Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                           <-------TEIL                                                        ---------->DOF2                   <---------MYB52(1)          ---------->ID1                            --------->TOE2(3)                  <---------TOE1(3) <----------DOF2                                  --------->GLK1(2)                    <---------TOE2(3) ----ARR11(3)                     ----------->GT1<---------GLK1(2)                    <-----------GT1 --->ARR11(3)       <---------HSFB2a(2)     --------->DAG2                 <---------AHL20(2)    <--- ---CCA1(2)         --------->HSFB2a(2)    ---------->DOF2  --------->ARR11(3)       <-----------GT1   cttctttgttttgtctctgtttctgaaacagagaaatggtttttaaaaagggattcttaaaagaaattggaatacatttttttttttttaacgttcgttt  3788000                                --------->LBD16                                                   <--                                <---------HSFB2a(2)                                              <---                                --------->HSFB2a(2)                                         <--------  <---------ALFIN1         <---------At4g35610          --------->ATHB12                  <---------YAB1 >MYB52(2)            <----------DOF2        --------->ANAC46                       <----------DOF2 --------GT1       <-----------GT1         <-----------GT1                  <---------AHL20(2)   <---   tgccactctctgtcttctaaattactttcatctccgagaaaaatttcacaaaacaaaaccattgcaaaaacagagtattaaaaatgctttttatctttgg  3788100                                             --------->LBD16                                            --------->ANAC55(1)                                            --------->ANAC46                                           <---------LBD16                                          --------->MYB52(1)                             <---------MYB52(1)                         <---------At5g28300--------->ANAC58                     <---------ARR11(1) --------DOF2            <---------DOF5.7(2)--------->ANAC58                     ------->TEIL ------ANAC58           <-----------GT1  <---------ZAT14            --------->AHL20(2)   <---------MYB52(1) --DOF2             --------->DAG2   <---------AHL20(2)        <-------TEIL     <---------GLK1(2) ------ANAC58      ---------->DOF2   <-----------GT1  --------->TOE2(3)         <---------CCA1(2)<---   cttttcttgaaaacaaatagaaaaagttaccgtttctatttacttcacggaaaaaacattagaagttcataaaaattcactcgaatctctcgttacttca  3788200                                                                                         ---------->ID1                                                                                        <---------ANAC58                                                                                        <------MYB46(1)                                                                                        <------MYB83                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                                       <---------AtMYB61                                                                                       --------->MYB46(2)                                                                              --------->ANAC58                                                                              --------->ANAC58             --------->DAG2           <------ZmHOX2a(1)                   <------ZmHOX2a(1)            ---------->DOF2     --------->CCA1(2)                <-----------RAV1(2)   <---------MYB46(3)   ----------->GT1             --------->AHL20(1)               <---------ZAT14        --------->MYB111(1) ----------->GT1        <---------HSFB2a(2)                     --------->ZAT14     --------->ATHB12 ------At4g35610        --------->HSFB2a(2)                     <---------ZAT18    --------->ICU4   gaagagagaaaaaaaaaagtattgttttggaaatatatgaggaagagaaaatgagagaagaagtagtgcaggcgaaggagaagcaatgtttggtgtttta  3788300                                 <------------CBF                         <---------O2                         <---------ANAC58                         <---------TGA1a                         --------->O2                                                    <---------ANAC46                         <---------ANAC58                                  <---------AHL20(2)                         --------->TGA1a                         <------------CBF       --------->LBD16                         <---------bZIP60(2)                    --------->ATHB12        <------NtERF2                         <---------ANAC46    <---------AHL20(2) <---------AHL20(2)      ------>NtERF2                         <---------ANAC55(1) --------->AHL20(2)<---------AHL20(2)      --------->DEAR3(1)                        ----------->STF1 <---------AHL20(2)--------->AHL20(2)          <---------ANAC46                      ----------->HVH21 <---------AHL20(2) <---------AHL20(1)       --------->ANAC46                      ----------->TGA1  --------->AHL20(2) <---------AHL20(2)  --------->YAB1   taagagagacgatagtagtaactagtgacgtggaatattgattttaattttttagttttattttatttattgaacattttatcaaaacgccgcgtattag  3788400                                                                                         <---------TGA1a                                                                                         ============                                                                     <------MYB83 <---------RAP2.6(2)                                                                     <------MYB46(1)     --------->TGA1a                                                                    --------->MYB59 <------NtERF2  --                                                                  <---------MYB52(1)--------->At4g35610                            ---------->DOF2                      ==================================bZIP_DOF                   <---------ANAC46                              <----------DOF2 --------->At4g35610                   <---------ANAC58                   ------->GAMYB<---------MYB55(1)<-----------RAV1(2)           *TSS  --------->ARR11(3)                   =============================================MYC_MYB <------ZmHOX2a(1) <---------ANAC58                 <---------At4g35610          <---------At4g35610   agaggatgccctagtttaatgtcttggtataaaagcctatattttgcatttttcatccgactctctgcgttaggtttcattttagcggcagacgagagag  3788500                           <------NtERF2                          ------>NtERF2                          ----------->RAV1(1)     --------->ZAT14                    <------NtERF2                         <---------ETT(2)   --------->GLK1(2)                        <---------MYB52(1)                         --------->bZIP60(1)------->TEIL                            <---------RAP2.6(3)                         --------->ETT(2)   <---------ARR14(2)                      <-----------HVH21              --------->TOE2(3)     --------->At4g35610                            --------->ANAC46           --------->GLK1(1)        <---------At4g35610                            --------->RAP2.6(2) --------->ANAC58        <----------ID1    <---------GLK1(2)                   --------->ALFIN1 --------->ANAC58        <---------bZIP60(1)--------->ARR14(2)             <---------ZAT14         <- =========bZIP_DOF  <---------ICU4------->GAMYB   <---------ZAT14          --------->ZAT14         <- -------->DOF2--------->TOE1(3)  --------->MYB46(3)       <---------LBD16  --------->ZAT18         <-   caaaagcaaggagaaaccctaaccatggcgacacaaccagctactgaatctgtgcaatgcttcggaaggaagaagaccgcagtggccgtcactcactgca  3788600                                                                         ------>ZmHOX2a(2)                                                                       --------->ARR11(3)                                                                       --------->ARR14(2)                                                                       <---------ARR11(3)                                                                       <---------ARR14(2)                                                                       <---------ARR14(3)                                                            ====================HOX2a_HOX2a                                                            ===================HOX2a_HOX2a                                                            ------>ZmHOX2a(1)            --------->AHL20(2)                             --------->TOE1(2)                       --            <---------AHL20(2)                            ------>ZmHOX2a(2)                        --        ----------->GT1                                 <---------ARR14(2)                       ----      ------>ZmHOX2a(2)                                 --------->AGP1 --------->ARR14(3)    --------    <---------AGP1                                      --------->ARR14(3)          <-----------ARR10    --------->ARR11(3)                                  <---------GLK1(2)===========================HOX2a_HOX2a    --------->ARR14(2)              <---------ATHB12    --------->ARR14(2)          --------->ARR14(2)    <---------ARR14(2)    <---------MYB46(3)            <---------ARR11(3)         --------->ARR14(2)   <---------CCA1(2)   --------->MYB52(1)              <---------GLK1(1)<------ZmHOX2a(2)    ------>ZmHOX2a(1)  ----------->ARR10    ------------>AtMYB77            --------->GLK1(1)============================HOX2a_HOX2a --------->ALFIN1     <---------WRKY38(1)             ----------->ARR10--------->AGP1        -------- --------ANAC46       <---------WRKY12          --------->ANAC46       <-----------ARR10     <------- --------ANAC58    <---------At4g35610    <---------DAG2--------->ARR11(3)         <---------GLK1(2)< --------ANAC58    --------->At4g35610    <----------DOF2<------ZmHOX2a(2)         <---------ARR14(2)   agcgtggatctggtttaattaagctcaacggttgcccaatcgagcttttccagccagagatcctccgattcaagatcttcgagccgattcttctcctcgg  3788700                                           --------->MYB55(2)                                          --------->ALFIN1                                          <---------DEAR3(1)                                          <---------AtMYB61                                        ------->GAMYB                                     <---------DOF5.7(2)                                     --------->MYB52(1)                                    <---------WRKY38(1)                                    <---------WRKY12                                  --------->REM1(2)                                  <-----------HVH21                                --------->LBD16                               <---------ANAC55(2)                               <---------ANAC58                               <---------ANAC55(1)         <---------TOE2(2)                               <---------ANAC46            <---------TOE1(2)             <---------ZAT2 --------->GLK1(2)          ----------->HVH21      <---------MYB52(1)    --------->ARR14(2)        <-----------HVH21 ------->ANAC58             <---------ARR14(2)       --------->bZIP60(2) ------->ANAC58--------->ALFIN1--------->ANAC55(2)   --------->ANAC46     <-----------HVH21 ------>DOF2 --------->ZAT2<------ZmHOX2a(1) <---------AtMYB61           --------->ANAC46       <---- ->HSFB2a(2)<---------TOE2(2)  <---------ANAC58    <---------ALFIN1  --------->DEAR3(1)   --------->HSFB2a(1) ->LBD16    <---------TOE1(2)<------ZmHOX2a(2)<---------MYB46(3)  --------->ANAC46   --------->HSFB2a(2) --LBD16   <-----------RAV1(2)------>ZmHOX2a(2)<-----------HVH21  --------->ANAC58   <---------HSFB2a(2) ---------ABI4(2)       <---------------ANT<---------MYB46(3)     --------->ANAC58<---------ARR14(2)-   aaagcaccgtttcgcaggtgtgaacatgaggatccgtgtcaacggtggtggtcacacatcacaggtttacgccatccgtcagagtatcgcgaaggctctt  3788800                                                                                            <--------                                                                                            ---------                                                                                           <---------TOE1(1)                                                                                           <---------TOE2(1)                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                                                                         ============                                                                  --------->ATHB12      --------->ARR14(2)         <---------HSFB2a(2)                       <---------ARR11(3)                  <------NtERF2         --------->HSFB2a(2)                       --------->ARR11(3)                  --------->ATERF1(1)       --------->MYB52(1)                         <---------GLK1(1)                   <---------MYB46(3)    --------->SPL7                                --------->CCA1(1)                  <---------ANAC58  --------->ZAT18                                 --------->RVE1(1)                  <---------ANAC46  <---------ZAT18                                 --------->GLK1(1)                  <---------ANAC58 <---------ANAC58                                 <---------RVE1(1)           <---------ANAC58  <---- <---------ANAC58                                 <---------CCA1(1)    <------ZmHOX2a(1)<---------ARR14(2) <---------ANAC55(2)                             --------->ARR11(3)    =========================HOX2a_HOX2a <---------ANAC46                                <---------ARR11(3)    ==========================HOX2a_HOX2a --------->ANAC55(2)                          <---------TOE2(3)   --------->YAB1    <---------LBD16 < -------RAV1(1)                        <------ZmHOX2a(1)         <---------YAB1 <-----------RAV1(1)-- -------------->AtSPL3    --------->At4g35610---------->DOF2 <---------ANAC46 <---------ANAC58 <-----   gttgcgtactaccagaagtatgtggatgagcagtcgaagaaggagattaaagatatcttggtgaggtatgataggactctgcttgtggcggatccgagga  3788900  Previous    Next  AGI:  At2g09990.1    Description:  40S ribosomal protein S16 (RPS16A). Identical to 40S ribosomal protein S16-1 (RPS16A) [Arabidopsis Thaliana] (GB:Q9SK22); similar to 40S ribosomal protein S16 (RPS16C) [Arabidopsis thaliana] (TAIR:AT5G18380.1); similar to 40S ribosomal protein S16 [Euphorbia esula] (GB:AAF34799.1); contains InterPro domain Ribosomal protein S9; (InterPro:IPR000754); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721) Range:  from: 3788411    to: 3789132    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version