Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <---------WOX13(1)                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                                       <---------WOX13(1)                                <---------AHL20(2)                                    <------------CBF                                --------->AHL20(2)                                   --------->ATHB12                               *TSS   <---------ANAC58                          <xxxxxxxxxxxxxxxxxxxx                               <---------AHL20(1)                              ------>NtERF2<--------                               <---------AHL20(2)                            <---------RAP2.6(2) <-------PIF5            --------->ANAC55(2)                                --------->At4g35610 ------->PIF5            <---------ANAC55(2)                                --------->RAP2.6(3)    <- ---------RAV1(2)       <-------TEIL  <---------ANAC58           ------------>CBF   <---------ATHB12 ----->ZAT2            --------->CCA1(2)               --------->TOE2(3)    <---------At4g35610<----- ------ZAT2      <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)---------->DOF2  <xxxxxxxxxxxxxxxxsmallRNA(s) >MYB52(1)  <---------YAB1     --------->AHL20(2)      --------->TOE1(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   gcaggggcaaaaatacgataagtagatacataatttaatttcgagtgtgatcaaaaacctaaaatcagacaattacagagcggccagtgattgagtgata  3399500                                                                                            ---------                                                                                           <---------LBD16                                                                                      <xxxxxxxxxxxxxx                                                                                     <----------DOF2                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                     <---------ARR11(3)     <---------WOX13(1)                                                     --------->ARR11(3)    <xxxxxxxxxxxxxxxxxxxxxxxxx                                                     <---------ARR14(2)   --------->ATHB12 <---------HSFB2a(2)            --------->LBD16                          <---------GLK1(2)  <---------WOX13(1) --------->HSFB2a(2)           --------->HSFB2a(2)                 --------->ANAC58  <---------ALFIN1 <xxxxxxxxxxxxxxxxxx          --------->SPL7            ----------->GT1  <---------ARR14(3)<---------ANAC58   <---------ANAC46          <---------LBD16          <---------------------WRI1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <---------SPL7            --------->ICU4     --------->ARR14(3)<---------ANAC58   <---------LBD16       --------->TGA1a          --------->CCA1(2)  ----------->ARR10   <---------ANAC46  <---------LBD16   <---------HSFB2a(2) <---------WRKY18(1)     --------->ANAC46 <---------ALFIN1 ------->GAMYB   --------->HSFB2a(2)<---------ETT(2)         --------->ANAC58--------->LBD16--------->MYB52(1) xsmallRNA(fl3)       ----------->HVH21    --------->MYB52(1)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -ZAT6 <---------TGA1a--------->ETT(2)   <---------MYB52(2)  <xxxxxxxxxxxxxxxxxxsmallRNA(le3) ------>NtERF2 --------GLK1(1)  <---------HSFB2a(1)    <---------MYB111(1) <xxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxx ----WOX13(1)     --------->HSFB2a(1)    <---------MYB46(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   gatttctcgacgtccggagaacgctcgaccgaagaaatgagtaactaacaaggaagattttgttccccaacttgcttgattaacgggcattttcggggac  3399600   --------->At4g35610   <------NtERF2   <---------At4g35610                                --------->ANAC58 <---------ZAT18                            <---------AHL20(2) --------->ZAT18                           --------->AHL20(2) >LBD16      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ANAC58 xxxxsmallRNA(fl3)                         <---------AHL20(2)    ----------->GT1 xxxxxxxsmallRNA(fl3)                      <---------AHL20(1)   --------->DAG2 xxxxxsmallRNA(fl3)             ------>ZmHOX2a(1)   <------ZmHOX2a(1) xxsmallRNA(fl3)            <---------ARR14(2)    <---------TOE2(3) xxxxxsmallRNA(fl3)        --------->GLK1(1)--------->AHL20(2)---------->DOF2                -------- xxxxxxxxxxxxxxxsmallRNA(i2)--------->ARR14(2)    <---------TOE1(3)      ---------->DOF2     --------   tagcccgcttcccattactccaagagggcaattcctcgcacataataaaattaaggaagccattgaaaggtgactaaaagaccagaaatagggactaccc  3399700                                                                             --------->PCF2                                                                          --------->ANAC58                                                                          --------->ANAC46                                                                          --------->ANAC58                                                                       <---------SPL7                                                   --------->MYB52(1)  <---------ZAT14               --------->ANAC58                 --------->YAB1         --------->ZAT14     -------->HAHB4         ------>NtERF2       <---------ICU4   <---------GLK1(1)     --------->YAB1        --------->LBD16 <---------WOX13(1)   --------->ARR14(2)     --------->ATHB12      ------>NtERF2 --------->ATHB12   <---------LBD16  <---------TCP20    <---------ATHB12      <---------RAP2.6(2)  <---------YAB1   <---------ARR14(2)  --------->AHL20(2)    <---------YAB1       <---------LBD16<---------AHL20(2) <---------ANAC46  ------->TEIL  <------ZmHOX2a(1) ->MYB52(1)    --------->ANAC58     ----------------->AGL3 <---------ANAC58--------->DEAR3(1) >P<---------TOE2(3)  <----------DOF2   --------->AHL20(2) <---------ANAC58----------->HVH21     ----   gagctaatgatagaggcaagaacactttccggccaagtcccattaattgatcataacgatatcgtggaaatgctgcacggacccatatatataggaacag  3399800                                                                      --------->RAP2.6(2)                                                                      ------>NtERF2                                                                     <---------DEAR3(1)                                       ------>ZmHOX2a(2)             <---------RAP2.6(2)                                      --------->HSFB2a(1)       <---------ARR14(2)                                      <---------HSFB2a(1)       --------->ARR14(2)                                      ================================HOX2a_HOX2a                                      <------ZmHOX2a(2)        <------ZmHOX2a(1)                                     <---------ARR14(2)    ------>ZmHOX2a(2)     <---------HSFB2a(2)                                     <---------ARR14(3)    =============================HOX2a_HOX2a                                     --------->ARR11(3)   ==============================HOX2a_HOX2a                                     --------->ARR14(3)   --------->CCA1(2)      --------->HSFB2a(2)                                     --------->ARR14(2)   <------ZmHOX2a(2)      --------->LBD16                                     <---------ARR11(3)  <---------ARR14(3)    ----------->RAV1(2)                                  --------->LBD16        --------->AGP1------>NtERF2                                  <------NtERF2          --------->ARR14(3)  ------->GAMYB                                 <---------LBD16         <---------ARR11(3) --------->MYB46(3)                                 --------->LBD16         <---------ARR14(2)------>MYB46(1)                                <---------LBD16          --------->ARR11(3)------>MYB83         --------->TOE2(3)<------ZmHOX2a(2)              --------->ARR14(2)-------->P            <---       ------->TEIL      --------->ARR14(2)              <---------AGP1<------NtERF2---------->DOF2      <---------ARR14(2) <---------ARR14(2)            ----------->ARR10  <---------ALFIN1      <---- ------>DOF2             --------->AGP1===============================HOX2a_HOX2a------>ZmHOX2a(1)   aaagagaagaaccttgatactaaaccagatcgagcccgggatcttcttgaaaatgggaagatctaggataggcggccaacctcctggaaagaacaatgtg  3399900                                                                                        ----------->HVH21                                                                                      --------->TGA1a                                                                                      <---------TGA1a                              <---------PCF5                                          <---------ANAC58                             --------->WRKY38(1)                                      --------->ANAC55(2)                             <---------ETT(2)                                         <---------ANAC58                             --------->ETT(2)                                         <---------ANAC55(2)                             --------->WRKY12              --------->bZIP60(1)       --------->SPL7                           --------->LBD16                 <---------bZIP60(1)       ------->TEIL                       <---------ARR14(2)             <---------MYB46(3)             <-------TEIL                      --------->ZAT2                 --------->ALFIN1              <---------SPL7                      <---------ZAT2                 <---------DEAR3(1)          <---------------AtSPL3      --------->At4g35610 <---------ANAC46           <---------AtMYB61    ---------->DOF2           <      --------->ZAT2  --------->At4g35610          <------MYB83         <---------HSFB2a(2)         <    <-----------RAV1(2)--------->ARR14(2)          <------MYB46(1)      --------->HSFB2a(2)  <xxxxxxx   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      ----------->HVH21 <---------ALFIN1 --------------->AtSPL3 ------AtLEC2         <---------At4g35610   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-----------GT1     -- ---TEIL *TSS        ------->TEIL     <-----------HVH21 <---------AtMYB61 ======================bZIP_DOF   catggaccaggtgagtagggatgcagctccgtggaccgctcgtcgggcctgataggtggtggtatcacacccttctcaaagaaaccgtacgtgacactct  3400000                       <--------HAHB4                       <---------ICU4                  --------->LBD16                 --------->ANAC58                 --------->ANAC58                <------NtERF2                --------->LBD16             ------>NtERF2             --------->ABI4(1)            --------->DEAR3(1)            <---------ALFIN1           --------->ATERF1(1)           <------NtERF2          <---------RAP2.3(1)          ------>NtERF2--------->YAB1          <---------ATERF1(1)                                                                   <----         --------->ARR14(2)                                                                    <-----         <---------ARR14(2)   <-----------GT1                                                ------->TEIL      --------->ANAC46--------->ICU4                                                        <--------     --------->SPL7   <---------ATHB12                                                   ------------   <---------SPL7--------->LBD16                                                        <----------DOF2 -----------TGA1<---------LBD16                                                    xxxxxxxxxxxxxxxxxx -----------HVH21--------->ANAC46                                           --------->ALFIN1--------- xxxxxxxxxxsmallRNA(fl3)  --------->AHL20(2)                   --------->AtMYB61 -------------------- ------->ANAC46--------->DEAR3(1)                        <-----------GT1   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   cgcgtcatacggctccgccccggaatcattttatacctctcgttttagtcgagtttgtttcacaacctctcccaacaagtggtcgagttcctttgtacct  3400100    <---------WRKY18(1)    >>>>>>>>>>WRKY62             ------>ZmHOX2a(1)    >>>>>>>>>>WRKY18      ----------->RAV1(2)    >>>>>>>>>>WRKY40     ------>MYB83   ----------->HVH21     -------->P   --------->WRKY38(1)   ------>MYB46(1)   --------->WRKY45    --------->AtMYB61   --------->WRKY12    <---------MYB59 <----------DOF2      --------->MYB46(3) ------DOF2           <---------MYB55(2)                    <---------YAB1              <---------TOE1(1) ----DAG2             --------->DEAR3(2)               <---------ANAC58                <-------TEIL ---GT1           --------->TOE1(1)                <-----------RAV1(2)             <---------TOE2(3) --->AtSPL8      --------->HSFB2a(2)             <-----------HVH21         <---------WOX13(1) xx>smallRNA(se3)------>ZmHOX2a(1)             ------>ZmHOX2a(1)         --------->ATHB12        <xxx ->ID1     xxxxxxxxxxxxxxxx>smallRNA(i)  <---------------AGL15       --------->ATHB12<---------SPL7 --->TaNAC69(2)  <---------HSFB2a(2) <----------DOF2   <---------ANAC58<---------WOX13(1)    --------   ttcctttgaccaaggggtcctcgaaccaacctgtccttcctttctattcctagtcaggcgttttcattcattcattgattgattcaaggtacgaagtgac  3400200                                                                                   <---------ATHB12                                                                               --------->LBD16                                                  ----------->HVH21           --------->ANAC46                                                  <------NtERF2               --------->LBD16                                                 --------->LBD16              --------->ANAC58                                                 <---------HSFB2a(2)          --------->ANAC58                                                 <------NtERF2               <------NtERF2                                                <---------ANAC46             <---------LBD16                                                <---------LBD16             ------>NtERF2                                           --------->HSFB2a(2)              <---------ATERF1(1)                                           <---------ANAC58                --------->DEAR3(1)                                           <---------ANAC58                --------->PCF2                                          <---------LBD16                  --------->RAP2.3(3)                                       --------->HSFB2a(1)                 <---------ALFIN1                                       <---------HSFB2a(1)                --------->ATERF1(1)                               <------NtERF2   <---------LBD16           --------->ZAT18                 ---------->DOF2    <---------ZAT18      ------>NtERF2   <---------ATERF1(1)        -    --------->ANAC58          --------->LBD16 ------>NtERF2              <---------ZAT18            <    --------->ANAC58        <---------LBD16<---------HSFB2a(2)         <---------At4g35610         --    --------->ANAC46        <------NtERF2--------->MYB52(1)        <-----------HVH21               -- xxxxxxxxxxxxxsmallRNA(s) <---------DEAR3(1)--------->LBD16       <---------ANAC55(2)              -- --->HVH21    --------->At5g28300   --------->ZAT18     <----------ID1 --------->At4g35610---------->DOF2   aagtccaagcgatagcggtaaaagctagtcgccggaagcgaacttccgggccgggaaggggccaaaaaacgtgagcgcccccgcaatctttctaaagaaa  3400300                                                                                              -------                                         --------->AHL20(2)                                   <------                                         <---------AHL20(2)                                  --------                                     <---------AHL20(2)                                      <-------GAMYB                                     --------->AHL20(2)                                     =========                                   <---------AHL20(2)                                       <--------              <----------DOF2      --------->AHL20(2) <---------ANAC58                <---------ANAC58         <----------DOF2        <---------AHL20(2)    <---------ANAC46            <----------DOF2 -------->STY1(2)              --------->AHL20(2)     <---------ANAC58           <---------DAG2 <---- ---------STY1(2)             <---------YAB1     ---------->DOF2               ------>NtERF2------>ZmHOX2a(2) ------->ANAC46           <---------MYB59<---------YAB1 --------->ALFIN1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->ANAC58           --------->TOE2(3) --------->ICU4             --------->YAB1 <---------ANAC58 ------->ANAC58        <-----------GT1 <---------------AGL15         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   caagctagaaactttactttgagaaataccttattatatatatataattagtaaaggcgtgttagcctatctatagtaaggggccttttcttgatcgtta  3400400  Previous    Next  AGI:  At2g07711.1    Description:  pseudogene, similar to NADH dehydrogenase subunit 5, blastp match of 97% identity and 2.2e-244 P-value to GP|1066145|dbj|BAA07176.1||D37958 NADH dehydrogenase subunit 5 {Malus x domestica} Range:  from: 3397155    to: 3399431    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g07786.1    Description:  pseudogene, similar to NADH dehydrogenase (ubiquinone), blastp match of 91% identity and 9.4e-39 P-value to GP|903844|gb|AAA70292.1||M63034 NADH dehydrogenase (ubiquinone) {Oenothera berteriana} Range:  from: 3399654    to: 3399909    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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