Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------ARR11(3)                               --------->ARR11(3)                              <---------GLK1(1)                              --------->GLK1(1)                           --------->LBD16                         <---------LBD16                <---------YAB1<---------CCA1(2)              <---------At4g35610      <---------LBD16            <---------ANAC58 <---------ARR14(2)                                                     x  <----------DOF2      <---------ARR14(2)                                                          xx ---------HSFC1(2)     --------->ARR14(2)     <---------ANAC46  <---------HSFB2a(2)              <xxx -------->HSFC1(2)     --------->GLK1(2) --------->LBD16   <-----------RAV1(1)                   <xxx --->ANAC46 <---------ANAC58 --------->ARR14(2)         ------>ZmHOX2a(1)                       <----   gaagctttcattttgcttctgagtgaatccggatatctcattccggagtcttgtagtcctgatgttggagaagaattttgccaagaaggcatttttgcag  3868300             <---------WOX13(1)           --------->ATHB12          --------->ICU4          <---------YAB1        <---------ANAC58        <---------ANAC58         <----------DOF2     <---------ZAT2          <---------ANAC58    <---------TOE1(2)     <--------P   <-----------RAV1(2)  <---------ANAC58          <---------DAG2 xxxxxxxxxxxxxxx>smallRNA(s) <---------ANAC58     <----------DOF2           --------->ANAC58 xxxxxxxxxxxxxx>smallRNA(i)  <---------ANAC46 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <xxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <-----------RAV1(2)                --------->ANAC58<xxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     ----------->RAV1(1)                 --------->TOE1(2)<xxxxxxxx -----RAP2.6(3)         <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(i) ----------->GT1    <-----------GT1   tcatcccaggtcgtgattgaattcttgggtagcgtcttttcccacagatgggctttatctccaagtgagaatggaaacaagcgaagcttgaaaccatctt  3868400                                                                   --------->ATHB12                                                                 ------>ZmHOX2a(1)                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                             <---------GLK1(2)                                                             --------->ARR14(2)                     -                                                            <---------ARR14(1)                -------                                                        --------->MYB52(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      ------>ZmHOX2a(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      ------>NtERF2                   ==================HOX2a_HOX2a------->TEIL------ xxxxxxxxxxxxxxxsmallRNA(si3)                       <---------ARR11(3)     --------->ANAC58  -------- xxxxxxxxxxxxxxxsmallRNA(s2)                        --------->ARR11(3)     --------->ANAC58  <------- xxxxxxxxxxxxxxxsmallRNA(se3)                  --------->ICU4<---------ARR14(2) --------->AtLEC2   --   cactaactccattgaatttagtgaggccatagagcctttcaaactagtcaagatgatctagcggatcctccattggcaggccatgaaacttgttcccctg  3868500                                                                              <-------GAMYB                                                                             <---------MYB46(3)                                                                            <---------AtMYB61                                                                            <---------TOE2(3)       x                                                                          <---------MYB46(3)     ----                                                                        <-------GAMYB           -----                           ---------->DOF2                             --------->MYB55(2)       -----                        ------>ZmHOX2a(2)                              --------->MYB52(2)      <xxxxx                      <---------ARR11(3)                               <---------MYB46(3)     <xxxxxx                      --------->ARR11(3)                              --------->ALFIN1        ------- -------->ATHB12      <---------AGP1                                  <---------AtMYB61     <xxxxxxxx -->ANAC46           <---------CCA1(2)                             <---------DEAR3(1)      <xxxxxxxxx ----->HVH21  ------>ZmHOX2a(2)                                 ----------->HVH21         <xxxxxxxxxx --->RAV1(2) <------ZmHOX2a(2)                                  ----------->TGA1<---------MYB46(3) <x --LBD16 --------->YAB1<------ZmHOX2a(2)        <---------AtMYB61--------->MYB52(1)      --------->ANAC58 ------->MYB46(3)<----------DOF2<---------MYB46(3) --------->ALFIN1<---------DREB2C(2)   --------->ANAC58   aaccattgcaatgagatcgctttagatctcaaagttgttgttttgtattggaggtggaacaattccatgacggtggttgtggttgtgagggaagtcacca  3868600            <------MYB83           --------->MYB59           --------->MYB46(2)           <---------AtMYB61           --------->MYB111(1)          <---------MYB55(1)          <--------P        <------MYB46(1)        <---------MYB46(3)        <------MYB83    <-----------RAV1(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->At4g35610 xxxxxxxxxxxxxxxx>smallRNA(i) ---->ANAC58<---------MYB46(3)                                                 <xxxxxxxxxxxxxxxxsmallRNA(s) ---->ANAC58<------MYB46(1)                                                  --------->ANAC58 xxxxxxxxxxxxxxxxsmallRNA(se3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(si3)                    <---------MYB46(3)       <---------ANAC58 -->At4g35610 <--------P                          <---------DEAR3(2)       <---------ANAC46 xxxxxxxxxxxxsmallRNA(si3)                    <-----------RAV1(1)          <---------ANAC58 xxxxxxxxxxxsmallRNA(le3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC58   <---- xxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <------NtERF2 <---------MYB46(3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<-----------HVH21                  --------->At4g35610       <----   gcaccaatgttggtaggttgctcttgctcatctacaatgtcagccattgtgtcggtttctgtctgttctatcagttggcgagcaatacggtcgatgttat  3868700                                                      <------------CBF                                                   <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                  <------NtERF2                                                 ------>NtERF2                     <---------ANAC58         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <---------ANAC58         <---------ATERF1(1)                 --------->GLK1(1)            <---------RAP2.3(1)                 <---------GLK1(1)           <---------DEAR3(1)           <---------ARR14(2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           --------->GLK1(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         --------->HSFB2a(1)                xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->AHL20(2)         <---------HSFB2a(1)               xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------AHL20(2)         --------->HSFC1(2)                --------->MYB52(1)                <---------ATHB12    ----         <---------HSFC1(2)       <---------------AtSPL3         <------ZmHOX2a(1)           --------       =============================HOX2a_HOX2a --------->DEAR3(1)         --------->WOX13(1)<-------       <------ZmHOX2a(1) <---------YAB1    *TSS--------->RAP2.3(1)       ------------>CBF--------->ZAT6 -----TOE2(3) <---------YAB1      ------->TEIL------->GAMYB    <---------TOE1(2)    ------>ZmHOX2a(1) -----YAB1 --------->ARR14(2)------>ZmHOX2a(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->TOE2(3)<   cgttgaataggaggttctgatttccttgtgatcgtgtatgtatggcaacggcgccaaattgatagtaggattttagtcaattaatcctaaaacactatcc  3868800                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                --------->LBD16                              <---------LBD16                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 <---                            --------->ARR14(2)                                                   <---                            <---------ARR14(2)                                                   ----                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <---                         ------------>CBF                                                       <----                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   <-----                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   <------                      --------->WOX13(1)             --------->ARR11(3)                       <------                    ------------>CBF--------->ALFIN1 <---------ARR11(3)                      --------                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         ---------->DOF2               <------MYB46(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->At4g35610                           -------- xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->AtLEC2  --------->ATHB12                    <------- <-------GAMYB    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->ICU4                       <------MYB83 -->ZmHOX2a(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->CCA1(2)                ---------->DOF2 ->ARR14(2)     <------ZmHOX2a(1)<---------MYB52(1)----------->ARR10              --------->AtLEC2 --ARR14(2)   <---------TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              --------->ANAC46 ---------MYB46(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------YAB1      --------->WOX13(1)<------   tgtcgttgtagtattttaggatgtcaatccaatccggtgtgatgcaaacagatgagatatgattagaaagctctaagtcaatccaagcagaaagttggtt  3868900      ------->GAMYB                                                                                 -   <-----------GT1                                                                                  - ------MYB46(3)                                                                                    -- ---MYB46(1)                                                                                    ----- ------->GT1                                                                                    ----- ---MYB83                                                                                       ----- -----AtMYB61                                                                 ---------->DOF2  <xxxxx ---P--------->ZAT6                                                 --------->At4g35610        xxxxxx ---ANAC58                                                          ----------->GT1          xxxxxxxx ---ANAC58                                                          <------MYB83             <xxxxxxx ->MYB52(2)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ->MYB55(2)                                       --------->ARR14(2)<------MYB46(1)      --------->YAB1 --MYB46(3)           --------->MYB52(1)   ---------->DOF2        <-----------RAV1(2)<---------ARR14(2) -GAMYB    ------>ZmHOX2a(1)          ------->TEIL<---------ARR14(2)<---------At4g35610 --------->ICU4   ggttttaacagtcctagtatgcaataacagaaatgaaatgaaactaaaagcagaaatggcaatagcaggcaggtgaataacaaagcagaaatgataacag  3869000       ----------->GT1  --------->YAB1 <---------ATHB12 -------->ANAC58                                                        <------MYB83 -------->ANAC58                                                        <------MYB46(1) ------->WOX13(1)        <------ZmHOX2a(1)                            <---------MYB55(1) ---->ANAC58           <---------TOE2(3)                              <--------P ---->ANAC58         ------>ZmHOX2a(1)                               <-------GAMYB ---->ANAC46<-----------GT1--------->ALFIN1                         <---------MYB46(3) xxxxxxxxxxxxxxxsmallRNA(si3)                <---------AtMYB61      --------->MYB55(2) xxxxxxxxxxxxxxxx>smallRNA(fl3)             <---------ZAT18        <---------RAP2.6(2) xxxxxxxxxxxxxxx>smallRNA(si3) <-------GAMYB--------->ZAT14        <---------DEAR3(1)       xxxxxxxxx xxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------DEAR3(2)   xxxxxxxxxxxx   gcaatcaaatggataaacgattcctaaggatggggttatcgaatagtgtggtctcattaatctatttaggcggttggcaaaacttcatagaagctatccc  3869100                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 --------->ANAC58                                                 --------->ANAC46                                              ------>ZmHOX2a(1)                                             --------->TOE2(3)                                          --------->ARR14(2)                                         --------->GLK1(1)                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                 --                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                         --                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <xxx                                  ----------->HVH21                                             -----                                 --------->LBD16 --------->ANAC58                         <xxxxxxxxxx                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <xxxxxxxxxx                                --------->ANAC55(2)                                    xxxxxxxxxxxxxx              ----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                ------>ZmHOX2a(2)             --------->MYB46(3) <---------ANAC55(2) ---------->DOF2               xxxxxxxxxxxxxxxx>smallRNA(s)           <-----------GT1     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <----------DOF2<xxxxxxxx xxxxxxx>smallRNA(s) --------->AHL20(2) <xxxxxxxxxxxxxxxxsmallRNA(i)<---------MYB59 xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxx>smallRNA(fl3)<-----------GT1<---------GLK1(1)          --------->TOE2(3)<------ZmHOX2a(2)   tagacaacaagtttaacaacagattaattcactcccgtgatagaaatcctcaagcaaagctagacactgacctaaatccctttagcgatctctaactaag  3869200  Previous    Next  AGI:  At2g10170.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 4.2e-278 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 3865753    to: 3868743    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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