Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      ----------->RAV1(2)                                                                                  <---------DAG2                                                                                  <----------DOF2                                                                                 <------NtERF2                                                                                ------>NtERF2                                                                                <---------ATERF1(1)                                                                               --------->RAP2.6(2)                                                                               --------->RRTF1(3)    --------->ZAT2                                                             --------->DEAR3(1)    ----------->RAV1(2)                                                        --------->RAP2.3(2)    --------->At4g35610                            <---------ANAC46            --------->RAP2.3(3)    <---------ZAT2                           <------------ATHB5               --------->DEAR4(2)    <---------At4g35610                      --------->ATHB12                 --------->RAP2.3(1) <------ZmHOX2a(1)                           -------->HAHB4                   --------->ERF1 ---->ALFIN1                                <---------ATHB12<---------ANAC58  --------->ORA47(2) -->ALFIN1             --------->ARR14(2)   <---------YAB1  <---------ANAC58 <---------ATERF1(1) ->ALFIN1              ------------------>SPL14<---------WOX13(1)           --------->ANAC58 -LBD16           --------->ZAT18           --------->ICU4  <---------ANAC46--------->ANAC46       -- >LBD16           <---------ZAT18<------ZmHOX2a(1)<---------ANAC46          --------->ANAC58     <---   ggaggaagctgggccagtagtcccctatccatacaggagggatgaaatgattgggggggatagcgtagaggcgatagaacgccgccttctggcgaaatac  3269600                      <------ZmHOX2a(2)                      <---------YAB1                            <------ZmHOX2a(2)                     <---------ARR11(3)                     <---------HSFB2a(2)                     --------->ARR11(3)              <------ZmHOX2a(2)                    <---------GLK1(1)               --------->AGP1                    --------->GLK1(1)               --------->ARR11(3)                 --------->LBD16                    <-----------ARR10                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ARR11(3)                <---------ANAC46                    --------->ARR14(2)               --------->At4g35610                  <---------AGP1---------->DOF2     xxxxxxxxxxxxxxx               <---------At4g35610                  <---------ARR14(2)              --------->MYB46(3)   --------->HSFB2a(1)<xxxxxxxxxxxxxxxxxxxsmallRNA(l2)------>ZmHOX2a(2)         --------->MYB46(3) ------->LBD16 <---------LBD16                  <------NtERF2  <---------ARR11(3) --------->MYB52(1) ------LBD16 ---------->CDC5          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ATHB12      ---   cccgaaggctctccctctgcggagatcatagagatggcccgaatagaggccgaagatctattcgagatcaaagcccaaatcatccaacggatggctctat  3269700                        <-------MYC2                        ------->MYC3                        ------->MYC2                        <-------PIF5            <-------GAMYB            <------------CBF       <---------ZAT18            =====================MYC_MYB           <---------MYB46(3)      <---------PCF5        --------->LBD16<---------ANAC58       --------->DEAR3(1)--------->ALFIN1       ------->GAMYB   <---------ANAC46       ==========================MYC_MYB      --------->DEAR3(2)<-------MYC3      <------------AtMYB77  <---------PCF2      ===========================MYC_MYB      --------->MYB46(3)------->PIF5     --------->MYB52(1)<---------ANAC58     ------>MYB83      --------->TGA1a     ------>MYB46(1)   <---------TGA1a     -------->P        -------------->OsCBT     ============================MYC_MYB     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           --------->ICU4    ------>MYB46(1)    <------NtERF2                                                <----------DOF2    --------->MYB52(1) --------->ALFIN1                             --------->HSFB2a(1)    ------>MYB83      ------>NtERF2--------->PCF2            --------->ALFIN1      xxxxxxxxxxxxxxxxxx   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               --------->ZAT6     ------>ZmHOX2a(1)  --------->MYB46(3) <---------ANAC58               <------ZmHOX2a(1)xxxxxxxxxxxxxxxx>smallRNA(i)  <---------MYB59    <---------ANAC58            --------->LBD16    <---------HSFC1(2) xxxxxx>smallRNA(i2) <---------ANAC46           <---------TOE1(1)   <---------HSFB2a(1)  --------->YAB1 -------->HVH21   <---------DEAR3(1)         --------->GLK1(2)      --------->HSFC1(2)  <---------YAB1   atgacccaaccggcgattggatggcgcgtggggctcgggccctcgataatccgaggaccactagtggggaagagtccttggagcgtctttatgatatatg  3269800                                                                                     --------->TCP15(1)                                                                                     <---------PCF2                                                                              --------->ALFIN1                                                                              <---------STY1(1)                                                                             <---------LBD16                                                                          <------NtERF2                                                                          --------->ATERF1(1)                                                                          ------>NtERF2                                                                         ------>NtERF2                                                                         <---------ATERF1(1)                                                                         <---------DEAR4(2)                      <---------ALFIN1                                   --------->RAP2.6(2)                     <------NtERF2                                       <---------RAP2.3(1)                   <---------TCP20                                      <---------RAP2.3(2)                   <---------TCP15(1)                                   <---------RAP2.3(3)                  --------->PCF5                                        <---------RAP2.6(2)                  ------>NtERF2                                         <---------DEAR3(1)                 <---------ATERF1(1)                                   --------->RAP2.6(3)                --------->LBD16                                      --------->DAG2  <---------PCF5         --------->ANAC58                                           ---------->DOF2  <xxxxxxxxxxxxxxx         --------->ANAC46  ----------->HVH21                     --------->ANAC58   ----------->HVH21         --------->ANAC58--------->HSFB2a(2)                     --------->ANAC58   --------->ATERF1(1) <------ZmHOX2a(1)<---------PCF2                              ------>ZmHOX2a(1)  <---------ANAC46  -- xxxx>smallRNA(se3)--------->PCF2                   ---------->DOF2---------->DOF2 --------->ATERF1(1)   gaaggacctccaagaaaccgggcccctctcggacgagttttctcgtttacaagagaaagtattcctcaagaaaggcggccctgggggggaccctatcgca  3269900                                                                    --------->ZAT2                                                                    <------NtERF2                                                                    <---------ZAT2                  -                                                                   --------->ANAC58                --                <---------HSFB2a(2)                                --------->ANAC58              ----            <----------DOF2                                        ------>NtERF2              <------        --------->ANAC58                                          <---------ATERF1(2)       ---------        --------->ANAC58          <----------DOF2                 --------->ATERF1(2)     --------->ZAT18 --------->ARR11(3)           <---------ANAC58            <----------DOF2                --------->ALFIN1 <---------ARR11(3)      <----------DOF2     <-----------GT1   --------->ANAC46      ---------->DOF2< xsmallRNA(i)   --------->HSFB2a(2)   <----------DOF2   ------>NtERF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------->DAG2  <---------LBD16<---------ANAC58          <---------At4g35610 ----------->GT1 <--------   taaggtctgcaagcctttcgggatgggcttttgcttctttctttatttttcgatatgccgcttcttcgccagcaaggagcgagaaaacaaagtgggctgt  3270000         --------->ARR14(2)         --------->GLK1(2)  --------->bZIP60(1)  <---------bZIP60(1)  <---------TGA2(1)  --------->TGA2(1) -------->YAB1 ------->ICU4 ----->YAB1                                                   ------>ZmHOX2a(1)       <---------ANAC58 ----DOF2<---------ARR14(2)                                 ------>ZmHOX2a(2)         <---------ANAC58 >At4g35610                                   <---------MYB52(1)           <----------DOF2 ---------ICU4                               <---------At4g35610           <---------DAG2    <------- -ANAC46<---------GLK1(2)           --------->ATHB12  <----------DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   aatgatgtcagaatttgcaccaatttctatctatttagtgattagtctgctagtttctttgatcctactcggtgttccttttccatttgcttccaatagt  3270100                                                     --------->bZIP60(1)        --------->LBD16                              <---------bZIP60(1)    ------>MYB83                                  --------->ALFIN1    ------>MYB46(1)                             --------->LBD16    -------->P                                <---------LBD16   --------->MYB55(1)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------MYB111(1)                       ------>ZmHOX2a(1)  --------->MYB46(3)         ------->TEIL --------->HSFB2a(1)                                   <----  <---------MYB111(2)  <---------SPL7     <---------HSFC1(2)                                    -----  <---------MYB46(2)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------HSFB2a(2)                     <----  --------->AtMYB61--------->ETT(1)       <---------HSFB2a(1)                     <-----------GT1  <---------MYB55(2) <------NtERF2        --------->HSFC1(2)             <-----------GT1        -----  <---------MYB59  <---------RAP2.6(2)   <------ZmHOX2a(2)             --------->CCA1(2)       ------ --ATHB12         --------->RAP2.6(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------AHL20(2) <-   tctacctacccagaaaaattgtcggcctacgaatgtggtttcgatccttccggtgatgccagaagtcgtttcgatatacgattttatcttgtttcaattt  3270200                          <----------DOF2            --------->ARR14(2)            <---------ARR14(2)          ----------->HVH21        ----------------->AGL1        ----------------->AGL2        <-----------------AGL1                    ------>MYB46(1)                                   < -----AHL20(2)           --------->TOE2(3)  xxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---- ---->AHL20(1)           <---------DAG2   --------------->AtSPL8                      --------->RAP2.6(3) -----AHL20(1)        <-----------GT1     --------------->AtSPL3                     --------->ATHB12 ---->AHL20(2) --------->HSFB2a(2)  <---------ANAC58        <---------WOX13(1)       <---------ICU4 - --->AHL20(2)  <---------HSFB2a(2)  <---------ANAC58       <------------CBF  --------->MYB59<-------- --------YAB1 ------>ZmHOX2a(2) <----------DOF2   ------>MYB83   ------>ZmHOX2a(2)  --------->ICU4 <-   tatttttaatccctgatctggaagtaacctttttctttccttgggcagtacctcccaacaagattgatctgtttggattttggtccatgatggccttttt  3270300                                                         --------->DAG2                                                 ------>ZmHOX2a(2)                                                 <---------LBD16                                           <---------LBD16                <---------GLK1(1)       <---------MYB46(3)          <------------CBF              <---------HSFC1(2)         --------->ATHB12            <---------ANAC58   ---------->DOF2        <---------YAB1               <---------ANAC58   <---------ZAT14       <---------ANAC46 ---------AHL20(2)                --------->DAG2<------ZmHOX2a(2)     --------->ANAC58 -----AHL20(2)  --------->GLK1(1)--------->DAG2<---------ARR14(2)     --------->ANAC58  xxxxxxxxxxxxx -------->AHL20(2)              ---------->DOF2--------->ARR14(2)  <---------ZAT18      ---------->DOF2 --DOF2<---------TOE2(3)    xxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->ZAT18  ---------->DOF2 --------AHL20(2)       <---------YAB1 --------->ALFIN1 --------->ZAT14    --------->ALFIN1  --------   atttattttgacgattggatttctatatgaatggaaaaggggtgcttcggatcgggagtaaagtgatagggcacaaaatggggggaaaaagaaaggaaag  3270400                                                             --------->ZAT14                                                             <---------ZAT14                                                             <---------SPL7                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                        ----------->HVH21                                                       --------->ANAC46                                                       --------->ANAC58                                                       --------->ANAC58                                                    --------->ZAT14                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->SPL7           ------->MYC3                             <---------ZAT14           <-------MYC3--------->ATHB12             ------>NtERF2         <---------TOE1(2)                          <---------SPL7                                  <  <---------ICU4 <---------ATHB12        ----------->GT1--------->DEAR3(1)                       <--- xxxxxxxxx>smallRNA(fl3)        <---------YAB1  --------->ANAC46                        --------->LBD16 -->DOF2<---------ALFIN1    <-----------TGA1  --------->MYB52(1)       <----------DOF2<---------LBD16   agaataatgcccacgtttaatcaattgattcgtcatggtagagaagaaaaacggcgcacggaccgtactcgagctttggataaatgtccccagaaaacag  3270500  Previous    Next  AGI:  At2g07674.1    Description:  similar to hypothetical protein BrnapMp048 [Brassica napus] (GB:YP_717145.1); contains domain PD020792 (PD020792) Range:  from: 3269148    to: 3269903    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g07751.1    Description:  NADH-ubiquinone oxidoreductase chain 3, putative. similar to NADH dehydrogenase subunit 3 [Brassica napus] (GB:CAA45193.1); contains InterPro domain NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; (InterPro:IPR000440) Range:  from: 3270005    to: 3270361    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g07675.1    Description:  ribosomal protein S12 mitochondrial family protein. similar to ribosomal protein S12 [Brassica napus] (GB:BAA02857.1); contains InterPro domain Ribosomal protein S12, bacterial-type; (InterPro:IPR005679); contains InterPro domain Ribosomal protein S12/S23; (InterPro:IPR006032); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 3270407    to: 3270784    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version