Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <---------RVE1(1)                               <----------DOF2                              <---------CCA1(1)                              --------->TOE2(3)             <---------MYB52(1)   <---------AHL20(2)                   <---------YAB1            <----------DOF2  --------->AHL20(1)                    <---------ANAC58 -------->LBD16              --------->ARR11(3)   ----------->GT1  <---------ANAC58 ------->DEAR3(1)        ---------->DOF2   --------->ALFIN1       <---------ICU4 ------At5g28300  <---------AHL20(2)   <---------At5g28300       <---------YAB1                     < --GT1     ----------->GT1   <---------ARR11(3)  ----------->GT1 --------->ICU4       --------->ANAC46   accgcgtattatcgcgttattttcttgaaaagatattatatcaccgtgggaaagtttaaaatgagtaatgcttaccattcctttattcacacaaaccctt  3473300                   <---------ANAC58                   <---------ANAC46                   <---------ANAC58               <---------ANAC58               <---------ANAC58             ------>NtERF2                                         <---------ARR14(2)          --------->At4g35610                                      --------->ARR11(3)         -------          <---------At4g35610                                     <---------CCA1(2)       ---------->DOF2          --------->ZAT2                                      <-----------HVH21     <---------ANAC58       --------->RAP2.6(3)                                    --------->TOE2(3)     <---------ANAC58      --------->MYB52(1) <------ZmHOX2a(1)                    --------->TOE1(3)     <---------ANAC46     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   ----------->GT1       --------->ATHB12    xxxxxxxxxxxxxxxx>smallRNA(i)                             <----------ID1  --------->HSFB2a(2)  xxxxxxxxxxxxxxxx>smallRNA(i)                      --------->At4g35610     <---------LBD16--------->DAG2 xxxxxxxxxxxxxxxxsmallRNA(i)                 <----------ID1--------->MYB52(1)<---------HSFB2a(2) ----   cgatgacttatcggctgccttgcttgaggaatagtttcaagaaaatggagacgaagcggaataacgtcaaatcttgtttctggattgagtggaaaaggga  3473400                                           <---------ARR14(2)                                           --------->ARR14(2)       <---------ANAC58                                         ---------->TaMYB80         <---------ANAC58                <                                     <---------MYB46(3)             <---------ANAC46                -                          ------->TEIL----------->GT1            <----------DOF2                    <       <-------TEIL------>ZmHOX2a(1)<---------ANAC46    --------->DAG2                            --- ---->GT1 <---------MYB52(1)     ----------->HVH21     --------->DAG2                           <---- ----->CCA1(2) ---------->ID1   <-----------HVH21     ---------->DOF2          <---------YAB1 -------   tatatgaagttcgttttgttcctctgtgcatctctgtgatgggtaaatccccatgaaaaaggggcaactttcgtgtagtttgtaattgtatataactggt  3473500                                                  ------>ZmHOX2a(1)                                            ------>ZmHOX2a(1)                                     ====================HOX2a_HOX2a          -------->ATHB1                                     ==============HOX2a_HOX2a                --------->ATHB51                                     ------>ZmHOX2a(2)                 <-------GAMYB                                    <---------GLK1(1)                 <---------ANAC46                <---------ARR11(3)  <<<<<<<<<GATA-1                   <---------DEAR3(1)     <---------AHL20(2)             <<<<<<<<<GATA-4                  <------NtERF2 <---------CCA1(1)                  <<<<<<<<<GATA-3                  ------>NtERF2 <---------RVE1(1)                  <------ZmHOX2a(2)               --------->LBD16 ---------ARR11(3)                  <<<<<<<<<GATA-2                <---------RAP2.6(2) -------->ARR11(3)                  ===============HOX2a_HOX2a     <---------RAP2.3(2) ---------AHL20(1)                  =====================HOX2a_HOX2a<---------RAP2.3(1) --------->ZAT14 -------->ARR10 --------->ARR11(3) <---------AGP1--------->TOE2(3) <---------DEAR3(1)   <---------ZAT14 ----P  <---------LBD16            --------->ARR11(3)             <---------LBD16 <-----------HVH21 ---->GT1<---------ANAC46          <---------ARR11(3)    <---------LBD16     <---------YAB1       ---   aagatattttttcggataaatctttctcttcttaatagatctcttcctgttcctcaatcttcggagaatgcggcgttgtattattgtcagttctctgttc  3473600                                                                                              -------                                                                                             <-------                                                                                        <---------ANAC58                                                                                 ====================                                                                                 ----------->RAV1(1)                  <----------ID1                                              --------->RAP2.6(2)          ---------->DOF2                                                   <---------At4g35610        ------>ZmHOX2a(1)        --------->YAB1       <xxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------ANAC58        --------->LBD16          --------->TOE2(3)   --------->ARR11(3)     --------->At4g35610      <---------LBD16          <---------ARR11(3)    <---------ARR11(3)   <-----------GT1   --------- --------->HSFB2a(1)           --------->ARR11(3)   <---------CCA1(2)   <xxxxxxxxxxxxxxxxsmallRNA(le3) ------>LBD16     --------->ANAC46       <----------ID1              <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)   cgaacatttcctgaaagtagacgacaagtttgaaatcttaatggggacaaatctatatctcgttgaatcagttttttaagcagccacattgcgtccctgg  