MYB46(2)      -------       <---------At4g35610                           <---------ANAC58 --------->MYB59--------->ARR11(3)       --------->At4g35610             <---------WRKY12  <---------ANAC46 --------->MYB52(1)  ------- --->GT1                              --------->WRKY18(1)<---------ANAC58 <---------DOF5.7(2) ------- -DOF2 <-------GAMYB    <-----------GT1<---------WRKY38(1)   <---------ANAC58      <---------YAB1 xxx   aattgtttcagttgaaaaatgccatttctccatttttgtggtcaatgtgttcaatgcttgcttgcttttaattaggtaacgaattaagatttgccattga  3934900                                                                                          -----------                                                             --------->ANAC46            <---------ALFIN1    --------->ZAT6                                      --------->ARR14(2)               --------->ANAC58 <--------P                                          <---------------AGL15               --------->ANAC46 --------->GT1                                       --------------->AGL15          --------->ANAC58 ----WRKY18(1)                                       <---------ANAC46               --------->ANAC58 --->ATHB12              --------->TOE2(3)         <---------At5g28300     --------->ANAC46      ---- -->WRKY12          --------->YAB1                <-----------GT1      <---------YAB1  ----------->RAV1(1) -->WRKY38(1)   --------->MYB46(3)              <----------DOF2       --------->AHL20(2) --------->ANAC58 ---->HVH21--------->ANAC46                     <---------DAG2       --------->YAB1 --------->ANAC46 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------TOE2(3)<---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ctggtaactctacaaacaacaactataacttaatacaaactaaggcttaactttaccgtatataggcaaaattataatcgcaacttaagccacacaattt  3935000                                                                                                 <---                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                      <----------DOF2                                                                                    <------NtERF2----                                                                                    --------->At4g35610                                                                                   <---------DEAR3(2)            <----------DOF2                                                       --------->ETT(1) <-    <---------YAB1                                                                <---------DEAR3(1)   <----------DOF2                                             ------->TEIL       <---------RAP2.6(2)  --------->YAB1                                               *TSS              ---------->ID1<-----  <---------ICU4                                       --------->YAB1            --------->RAP2.6(3) <---------ATHB12            ---------->DOF2      <---------ZAT14            <----------DOF2  ------- ->CBF<------------CBF<----------DOF2             --------->ZAT14    --------->ARR14(2)     <-------- -------->CBF       ------>ZmHOX2a(1)             <---------ZAT18    <---------ARR14(2) --------->ATHB12   ccaatctttattgtctttcatcctcttttttaaaagtcccaaaaactctctgttcactcttaatgaatccatatactaactttgtcggcttcatttgtcg  3935100                                                                                          <XXXXXXXXXX                                                                                         <---------ARR11(1)                                                                                         --------->ARR14(2)                                                                                         <-----------ARR10                                                                                         <---------ARR11(3)                                                                                         <---------ARR14(2)                                                                                         ------->TEIL                                                                                        <---------CCA1(2)                                                                                      <---------ANAC58                                                                                     <-------TEIL                                                                                  <---------TGA1a                                                                                  --------->O2                                                                                  <---------O2                                                                                  --------->bZIP60(1)                                                                                  <---------bZIP60(1)                                                                                  --------->TGA1a       <---------RVE1(1)                                                          ===================       <---------CCA1(1)                                                          <---------ANAC58 ---NtERF2                                                                        <---------ANAC58 -----DEAR3(2)                                                                  <---------TGA2(2) ----DEAR3(1)                                                                  ----------->HVH21 --->ETT(1)                         <---------ATHB12                         <---------At4g35610 --->ID1                 --------->ANAC58                                   <---------ARR14(2) ----->At4g35610         --------->ANAC46                                   ------->TEIL<---------ARR14(1) ---------DOF2           --------->ANAC58                                   --------->GLK1(2)   ----- ----RAP2.6(2)      <---------WRKY38(1)    <---------YAB1                   --------->ARR14(2)  <---- -->RAP2.6(3)      --------->WRKY18(1)   --------->YAB1                ----------->GT1<---------ANAC58 ---RAV1(1)  <-----------GT1<---------GLK1(1)         <-----------GT1--------->ICU4<---------SPL7   gcttcatggatattttagccagtcaacaagaaacccccatcattcatgagagtatttcaccaagtcttggaattagtgaatctgacgtccgtatcttcag  3935200                                                                                                  ---                                                                              --------------->AGL15                                                                              <---------------AGL15                                                                              =======================                                                                             ----------------->AGL1                                                                             <-----------------AGL1                                                                            >>>>>>>>>>>>>>>>>LFY ----                                                                           --------->bZIP60(1)   <---                                                                   --------->ANAC58         ---------                                                     <-----------RAV1(1)   <---------bZIP60(1) ------                                                 <----------DOF2   --------->ANAC58  ----------->GT1                                     --------->ZAT14 <---------ANAC58    --------->YAB1     ---------  ---------->DOF2                    xxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------ICU4     --------- XXXXXXXXXXMIR857                    <---------ZAT14 <---------ANAC58   <---------ATHB12  --------->ICU4 ============bZIP_DOF              >>>>>>>>>TAC1<---------ICU4     --------->ANAC46  <------MYB46(1) ---->At4g35610             ---------->DOF2   --------->GLK1(2)--------->ANAC46      <------MYB83---- -----At4g35610      <-----------HVH21 <---------ANAC46 ----------->GT1 --------->ICU4    <xxxxxxxxxx   catacaaagaacatggaccaagtggtcagtgaaagacagtgttgtgctaatctttgtgtggctaaacacaagcaatgatgccattgttggtaataagcaa  3935300   ------>MYB46(1)   ------>MYB83 ---->GAMYB =======================MADS_MADS ----->MYB46(3) ------MYB52(2)                                                                                   <-- >ANAC46--------------->AGL15                                                                    <--- --->MYB52(1)                                                                                    ---- >ANAC58<---------------AGL15        --------->ARR14(2)                                      -------- >ANAC58<---------DAG2               <---------ARR14(2)                              --------->DAG2 ----->DEAR3(1)         <---------At4g35610             <---------ZAT6   --------->ZAT6 --------->ALFIN1 xxxxxxxxxxsmallRNA(si3)--------->At4g35610   <---------ALFIN1---------->DOF2       ---------->DOF2   cgaccaaatgccttatgaagcattgcagcttattttgcatatagtccctcacttggtagtctgaaaaagagagaaacactataaacaaaagtgggaaaag  3935400                                                                           --------->At4g35610                                                                         ------>ZmHOX2a(2)                                                                       --------->ARR11(3)                                           --------->MYB46(3)        --------->ICU4                            ------>ZmHOX2a(2)                      --------->YAB1 ----ZmHOX2a(2)            <------ZmHOX2a(2)                       <---------ICU4 ------ARR11(3)           --------->ARR14(2)                      --------->ICU4 ----->ARR11(3)           <---------ARR14(2)           ----------->GT1 <---------ARR11(3)       <---- -->DOF2                 <---------PCF2    --------->REM1(1)    --------->YAB1       <xxxxxxxxxxxxxxx   atcaacaagagtgtatgcaagtttgtgggatcccatgagtttgcaacaactcatatgtggaataaatgataatgatctgatgaagtagcccatcaaattt  3935500                                                          <---------WOX13(1)                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->ATHB12                                   --------->ATHB12     <---------ICU4                                    <---------YAB1              --------->At4g35610     --------->YAB1                               <---------TOE1(3) <---------ANAC58    --------->ICU4                                <---------TOE2(3) <---------ANAC46  ---------->DOF2    <---------YAB1   --------->ZAT18       --------->ARR11(3)       <---------ANAC58<---------MYB52(2) -------GT1   --------->YAB1               <---------ARR11(3)    --------->ALFIN1<---------WRKY38(1) xxxxxxxxsmallRNA(si3)                 ---------->DOF2 --------->ICU4            <---------WRKY12   acgagaatgattacaatgagaagttcaccatggagcatgcttaaagatagttaaggcatgattggaagtggtgtgcatcacagtcaactaaagagactgg  3935600  Previous    Next  AGI:  At2g10253.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 3935063    to: 3935896    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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