Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <----------DOF2                                                <---------MYB52(1)                                               --------->LBD16                                              --------->ANAC46                                             <---------LBD16                                          <---------GLK1(1)                                         <---------ARR14(2)                                         <-----------ARR10              ----------->GT1            --------->ARR14(2)                    --------->DAG2         <---------ATHB12           <---------ANAC46                          ---------->DOF2 <---------ICU4                    XXXXXXXXXXXXXXXXXXXX>MIR780.2            ------->GAMYB --------->YAB1         --------->ZAT18  ------->TEIL              --------->YAB1 ---------ATHB12        <---------ZAT18 <---------CCA1(2)         <---------YAB1        --------->MYB52(1)   caataatcccactcactggtaaatagcgcaatacttcttcgtgaatctccgctatttgaatatggaacatcataacaacgaaaaggaatgaaacggctat  3467700                                                                           ---------->DOF2                                                                        <---------HSFB2a(2)                       <------ZmHOX2a(2)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <---------YAB1             ---------->DOF2       --------->HSFB2a(2)                      --------->ARR11(3)       >>>>>>>>>MYB98          <---------ANAC46                      <-----------ARR10       ------>MYB83           <-----------HVH21            ---                      <---------ARR11(3)      --------->MYB52(1)    --------->ALFIN1              ---   ------>ZmHOX2a(1)----------->ARR10         ------>MYB46(1) --------->TOE1(3)                   ---   ===========================HOX2a_HOX2a   <---------MYB59  ----------->RAV1(2)                -----   agctcctatatgaactactgggaagatcatagcgaagaagtcgagacctaacaaaagaagtaaacctgaagtgtcgcgaaagactgggatgggaaacaaa  3467800                      <-------MYC3                      ------->PIF4                      <-------PIF4                                                             ------           <---------ARR14(2)                                                                  ------           --------->ARR14(2)                                                                 -------           <---------GLK1(2) ------->GAMYB                                                    -------         --------->LBD16     --------->YAB1                                                  <-------       <---------LBD16------->MYC4                                                           <-------      --------->MYB52(1)    --------->MYB46(3)                                               --------      ------->TEIL    ------->MYC2                                                           <-------   --------->HSFB2a(1)------->PIF5                                               --------->DEAR3(2)   <---------HSFB2a(1)------->MYC3                                            <---------SPL7 --------  <---------KAN4(2)   <-------PIF5                                        --------->YAB1     -------- ------>ANAC58        <-------MYC4                                       <---------YAB1      <------- ------>ANAC58        <-------MYC2                                 ---------->DOF2        ------>ZmHOX2a(1) ------>ANAC46      ------------>OsbHLH66    ---------->DOF2  --------->MYB52(1)--------->SPL7<------ ---->MYB52(1)     <------------OsbHLH66    --------->AtMYB61 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   acggaatgtaccggatttttagcacgtgcaaccatcaaaccagagaccaaagcagggctcgacaaaacagaaagtatcatggtaccgtcgtccttccctg  3467900      <----------DOF2 --->LBD16 ----->HVH21 -------->AGL15 -->LBD16  <---------YAB1 ----------AG                                                      ------>ZmHOX2a(1) ----------AGL2                  ---------->DOF2             <---------MYB46(3) --------->AGL1        <---------ANAC58                     <--------P ----------AGL3        <---------ANAC58                    <-------GAMYB               --------->ANAC46 --------->AGL3    <---------ANAC58                       <---------MYB46(3)           --------->ANAC58 --------->AGL2    <---------ANAC58                      <---------DEAR3(1)            --------->ANAC58 ----------AGL1  <---------ARR11(3)                     <---------ZAT18         <<<<<<<<<TBF1 ---------AGL15  --------->ARR11(3)                 --------->AtMYB61  <---------AHL20(2)      <-----   aaatggaactttcatgctagttcttgcttcagcatgaaagtcgatctattacgaccagcgcggttgttcctatttcattttcttcttccaagcccttctt  3468000                               --------->TOE2(3)                            --------->ARR14(2)                            <---------GLK1(2)                         --------->ANAC58                         <---------ANAC55(2)                         --------->ANAC46                                  *TSS         --------->ZAT14         --------->ANAC58--------->ANAC55(2)                               ---------->DOF2    -------         --------->ANAC58--------->ANAC58                               ----------->RAV1(1)--------->ANAC46     --------->ANAC58   <---------LBD16                       --------->ARR11(3)        <---------ZAT14     --------->ANAC58  --------->MYB52(1)     <---------AHL20(2)     ------->TEIL  <---------ZAT14   ---------->DOF2   <---------ANAC58        --------->AHL20(2) ------>ZmHOX2a(2)  --------->ZAT14 -----DOF2           <---------ANAC58  ------->TEIL     <----------DOF2--------->MYB46(3)  --------->ZAT6   tcttagaaagcactcactgagttacttacggaatctcaatgcatccatttaatgcattcttttcgatcttgtacccacagagcggtagactgaacaccac  3468100                                                                                  <---------ANAC58                                                                                  <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                  <---------ANAC46                                                                                  <---------ANAC58                             <---------MYB52(2)                                  <xxxxxxxxxxxxxxxxxxx                        --------->ANAC46                                     <---------ATHB12       <                        --------->AtLEC2                                 ------------>CBF          --                        --------->ANAC58                                --------->CCA1(2)          <-                        --------->ANAC58                               <---------ARR14(2)         <--                 --------->DAG2                 --------->GLK1(1)      <---------ARR11(3)        <---                 <---------------AtSPL8--------->ZAT14                 --------->AGP1            ----           <---------------AGL15       <---------ZAT18                 --------->ARR14(2)     <------         ----------------->AGL3        <---------ZAT14                --------->GLK1(1) ---------->DOF2  --------->RVE1(1)  <-------TEIL  --------->TOE1(2)         <---------AtMYB61--------->YAB1  <xxxxxx ---->RAV1(1)  ---------->DOF2     --------->TOE2(2)      <---------SPL7<------ZmHOX2a(2)   ---------   aaaaatatcgattcaaaaaaaggtacatgcaactaaacctgtgaactcagatagccttgtggtatggtagcgagatccaatcttgagtgaaaaagatacc  3468200                                                                                               ------                                                                                          --------->ARR14(2)                                   --------->WOX13(1)                                     ------->TEIL                                --------->At5g28300                                     --------->ZAT14                                <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 ------>MYB83-------         <----------DOF2     --------->LBD16                                      <xxxxxxxxxxxxxxxxxx xsmallRNA(se3)             <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                      ------>MYB46(1) ------NtERF2             <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxxx ---->NtERF2             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                     -------->P<xxxxxxxx --------ATERF1(1)     <---------ICU4                                            <xxxxxxxxxxxxxxxxxxx -------DEAR3(1)       --------->YAB1     ---------->DOF2                       <---------MYB59<----- ------LBD16          <---------YAB1 <xxxxxxxxxxxxxxxxxsmallRNA(fl3)            <---------MYB111(1) < ----->LBD16     --------->YAB1----------->GT1        --------->WRKY12        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---At5g28300   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->WRKY38(1)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(s2)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <-----------GT1<-------- >ARR11(3)     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------->DOF2     ------>ZmHOX2a(1)<xxxxxxxxxxxxxx   gcggcttcaatctttttcaacataatcatcgcgcagtaaatcaacaaagcccaaagttgactctctgtctccttcaagtttacctactactgtacccgcg  3468300                     --------->ANAC46                    <xxxxxxxxxxxxxxxxsmallRNA(se3)             <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->GLK1(1)                   --------->ANAC55(1)     <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ANAC58 --->O2     <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2) -->LBD16 --------->ANAC46                --------->ANAC46                                       <--- xxxsmallRNA(se3)--------->CCA1(2)        --------->ANAC58                                <---------ZAT14 xsmallRNA(si3) <---------ARR14(2)       <---------LBD16                                  <xxxxxxxxxx xxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------ZAT14     <---------GLK1(2)    ------->GAMYB   ----- xsmallRNA(se3) --------->ARR14(2)     --------->ZAT14     <xxxxxxxxxxxxxxxxsmallRNA(se3) --------->ZAT14 ----ANAC46----------->RAV1(1)         --------->ZAT18   --------->ICU4      --------->YAB1  <------- xxxxxxxxxxxxxxxxsmallRNA(i)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->WOX13(1) <xxxxxxxxxxx -LBD16------>ZmHOX2a(2)---------->DOF2<---------REM1(2) <xxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxx xxxxxxxxxxxsmallRNA(fl3)    <----------DOF2             <---------YAB1      --------->MYB52(1)------   tgaatatgatctccaccagatagacgtaaagctttagctagtacacggaagtgcaaaccatgattcttctgtctatcaataacagcatgcattgcacggt  3468400                                                                                       --------->GLK1(1)                                                                                       <---------GLK1(1)                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                               <---------YAB1 <xxxxxx                                                                              <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                              <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   --------->ARR11(3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------ARR14(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->ARR14(2)      <xxxxxxxxxxxxxxxxxxxxxxxx    <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <------ZmHOX2a(1)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->At5g28300     --------->AtLEC2 <xxxxxxxxxxx ------MYB46(3)    <---------ARR11(3)          --------->LBD16         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(i2)                     ----------->GT1    <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---->ALFIN1--------->ANAC58                  <---------ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --DEAR3(1) --------->ANAC58             --------->ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxsmallRNA(se3) <----------ID1  <---------LBD16  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxsmallRNA(se3)  --------->HSFB2a(2)<---------ARR14(2)  <---------MYB52(1)<xxxxxxxxxxxxxxxxxxxxx --->At5g28300   --------->ICU4      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ggatgtgaagaagtaggccattatctcgaatgagccaaactagtatttgcggtgaatccccctgttaagtagtcatgcattacgataggaactcccaatt  3468500           <---------At4g35610       <xxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------ARR14(2)      --------->ARR14(2)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->LBD16        <----------DOF2    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ANAC46    <---------ZAT18 xxsmallRNA(se3)                       <---------LBD16   <---------ICU4 xxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xsmallRNA(fl3)<----------DOF2   <---------TOE1(2)       ---------->DOF2 xxxxxxxxsmallRNA(se3)          <---------AtLEC2        <---------ATHB51                   <--------- xxxxxxsmallRNA(se3)  <---------ICU4 ------->TEIL       <---------ATHB12  ----------->RAV1(2)    <---   ctctggcaaatacagctcttttgatcatttcttcgcatgtacccggagtagcattcaaataatgccctttgattccacctgtttcagcctgtgctttata  3468600  Previous    Next  AGI:  At2g07731.1    Description:  pseudogene, similar to NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3). (Field mustard), blastp match of 96% identity and 3.7e-99 P-value to SP|Q01825|NU6M_ARATH NADH-ubiquinone oxidoreductase chain 6 (EC 1.6.5.3). (Field mustard) {Brassica campestris} Range:  from: 3467196    to: 3468075    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g07732.1    Description:  pseudogene, similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, blastp match of 96% identity and 3.2e-94 P-value to GP|17939362|gb|AAA33356.2||L22440 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit {Gyrostemon tepperi} Range:  from: 3468165    to: 3468771    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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