3473700                    -------->P                   ------->GAMYB                  <---------MYB55(2)                  <---------MYB52(2)                  --------->MYB46(3)------>ZmHOX2a(1)                  <---------MYB111(2)                  <---------ALFIN1  =========================HOX2a_HOX2a      ------------>CBF         ==============================HOX2a_HOX2a     --------->ANAC58    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->ANAC58  ----------->RAV1(2) -->LBD16         <---------MYB111(1)                           <---------REM1(2) --LBD16        ===================RAV  <----------DOF2      ------>ZmHOX2a(1) ===RAV   --------->ARR14(2)   ------>ZmHOX2a(1)      ------>ZmHOX2a(2)   <----------DOF2  ---------- -->RAV1(2)     ----------->RAV1(1) <----------DOF2   ==============HOX2a_HOX2a    ---------->DOF2   gactcgaacccaattctgcaacaacccctgttcctgtcctttctttgttttgttgatctattcctcttcacgttgtctttttaaaaaaagactgaaagta  3473800                                                                                                    <                                                                                                    <                         <---------RVE1(1)                                                          <                         <---------CCA1(1)                                              --------->ANAC58                        --------->AHL20(1)                                      ---------->DOF2     <                        <---------ARR11(3)                             --------->LBD16  --------->ANAC58                        <---------AHL20(1)                           <---------LBD16  <---------ATERF1(1)                        --------->ARR11(3)                   --------->DAG2  --------->YAB1<---------ALFIN1   <------------CBF ---------->DOF2 <----------DOF2         ---------->DOF2--------->AHL20(2)      -- >DOF2         <-----------HVH21 <------ZmHOX2a(1) <----------DOF2<----------DOF2--------->DAG2    <-   tgggctattgacaccatggtcagaaagatattttaggacttttctaagtcccgcttctacgataaagtctttccggttttaataaagcgagcgccactct  3473900                          --------->LBD16                          ------>NtERF2                     <---------ZAT2                --------->ARR14(2)                --------->GLK1(2)                <---------ARR14(2)                <-----------ARR10           <---------MYB52(1)          --------->LBD16--------->ANAC58         <---------ANAC55(2)<---------ALFIN1         --------->ANAC55(2)----------->RAV1(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        ------>ZmHOX2a(2)--------->DEAR3(1)        ==============HOX2a_HOX2a       ===============HOX2a_HOX2a       <------ZmHOX2a(2) --------->ANAC46      --------->ARR14(2) --------->ANAC58      <---------ARR14(2)<---------LBD16    --------->ANAC46 --------->ZAT2                               ----------->RAV1(1) <<<<<<<<GATA-1 <---------AGP1                                    --------->RAP2.6(2) <<<<<<<<GATA-4 <---------ARR11(3)                               --------->ZAT18 <<<<<<<<GATA-2 --------->ARR11(3)                            --------->DAG2            <---------AHL20(2) <<<<<<<<GATA-3<------ZmHOX2a(1)                            ---------->DOF2            --------->AHL20(2) ------->ARR14(2) ------>ZmHOX2a(2)                   <---------AHL20(2)    <----------DOF2 --------ARR14(2)<------ZmHOX2a(2)              <----------DOF2  <----------ID1    --------->AHL20(2)   gaatccacgatccgtaaggatctagctccgccacattttgagtagcacttctttattttttgaaaaggccacaaaactcttttcaaaaaataaatctaca  3474000                                                                     ----------->HVH21                                                                   ==================================                                                                   <---------ZAT2                                                                   --------->TGA1a                                                                   <---------TGA1a                                                                   <---------O2                                                                   --------->O2                                      --------->ANAC58          <---------MYB55(2)                                    ---------->DOF2       <-----------GT1                                    =========================================bZIP_DOF                                   <------NtERF2   <---------ZAT14 ----------->RAV1(2)                                 <---------ANAC46  --------->ZAT14 --------->ZAT2             <------              <---------AHL20(2)<---------LBD16 ------>ZmHOX2a(1)<---------ALFIN1            <-------      <---------MYB46(3)  ---------->DOF2     <---------ANAC46------>ZmHOX2a(1)         <xxxxxxxxxxxx     <--------P       ---------->DOF2 --------->ANAC58 <---------GLK1(2)           <---------YAB1   gtttttggtagttcatttttttgtgaaagaaagaggcggaaagctatgtcctgtacagtttctcctcccacctgagggcgaagtcatgactcgaccttta  3474100                               <----------DOF2 ===bZIP_DOF         <---------ANAC58 ---MYB52(1)         <---------ANAC58                    <--------P                        --------->AHL20(2) ---DOF2             <---------ANAC46<-----------GT1  <---------AtMYB61    <----------DOF2 --------->ICU4 xxxxxxxxxxxsmallRNA(le3)    <-------TEIL      ---------->DOF2           <---------At4g35610   <-----   gttttgtgactcgagtacttgttgcgagaggtactttagtaactcgactaaaaggagaggttgtttacatacttgagctttctgcgagagggatttatta  3474200  Previous    Next  AGI:  At2g07734.1    Description:  ribosomal protein S4 (RPS4). similar to ribosomal protein S4 [Brassica napus] (GB:AAC26507.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942) Range:  from: 3472302    to: 3473689    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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