Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           ----------->HVH21                     --------->ANAC46                     --------->ANAC58                     --------->ANAC58                     --------->DEAR3(1)                   <---------ATERF1(1)                  ----------->HVH21                ------>MYB46(1)        <---------HSFC1(1)  <---------At4g35610        <---------HSFB2a(2) ----------->RAV1(2)        --------->HSFC1(1)<---------ALFIN1            <-----------HVH21    <---------MYB52(1)------>NtERF2                   <-------GAMYB  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <---------SPL7 <------NtERF2--------->MYB46(3)                     <---------DEAR3(2) ----->NtERF2 --------->DEAR3(1)                     <---------MYB46(3) ------->DEAR3(1) --------->At1g77200      ------>MYB46(1)                                      <---- ------->ATERF1(2)--------->DEAR3(1)     --------->TOE2(2)                                      ----- --------ATERF1(2)------->GAMYB <---------ALFIN1    <---------DEAR4(1)                        ------- ------>ATERF1(1)--------->DEAR3(2)      <---------MYB59          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>RAP2.3(1)--------->MYB46(3)      --------->TOE1(2) <---------TOE1(2)         <-------MYC3 -------RAP2.6(2)--------->SPL7<---------ZAT14      <---------DREB2C(2)              ------->MYC3 ------ATERF1(1)------>MYB83--------->At4g35610     <---------At1g77200    --------->SPL7    <------- ----MYB52(1)--------->DEAR3(2)--------->ZAT18   <---------ZAT6  xxxxxxxxxxxxxxxx>smallRNA(i)-------- --->ATERF1(1)----------->HVH21--------->ZAT14   <-----------RAV1(1)     <---------SPL7------->TEIL<- -GAMYB --------->HSFB2a(2) --------->ZAT2 ------>MYB83--------->PCF2   <---------ANAC58     -------- ->DEAR3(1)<------ZmHOX2a(1)<-----------------AGL1<-----------HVH21     <---------ANAC58     <-------   gccgccgtttctaggaccgaccgacgcctcacctgcactggtacctacgtagtgtcggtcgcacattcaacatagcgttcggactcatgtgccttccaga  3471500                                                 ---------->DOF2                                                 =====================bZIP_DOF                                              <------NtERF2                                             ------>NtERF2                                             --------->RAP2.6(2)                                             ----------->RAV1(1)                                            --------->ATERF1(2)                                            <---------ATERF1(2)                                            <---------ANAC46                                            <---------DEAR3(1)                                           --------->RAP2.3(1)                                           ------>NtERF2                                           --------->ATERF1(1)                                           <------NtERF2                                          <---------RAP2.3(1)        <---------ALFIN1                                          <---------ATERF1(1)       --------->ANAC46                                          <---------RRTF1(1)       <---------ALFIN1               <--                        --------->SPL7    <---------ERF1          --------->ANAC46              -----                        <---------TOE1(2)<---------DEAR3(1)       <---------ALFIN1              <---- -----ARR14(2)        <---------SPL7     <---------RAP2.6(2)     <---------ALFIN1               ----- ---->ARR14(2)       <---------ANAC46    <---------RRTF1(3)     <---------ATERF1(1)       <---------SPL7 -->LBD16            <---------ANAC58    <---------RAP2.3(3) <-----------HVH21      ----------->RAV1(2) --HSFC1(1)      --------->ZAT2          <---------RAP2.3(2)--------->ANAC46        <---------ANAC58- ->HSFC1(1)      <---------At4g35610     <---------RRTF1(2) <---------TGA1a         <---------ANAC58< ----------RAV1(2)   <---------ANAC58    <---------ANAC46   --------->TGA1a      --------->ARR14(2) < ->HSFB2a(2)     --------->At4g35610 <---------ANAC58      --------------->AtSPL3<---------ARR14(2)-- --HSFB2a(2)     <---------ZAT2      <---------ANAC58<------ZmHOX2a(1) <---------ALFIN1--------->ZAT14   accagggggtcttcgagcctgctgcgtacgattagccagccttgcggcggcaaaaggattagacgtcccccccccatgctacggttccctgcggtccgaa  3471600            <------MYB46(1)            <------MYB83           --------->MYB59        <----------DOF2      <------NtERF2      --------->LBD16      ------>NtERF2     ----------->RAV1(1)     --------->RRTF1(3)     --------->RAP2.3(3)     --------->RRTF1(2)     --------->DEAR3(1)     --------->RAP2.3(2)     --------->RAP2.6(2)    --------->ORA47(2)    --------->ATERF1(1)    <------NtERF2    --------->RRTF1(1)    --------->DEAR4(2)    <-----------------AG    --------->RAP2.3(1)   <---------ORA47(2)   <---------RAP2.3(1)   ------>NtERF2   <---------RAP2.6(1)   <---------RRTF1(1)   <---------ERF1   <---------DEAR4(2)   <---------ATERF1(1)  <---------DEAR3(1)  <---------RAP2.3(2)  --------->DEAR3(1)                                                          --------->ANAC58 --------->RAP2.3(1)        --------->ALFIN1                                  --------->ANAC46 --------->ERF1            --------->ATERF1(1)                                <------NtERF2 --------->ATERF1(1)      <---------ZAT2                                ------>ZmHOX2a(1) --------->RAP2.6(1)      --------->ZAT2                         <---------ZAT18 --------->RRTF1(1)       --------->ATERF1(1)                    ------>NtERF2--------->ANAC58 -------LBD16           --------->ZAT18                         --------->DEAR3(1) ---->GLK1(2)         <------MYB83                             --------->ATERF1(1) -----ARR14(2)        <------MYB46(1)                         <---------At4g35610 ---->ARR14(2)       --------->MYB111(1)                      --------->At4g35610   <xxxxxxxxxxxxxxxx -------->LBD16  <---------TOE2(3)                           <---------DEAR3(1)    --------->ZAT6---- ---------RAP2.3(1) --------->ALFIN1         ------>ZmHOX2a(1)<---------ATERF1(1)----------->RAV1(1) ---------ATERF1(1) <--------P      --------->YAB1          --------->ZAT18  --------->ZAT18     ---- ------->ANAC46  <---------TOE1(3) <---------YAB1           <---------ZAT18  ------>NtERF2       ----   tccggcgccgcattaggttagggtagggggctgggcgataatagttcctctgcatccccaagcgcgctgccctcctaggcgcgcaacactaagtaatcca  3471700                                                                                                    <                               --------->YAB1                                                       -          <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <     ----------->RAV1(1)    --------->YAB1                                                         <-    ------->GAMYB         --------->ARR14(2)                                                       --   --------->MYB46(3)     <---------ARR14(2)                                                -------->HAHB4  --------->ANAC58       <------NtERF2                                                      ---------  ------>MYB46(1)       <---------MYB46(3)                                                 <---------YAB1  --------->ANAC58      --------->LBD16                                                   <---------TOE2(3)  -------->P           <---------ANAC46                                                  --------->YAB1  ------>MYB83        <---------LBD16                                                   --------->ICU4 xxxxxsmallRNA(se3)  ------->GAMYB                                                    <----------DOF2 ----->ANAC58     --------->MYB52(1)       --------------->AtSPL8                <-------GAMYB ------ ----->ANAC58     <---------DOF5.7(2)      --------------->AtSPL3               <---------MYB46(3) <- ----->ANAC46    ----------->HVH21         <---------------AtSPL8              <---------TOE2(3)  ---   agccaacccacattactggctaacggcggataatcatatttcttagaggtactaaatacaactccatgaatgagcaaaatggaggttgcattaatgataa  3471800     <---------LBD16     --------->LBD16   <---------LBD16                           <------ZmHOX2a(2) ------>ZmHOX2a(2)                          --------->ARR14(2) ---------GLK1(1)                           --------->GLK1(2) -------->GLK1(1)                           <---------ARR14(2)                                     -- ------ZmHOX2a(2)                          <------ZmHOX2a(1)                                      <-- --------AGP1 ----------->GT1             ----------->ARR10                      --------->ZAT18<---- ------->ARR11(3)                  <-----------RAV1(1)       <----------DOF2     --------->ZAT14----- >YAB1    <---------ARR14(2)       --------->ALFIN1        <---------At4g35610   <---------ZAT14<---- ---->DOF2--------->ARR14(2)      <-------MYC3------>ZmHOX2a(2)             --------->SPL7      ----- --------ARR11(3)                 ------->MYC3--------------->AtSPL3  *TSS<---------SPL7        <---- ------>RVE1(1)      ---------->DOF2 --------->ALFIN1 <---------ARR14(2)--------->LBD16        <-----   agatctctggggaaaccgctaaaaaaagattgaacatgtgtgggaggatccgaacgaattctgctttcatttcccccgtatggagcactgagtcacttac  3471900                                                                                               <XXXXX                                   ------>NtERF2                                           -------->HAHB4                                 <------NtERF2               --------->At4g35610           --------->YAB1                                 --------->ATERF1(1)        --------->RAP2.6(2)        <---------AHL20(2)          --------->At4g35610   <---------ATERF1(1)       <---------ZAT2              <---------AHL20(1)          <---------At4g35610   ------>NtERF2<------ZmHOX2a(1)                   --------->AHL20(2)        ---------->CDC5        <---------DEAR3(1)         --------->ZAT2       <---------ARR11(3) ------->MYB52(1)     <---------ALFIN1      --------->HSFC1(2)            <---------ATHB12<---------YAB1 -------MYB52(1)     --------->ZAT14        <---------HSFB2a(1)       ------>MYB83<---------AHL20(2) -----ANAC58         <------NtERF2<---------DEAR3(1)      <---------At4g35610  --------->AHL20(1)---- ---->ANAC55(2)      <---------ZAT18        --------->HSFB2a(1)       ------------>CBF--------->AHL20(2) -----ANAC55(2)      <---------ZAT14        <---------HSFC1(2)        ------>MYB46(1) <---------AHL20(2) ---->ANAC46         --------->ZAT18     ==============HOX2a_HOX2a   ----------->RAV1(1)--------->YAB1 -----ANAC58     <---------ATERF1(1)     <------ZmHOX2a(1)--------->At4g35610------->TEIL --------->ICU4 ----TOE2(3) ------>NtERF2     ----------->HVH21------>ZmHOX2a(2)  --------->MYB46(3) --------->AHL20(1)   gttacggtcttcagcgggcaggctgcactctaggcgacggctaggaaggatcgctagaccagcagccaaaccaacaatgaatatataatataatgatagt  3472000                                                                       <----------DOF2                                                                   ------>ZmHOX2a(2)             <---------AHL20(2)             <---------ICU4         ===========================HOX2a_HOX2a          --------->AHL20(2)                --------->ATHB51     --------->ARR14(2)              ----          --------->YAB1                   <---------YAB1        <---------ARR11(3)            ------   <---------At4g35610             <------NtERF2                 --------->ARR11(3)       <----------DOF2   --------->At4g35610     ---------->DOF2 --------->ICU4        <---------ARR14(2)    ------>ZmHOX2a(1) XXXXXXXXXXXXXXXMIR170 ---------->DOF2   --------->YAB1       ------>ZmHOX2a(1)        ============== ----->ATHB12--------->AHL20(2) <---------LBD16        --------->AHL20(2)              ==============   gattcggctcaataaaaaaatgtagaaaagaaagggcggaatagcataattgtccgatttattcctcgatcttctttgaagacttactcctcctttccga  3472100                                                                             --------->ARR14(3)               <----------DOF2                                               --------->ARR14(2)               ------>ZmHOX2a(1)                                             <---------ARR14(3)        ------>ZmHOX2a(1)                                                    <---------ARR11(3)   ===================HOX2a_HOX2a                                            <---------ARR14(2)   ------>ZmHOX2a(2)                 <---------At4g35610                     --------->ARR11(3)   <xxxxxxxxxxxxxxxsmallRNA(se3)     <------NtERF2                           --------->AHL20(1)  <------ZmHOX2a(2)                  --------->At4g35610                     <---------AHL20(1)  =============HOX2a_HOX2a          --------->RAP2.6(2)                --------->ANAC58  ====================HOX2a_HOX2a  <---------DEAR3(1)                  --------->ANAC55(1) <---------ARR14(2)               ------>NtERF2                        --------->ANAC55(2) <---------ARR11(3)         --------->GLK1(2)                          --------->ANAC58 --------->ARR11(3)        --------->ARR11(3)                      <---------AHL20(2) --------->ARR14(2)        <---------GLK1(2)                   <---------AHL20(2) ------>DOF2---------->ID1 --------->ARR14(2)                 --------->AHL20(1) --->LBD16  <xxxxxxxxxxxxxxxxsmallRNA(s)                      <---------AHL20(1)                    < ========HOX2a_HOX2a       <---------ARR14(2)                <---------AHL20(2)                 <---- =========HOX2a_HOX2a    ----------->ARR10             <---------ANAC46--------->ANAC46 ------>ZmHOX2a(1)   aaagatcgtccttggtccttttgacataagattctcggccgctcaagagactctctctcgtatatatatttatacgcaatatcttgactcctactacccc  3472200                                                           <---------ALFIN1                                                     <---------TGA1a                                                     <---------O2                                                     <---------bZIP60(2)                                                     ==================================bZIP_DOF                                                     <---------At4g35610                                                     ----------->RAV1(2)                                                     --------->At4g35610                                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  ----------->HVH21                                                 <-----------HVH21                                               --------->LBD16                                               <------NtERF2                                              <---------ANAC46                 <---------YAB1                      =========================================bZIP_DOF     <----------DOF2     --------->LBD16  <----------DOF2        <---------LBD16            <---------CCA1(2) ----------DOF2<---------WOX13(1)        <---------HSFB2a(2)          <---------ANAC58 -----ALFIN1 --------->ATHB12            --------->HSFB2a(2)          <---------ANAC58   <----------DOF2   tcctttccgaaaaattgattgagtctttgtctaagcgagttttctaggccgggtgacctggccacttctattgcttatcttttcattacatcttttgttc  3472300                                   --------->LBD16                                 <---------LBD16                               ------>MYB83                               -------->P                               ------>MYB46(1)                              --------->MYB55(1)                              <---------ALFIN1                             --------->MYB46(3)                             --------->DEAR3(1)                             <---------MYB46(2)                             --------->AtMYB61                             <---------MYB111(1)                             <---------MYB55(2)                                                     -                             <---------MYB111(2)                                              <------                            --------->ANAC58                                              --------->ICU4                            ------>MYB46(1)                         <-----------HVH21------>NtERF2  -                            --------->ANAC58                        --------->LBD16 --------->DEAR3(1)                            ------>MYB83                           --------->ANAC46--------->ATERF1(1)       <----------DOF2      --------->ANAC46              ------>NtERF2            <------NtERF2   <-      --------->HSFB2a(1) <---------ALFIN1                --------->LBD16         <---------ATERF1(1)    ------>NtERF2         --------->AtMYB61              --------->ANAC46         ------>NtERF2    <-   <---------ZAT18       --------->MYB46(3)             --------->MYB46(3)       ----------->HVH21 <-   --------->ZAT18 ----------->RAV1(2)                <-----------GT1            --------->ETT(2) <-- <---------At4g35610   <---------PCF5     <------ZmHOX2a(1)  <---------ALFIN1    <---------DEAR3(1)<-   tctagcggactttctgacttcaactggaccacccacccggactaggaacccgaatttatccgcccatccccgtcgaagaaggggcgacggccttgattat  3472400  Previous    Next  AGI:  At2g07733.1    Description:  pseudogene, similar to NADH dehydrogenase subunit 2, blastp match of 94% identity and 2.0e-77 P-value to GP|1667390|gb|AAB18755.1||M81726 NADH dehydrogenase subunit 2 {Oenothera berteriana} Range:  from: 3470312    to: 3471870    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g07734.1    Description:  ribosomal protein S4 (RPS4). similar to ribosomal protein S4 [Brassica napus] (GB:AAC26507.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942) Range:  from: 3472302    to: 3473689    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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