Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------ZAT14                                                                 ------>ZmHOX2a(2)                                                                <------ZmHOX2a(2)                                                               <---------ARR14(2)                                                               --------->ARR14(3)                                                               --------->ARR11(3)                                                               <---------ARR11(3)                                                               --------->ARR14(2)                                                               <-----------ARR10                                                               <---------ARR14(3)                                            ===========================HOX2a_HOX2a                                            ============================HOX2a_HOX2a                   --------->YAB1           <------ZmHOX2a(1) <------ZmHOX2a(1)             <---------WOX13(1)   --------->AHL20(2)         <---------HSFC1(2)           --------->ATHB12  <---------ATHB12      <---------TOE2(3)    --------->ZAT14 ->YAB1   <---------YAB1   --------->WOX13(1)      <---------TOE1(3)    <---------REM1(2)      <----- -YAB1    --------->ICU4 <---------ATHB12  ----------->GT1   --------->HSFC1(2)<---------ATERF1(1)   gaaaaacaaaacatgattgaataagaaatcaatgaataaaacaagaggagaataaggtttagaaggatcttctctacagggagtctccatagggttttgc  3664900                                                             ---------->DOF2               --------->ALFIN1                                                          --------->TOE2(3)              --------->ALFIN1                                                          --------->TOE1(3)             ------->MYC3      <-------TEIL      ---------->TaMYB80          --------->TOE1(3)                   ------->MYC2 ---------->DOF2  --------->DAG2                    --------->TOE2(3) <---------AHL20(2)<-------MYC2 ----At4g35610   ---------->DOF2  ---------->DOF2  <---------ICU4     --------->AHL20(2)<-------MYC3   tcccaaagtacagaattgaaaaagggaatagcctcccaaagcttagggtctaaacattaacctcaaagctatataaatatgtcttaagaacgtgttgggc  3665000                                                                                         ============                                                                                         <-----------RAV1(1)                                                                               <-----------RAV1(2)                                                                             <-----------TGA1                                                                             <---------SPL7  <-------                                                                             <-----------HVH21  -----                                                                             <---------RAP2.6(3)-----                                                                             ------>NtERF2<----------                                                                            <---------ATERF1(2) -----                                                                            --------->ATERF1(2)------                                                                  <----------DOF2     <---------AtMYB61                                                              <---------ANAC55(1)--------->ANAC55(2)                                       <---------ARR11(3)     <---------ANAC58 ======================RAV            <------ZmHOX2a(1)          --------->ARR11(3)     <---------ANAC46<------NtERF2<------NtERF2        --------->TOE1(2)              --------->GLK1(2)      --------->ANAC55(2)<---------ANAC55(2)-        --------->TOE2(2)             --------->CCA1(1)       <---------ANAC58<---------MYB52(1)-----   --------->AHL20(2)                 --------->RVE1(1)     xxxxxxxxxxxxxxxx>smallRNA(i) <---------REM1(1) --------->TOE2(3)          <------NtERF2            --------->YAB1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   cttcattaaacataggagaaagttttgggccgaattcaaaaaatcttcaaaacaacaataagttgcgtctttcaattgccgtcaggtattggtgtcgcac  3665100                  ----------->HVH21           <---------ANAC46         <------MYB83 ------>NtERF2         <---------MYB46(3)<---------ANAC46        --------->ALFIN1   <---------ANAC58        <---------AtMYB61  <---------ANAC58     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <-----------RAV1(2)<---------ALFIN1 =============RAV--------->SPL7 --SPL7 <---------DEAR3(1)------>MYB46(1) ------>HVH21  <---------SPL7        <---------ANAC58 ---->ANAC58  <---------ANAC58       <---------ANAC58 -HVH21<---------ABI4(1)--------->TOE1(2)                 <---------At4g35610 ---->ANAC46  <---------ANAC58  <----------DOF2   <---------ANAC58 --->SPL7<------MYB46(1)--------->TOE2(2)         <---------ANAC58 ----->NtERF2 <---------ANAC46<-------TEIL     <---------WOX13(1)          <-----------GT1    <------ ---->ANAC58 <------NtERF2------>MYB83    <---------LBD16 --------->At4g35610  xxxxxxxxxxxxxxxx>smallRNA(i)   gacaccaggggtggtgtcgttcgacacctacgtgcattttcgtctctggattgcttcttcagcttaaattgtatgttttactccagaatgctccataatc  3665200                                                        ------------>CBF                              ---------->DOF2     --------->AHL20(2)            <---------MYB59     -                       <---------ARR11(3)         ----------->TBP xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      ------->TEIL  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <-------TEIL   ---------->DOF2   ----------->GT1   --------->YAB1---------->DOF2            ----- ---ARR11(3)   <xxxxxxxxxxxxxxxxsmallRNA(s)   ----------->GT1--------->YAB1     --------->TOE2(3)  --   ttcaaatgcatctaaaacatgtaaagacctgaaaaagactagaaaaaactgtataaataacaattagactctaaagcctatacctaaaacatacttaaaa  3665300                                                                     ---------->TaMYB80                                                             ------>MYB46(1)                                                             ------>MYB83                                                             -------->P <-----------GT1                                                            --------->MYB52(1)                                                           --------->AtMYB61                                                           <---------MYB111(2)                                                           <---------ALFIN1                     <----                                                           --------->DEAR3(1)                   <----                                                           <---------MYB46(2)              <---------ANAC58                                            --------->AHL20(2) ------->GAMYB               <---------ANAC46                                            <---------AHL20(2)--------->MYB46(3)           <---------ANAC58                             --------->MYB52(1)            --------->MYB46(3)              <---------ANAC55(1)            *TSS            ------>ZmHOX2a(1)              <---------MYB55(2)         <---------ICU4          ----------->GT1 --------->YAB1    <---------ATHB51--------->MYB55(1)        --------->YAB1 -------->At5g28300     ------->TEIL      --------->YAB1   <---------MYB111(1)       <------ZmHOX2a(2) ---->MYB52(1)       <---------ATHB12   >>>>>>>>>>GT-3b<---------At4g35610          --------->ARR11(3) --------->GT1     --------->WOX13(1)<---------TOE2(3) --------->At4g35610      <-----------GT1 -----   acggtaaaaatagggatatatcaatgaatcctaacgattaagaaaaataattcattcagcaccaaccgaggtatatactattttacgatcatgccgtgtg  3665400                                --------->YAB1                          --------->YAB1                        ------>MYB46(1)                        ------>MYB83                       --------->MYB52(1)          <------MYB46(1) --------->TOE2(3)          <------MYB83--------->TOE1(2)                                                     <--------        <--------P    --------->TOE2(2)   --------->MYB52(1)                                --------- -----ZAT18     <-----------------------TaNAC69(2)                                   ---------->DOF2 -----ZAT14   ----------->HVH21 <---------ICU4    <---------AtMYB61              --------->TOE2(3) ---->ZAT18 --------->ALFIN1 --------->YAB1    --------->ALFIN1----------->HVH21----------->GT1<-----   aactaaacatgtaggtgtgacataccaacgataatcatcttgaaaaacggtggaggtctatatagatgacatgctcgtgaaatcgtcaaaagagagcggt  3665500                                          <-----------RAV1(2)                                        <-----------HVH21                                     --------->ANAC58                           --------->AHL20(1)                           <---------ARR11(3)                           --------->ARR11(3)                           <---------AHL20(1) -At4g35610               --------->CCA1(1) --------->At4g35610                        --------->LBD16 >At4g35610               --------->RVE1(1) <---------At4g35610                      <---------LBD16 ------HVH21         <----------DOF2 --------->ANAC58  ------->TEIL     --------->GLK1(2)           <   cacatttaagacttgggagaatgctttaatatcttgaacaagcttcagatgaagttgaatcttgccaagtagacattctgagtcccatccggagagtttc  3665600                                      --------->ANAC58          ----------->RAV1(1)         --------->ANAC46                                  <---------ARR11(3)         <----------ID1               --------->ANAC58   --------->HSFB2a(2)            --------->ARR11(3)    <---------ANAC58               --------->TOE1(2)  <----------DOF2               ---------->DOF2    <---------ANAC58        --------->ANAC58      ------->GAMYB            --------->ANAC58 <---------MYB52(1)   <---------ARR14(2)        <---------TOE2(3)          --------->ANAC46 -------GAMYB---------->DOF2--------->ANAC58   <-----------GT1             --------->ANAC58   tcggttacttagcaacaaagagagaaaccgaagcaaacccaagacagattaacgctcttttcgaacatgctagccccaaggaacatcaaagatgtctaaa  3665700                       <-----------GT1          <------ZmHOX2a(1)         <------MYB46(1)   ----------->GT1                   <----------DOF2         <------MYB83 ---------->DOF2       <---------At4g35610                       ---------->DOF2       <--------P  --------->TOE2(3)        --------->At4g35610                   <----------ID1  <----------DOF2 <---------ANAC46      <-----------HVH21<----------DOF2     ---------->DOF2   gactctttggtaggattactgcgttaaaccggttaacatctcagtcagccgataaatgcctttctttctatcaaatactaaaagggaacaaagagttgag  3665800  Previous    Next  AGI:  At2g09790.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 2.3e-20 P-value blast match to F6H8 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family) Range:  from: 3665312    to: 3666094    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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