Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->ARR11(3)                                    <---------ARR11(3)                                   --------->GLK1(1)                              <---------ANAC58                              <---------ANAC58                              ----------->GT1                                   <-----------GT1                              <---------ANAC46                             <---------YAB1                        <---------AHL20(2)                             --------->YAB1             <--                       <---------AHL20(2)                          <---------AHL20(1)    --------->YAB1                       --------->AHL20(2)            <-----------------AGL1<---------AHL20(2) <------                       --------->YAB1                <-------TEIL  <---------ARR11(3) --------->YAB1       <-----------GT1 <---------AHL20(1)          --------->YAB1  --------->AHL20(1) <---------ICU4   tttctcaatataccatgctattcaataaaattgagtgaaatctttcacaacaatgttcatatttggcaatatatcatattattcaccataatcatattca  3576100                                                                                     <------MYB46(1)                                                                                     <------MYB83                  <---------ALFIN1                                             <---------YAB1                ------>ZmHOX2a(1)                                            --------->YAB1       <---------ICU4                                                        -------->HAHB4       --------->YAB1                                                        <---------ICU4       <--------ATHB1                 <---------At4g35610                   --------->ICU4      --------->ICU4 ------->GAMYB    --------->At4g35610                   <---------YAB1      <---------ATHB51  --------->TOE1(1)                                   <---------ATHB12 -------ICU4 ------>NtERF2 <---------TOE1(2)                      --------->AHL20(2) ----------->GT1 -TEIL<---------ATHB12  --------->TOE2(1)                       --------->AHL20(2)  --------->MYB59   tttttgcaataatgcctcctcaaccctcgtacattttctctgctacctattgttctctaattctgaaaaaatatagaaatgattatttggtaaatgtccc  3576200                                                      <---------AHL20(2)                                                --------->TOE2(3)     <---------ZAT6                  ----------->GT1              --------->YAB1         ----------->GT1                 <---------TOE2(3)             <---------ICU4       <---------At5g28300  --------->YAB1                 <---------TOE1(3)      --------->ANAC58   <-----------GT1    ----------->GT1  <---------HSFB2a(2)                   --------->ANAC58--------->TOE2(3)    --------->DAG2   <------  --------->HSFB2a(2)       <---------YAB1    <---------ATHB12     <-----------GT1    ----------->GT1   tcttctaaaaaatcagtctatggttaatttctgatagaaaacaagtcaaacattattttcttaactattttacagttaaaaggttattcagtaatattac  3576300                     <---------At4g35610   <-----------GT1               --------->MYB59        --------->AHL20(2)                                      <------      <---------AHL20(2)            ----------->GT1                                <---------DAG2     <---------AHL20(2)          ------>ZmHOX2a(1)                       <---------MYB46(3)   <------ -----GT1 <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------YAB1<----------DOF2  <   cctattttttattttcttaggtcatcttctcagtccttaagtaaattactcattttcgcatcaaatcgattttgtttgttctctgctttttggtttaggg  3576400                                           <---------ICU4                                          ------------>CBF                                 --------->LBD16                               --------->HSFB2a(2)                               <---------HSFB2a(2)         ---------->DOF2       --------->LBD16                --------->WOX13(1)    <----------DOF2      <-----------GT1 --------->GLK1(2)    *TSS ---TOE2(3)         --------->TOE2(3)>>>>>>>>>TBF1          <---------ATHB12 ---TOE1(3)----------->GT1    <---------LBD16               ------------>CBF -----------GT1  <-----------GT1--------->LBD16        <------ZmHOX2a(2)------->TEIL   ttttagcttttcaaagttaaaaccttttttccccccgaagaagaatcaatacgaccgatcaaatcaatccattgaatctatggcgatggctatgagactt  3576500                   <---------ANAC46                   <---------ANAC55(2)                   --------->ANAC58       <---------MYB46(3)                   --------->ANAC58       <------MYB83                  <---------LBD16        <---------AtMYB61                ----------->TGA1        <---------MYB52(1)                ----------->HVH21       <---------MYB55(1)               <-----------HVH21        <--------P            <---------At4g35610        <-------GAMYB            --------->At4g35610        <---------MYB52(1)           <---------AGP1           <---------LBD16                                <----------DOF2     --------->ARR11(3)       <-------TEIL<------MYB46(1)                    <---------GLK1(2)     <---------ARR11(3)    <---------HSFC1(2)           <---------ZAT14    <---------TOE2(3)     ----    --------->GLK1(1)      --------->HSFC1(2)           --------->ZAT14    <---------TOE1(3)  <------   ccagcgatatctagagctgtgacggaagtagcttcgtctccggttggtttgagacgactgttctgttcaaatgcttcaaggttctcttttctgtctccac  3576600                    ------>MYB83                    ------>MYB46(1)           --------->MYB46(3)        <-----------RAV1(2)                   <---------MYB52(2)       <---------MYB52(1)                ----------->GT1      <-----------TGA1                   --------->LBD16      <-----------HVH21    ------>MYB83<---------LBD16     <---------At4g35610                <------     --------->ETT(2)      ------>MYB46(1)<---------MYB52(1)       <---------MYB52(1)         <------ ----->DEAR3(1)   --------->TOE1(2)  --------->ANAC46      <---------CCA1(2)     <----------DOF2 ---ALFIN1      ------->TEIL       <---------ALFIN1  <----------DOF2<---------AHL20(2) <---------TOE1(2)   cggctcgtcgtcaggctgaacctagcaccaatctcttccactccggtaacaaacccttttcatctctcagttaatttctggttctttcgagggtttatcg  3576700                                     <---------DAG2                                     <----------DOF2                                 ------>ZmHOX2a(1)                               --------->HSFB2a(1)                               <---------HSFB2a(1)                               --------->HSFC1(2)                               <---------HSFC1(2)                               ------>ZmHOX2a(2)                              <------ZmHOX2a(2)                             <---------ARR14(2)                             <---------ARR11(3)                             <---------GLK1(2)                             --------->ARR11(3)       --------->ARR14(2)    --------->ARR14(2)       <---------ARR14(2)---------->DOF2                          <-------TEIL ---TOE2(3)         <---------------AGL15<---------YAB1 <---------GLK1(2)                       ----- ---YAB1            <----------DOF2 --------->TOE2(3) <---------TOE2(3)                      <-------   ttgttcgagtatatgtttgatgctttttaaagatccttcctttatgaattcagatttagattatcaggttcgtctaagatgaactatatgtgtttaagaa  3576800                                    --------->LBD16            -------->ATHB1         <---------HSFB2a(2)            --------->AHL20(2)     --------->HSFC1(1)           --------->ZAT6            --------->ATHB51       <---------HSFC1(1)      <---------ANAC58           <---------ATHB51        --------->HSFB2a(2)     <---------ANAC58           <---------ATHB12    <---------GLK1(1)  <----------DOF2 ---->GLK1(2)                  --------->GLK1(1)<---------At4g35610--------->HSFB2a(2)           ---- --TOE2(3) --------->ICU4   <---------YAB1      --------->At4g35610<---------HSFB2a(2)  ---------->DOF2   tttgataagttcaattattcatttttggttctgatttccagaaaaatgtctgctttcgattgcttaactctagaaatgtattgtaagagttaaagagagt  3576900                                                                     --------->MYB52(1)                                                              --------->CCA1(2)                                   <-------GAMYB           <---------YAB1                                  ----------->GT1     <---------ANAC58            <---------ANAC58                                  <------MYB46(1)     --------->ANAC55(2)       <---------ARR11(3)      --------->ANAC46            <------MYB83        <---------ANAC55(2)       --------->ARR11(3)      --------->ANAC58           --------->MYB59      <---------ANAC46  --------->LBD16      --------->ANAC58       <---------MYB46(3)       <---------ANAC58<---------LBD16   --------->ZAT14         <---------MYB52(1)         <---------ANAC55(1)  <------ZmHOX2a(2)   <---------ZAT18   --------->ARR14(2)           <---------ANAC58   ------->TEIL <---------ANAC58 ----->GLK1(2)       <---------ARR14(2)           <---------ANAC58 --------->ZAT18<---------ANAC46 <-   ttctttgcactcaattacttcagaattcggtttgttcggttaaaatttggatgcttacgtgatgatatgtgtaccggatcaatgtcttgtttcaagggtc  3577000  Previous    Next  AGI:  At2g07750.1    Description:  DEAD box RNA helicase, putative. Identical to Putative DEAD-box ATP-dependent RNA helicase 33 (RH33) [Arabidopsis Thaliana] (GB:O80792); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G63250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63709.1); similar to Os02g0826100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048584.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro d Range:  from: 3576462    to: 3580522    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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