Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                      <------ZmHOX2a(1)          <----------DOF2   <-     ------>ZmHOX2a(1)                        =================RAV               ==================== -------ALFIN1                           ----------->HVH21                       <---------------AGL15 ------>AtMYB61           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   --------------->AGL15 ----ALFIN1<---------AHL20(2)      <---------ALFIN1<-----------RAV1(2) ------>MYB83 --------->YAB1 -- >AtMYB61 --------->AHL20(2) <-----------HVH21<-----------RAV1(1)      ------>MYB46(1)  --------->ANAC46   ccatctcctcgattaaatctgaaaatatagaggtcatacacctctgaaatgttgcaggagcattgcataaaccaaatgacattcttttataagcaaaagt  3888700                                       --------->At5g28300                                      ----------->GT1                                     <---------YAB1                                     <---------TOE2(3)                                 <---------YAB1     <------ZmHOX2a(1)          <---------ICU4                                        --------->AHL20(2)  <---------ICU4                <--------HAHB4                                  --------->ANAC58 ->DOF2      ---------->DOF2    --------->ATHB12                              ---------->DOF2 --------HSFB2a(2)             <---------------AGL15                        --------->ANAC58   <----- ==============================================MADS_MADS     --------->MYB46(3) --------->ANAC58    - ------->HSFB2a(2)             <---------YAB1         ---------->DOF2       --------->ANAC58   ------   tccataaggacatgtgaaagtagttttctcttgatcattagggtaaattggtatttgaaagaaaccactatttccatcaagaaagcaatattatgggtga  3888800                                                         <-------TEIL                                               <----------DOF2            --------->ANAC58       <---------TOE2(3)<---------HSFC1(1)    --------->ANAC58               ----------->GT1  <---------HSFB2a(2)    --------->ANAC58      --------->ATHB12    ------>ZmHOX2a(2)                                  ---- ----MYB46(3)            <---------ATHB12   <---------ARR11(3)       <----------DOF2            ===== -------->At4g35610    --------->WOX13(1)   --------->ARR11(3)    <-----------GT1               ----- --->ATHB12 --------->ANAC58     ---------->DOF2    --------->HSFB2a(2)                      --------   ttagctaagcattcaagcatttgatcaatgaatggtaaaggaaaatgatcttttctagatgcagcatttaactttctataatcgatacacattctatgac  3888900                                                                     --------->ANAC58         --------->HSFB2a(2)                             <-----------------AG         >>>>>>>ZML2                                     ----------------->AGL3         <---------HSFB2a(2)    <---------YAB1        <---------ALFIN1 --------->YAB1            <---------ICU4      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                -- ----------->AGL15        <---------YAB1      ------->GAMYB<----------DOF2    <---------LBD16      xx ==========================================================================MADS_MADS   --------->ANAC58 ------------>AGL3      --------->YAB1    --------->MYB46(3)         --------->ANAC58  --------->ANAC58 --->HVH21        <------ZmHOX2a(2)     <-----------GT1  <-----------------AGL3      --------->GLK1(1)   cagttatagttctagtagggatcaattcatcattttcatttttaacaacagtcattccaccctttttagggacgcaatgctctggagaaacccaagtact  3889000                            --------->ANAC58                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 <---------bZIP60(1)            --------->At4g35610            <---------At4g35610            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <--------P        --------->ANAC58          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->CCA1(2)     --------->WOX13(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <----------DOF2          <-----------RAV1(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <-----------GT1                 ------>ZmHOX2a(1) xxxxxxxxxxxxxxxx>smallRNA(i)                     --------->ZAT6                 *TSS  <---------MYB46(3) ------->YAB1 ----------->HVH21               ------>ZmHOX2a(1)            <-----------GT1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <----------DOF2             <-----------GT1 -----------   atcagagatagggtagatgacaccagcatcaagcagtttcaaaatgtccttttcactacttctttcaagtttggatttaacctcctctgtggttcaatgc  3889100                              <---------MYB46(3)                             <---------YAB1                           ------>ZmHOX2a(1)                     <---------MYB46(3)                                          <---------ATHB12                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        ------>MYB83        <-------TEIL--------->ALFIN1                                         ------------>CBF      <---------GLK1(2)--------->ARR14(2)                                    --------->MYB46(3)      <---------ARR14(2) ------>ZmHOX2a(2)                            <---------YAB1     <------ZmHOX2a(1) <---------ARR14(2)                             --------->ICU4     ===========================HOX2a_HOX2a                      <---------At4g35610     ==========================HOX2a_HOX2a             --------->TOE2(3)   <-----------GT1------>ZmHOX2a(1) ->CBF--------->ARR14(2)<------ZmHOX2a(2)   ----------->GT1  <-----------HVH21  ------>MYB46(1)   tagagtaggattcgttttcaaggtggatcctatggttgcataaactaggtgaaattcccttaatgtcagataatgaataaccaatcgctctcctatactt  3889200                                                                                                   <-                                                                                           --------->TOE2(3)                    <-------TEIL                                                           --------->TOE1(3)                   --------->DOF5.7(2)             -------->HAHB4                        --------->SPL7                  <-------PIF5                     <---------ICU4                        ------->TEIL                  <-------MYC3                     --------->YAB1                       <---------CCA1(2)                  <-------MYC2                    --------->ICU4                      --------->ANAC55(2)                  ------->MYC2                   <---------TOE2(3)                    <---------ANAC58                  ------->PIF5       <-----------GT1       ----------->GT1            <---------ANAC55(2)                  <-------MYC4  <---------ICU4  --------->YAB1                        <---------ANAC58                  ------->MYC3 <---------YAB1  --------->ICU4                  xxxxxxxxxxxxxxxx>smallRNA(s)                <---------TOE1(2)  XXXXXXXXXXXXXXXXXXXX>MIR397A                --------->ANAC58 -----       <---------At4g35610   --------->YAB1  --------->TOE2(3)      <---------ZAT6   --------------->AtSPL8       --------->At4g35610   <---------ICU4  <----------DOF2 <--------P        --------->ANAC58 <----   tctaagttcagctaatagcacgttcacttcatcatcatttaactcagcattaatgatcacaaggtaagtagagtttggaccaaggaatgcgtaccttaga  3889300                                <---------ANAC58                                <---------ANAC46                              ------>NtERF2                           <---------ANAC58                          <---------AtMYB61                          <-----------RAV1(1)                        <----------DOF2                     -------->P <---------ANAC58                  <------ZmHOX2a(2)                    <---------TOE2(3)     --------->LBD16         <---------MYB46(3)<---------ANAC58           ---------->DOF2 --------->At4g35610    =====================HOX2a_HOX2a               <---------At4g35610<---------At4g35610    <------ZmHOX2a(1)------->TEIL                  --------->At4g35610--------->ZAT2 ---------DOF2   --------->ARR11(3)           --------->ANAC46   --------->YAB1 ---->ARR11(3)   <---------ARR11(3)           --------->ANAC58  --------->ICU4 -----ARR11(3)  xxxxxxxxxxxxxxxx>smallRNA(i)  --------->ANAC58 <---------KAN4(2)  <---------MYB46(3)   cctttaggaagtggtttgagatcaacctttggtgccttgagttcaaacaagtcatctaaagttggaatgatcagctctccagagtcgttggcagtcgagg  3889400                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                 <---------ANAC58                                                                                 <---------ANAC58                              <-----------RAV1(2)            <---------ICU4  <-------GAMYB                             <---------ZAT14    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            --------->ALFIN1   <---------WRKY18(1)          <-----------RAV1(1)   ---                           --------->ZAT18    --------->WRKY45          xxxxxxxxxxxxxxxx>smallRNA(s)                           <---------ZAT14    --------->WRKY12      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ATHB12       --------->ALFIN1    --------->WRKY38(1) <---------YAB1 <---------ANAC46----   tcgagtcattggtcgagtatgctctcgagtgtgcaggttgaactcgtgttgacccttcttcgctcattaccattacctctgttgctggtccattcaattc  3889500                                                               <---------------AGL15                                                               --------------->AGL15                                                              ----------------->AGL1                                                              <-----------------AGL3                                                              ----------------->AG                                                              <-----------------AGL2           <---------GLK1(2)                     <---------GLK1(1)         <---------YAB1                          --------->GLK1(1)      --------->GLK1(2)                       <---------HSFB2a(2)   --------->DAG2                             --------->HSFB2a(2) ---------->DOF2                           --------->GLK1(2)  ----------------->AGL3             ---- xxxxx>smallRNA(fl3)                 --------->MYB52(1)  <---------ATHB12                <----------DOF2 xx>smallRNA(se3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <---------DAG2 --->ZmHOX2a(1)         <----------DOF2    <xxxxxxxxxxxxxxxxsmallRNA(i)            <-----------GT1 ----->TOE2(3)          <---------DAG2    <---------GLK1(2)   ----------------->AGL2  <---------ALFIN1   ctcaaaaggttctgattcttccatcgctttatgggagtctaacagcttctggtatcccaatgtttccaaatgtagaaacccatcttcaccactttttgtt  3889600  Previous    Next  AGI:  At2g10190.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 2.9e-120 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family) Range:  from: 3882508    to: 3889081    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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