Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->ANAC58                           ------>ZmHOX2a(1)                        --------->ANAC58                           --------->LBD16                      ---------->DOF2                             <---------LBD16               <------MYB83 <---------ATERF1(1)             <-----------HVH21               <------MYB46(1)   <---------ALFIN1        <---------At4g35610        ----------->GT1              <---------AtMYB61<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------YAB1 <----------DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------CCA1(2)--------->At4g35610     <---------AtLEC2 ---TOE1(2) <---------MYB52(1)<---------ALFIN1        ---------->DOF2    <---------AHL20(2)   -------   ttccttctagtctcgtttggtttcgaaagcctccccctccctgtctcttactctttgaaagctgtcatcctggatttatttttgaatggtttctttgttc  3417800                                                                                              -------                                                                                              <------                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                            -------->P                                                               ------->TEIL           ---------->DOF2                 <----------ID1                      ----------->HVH21          <---------ANAC58               ---------->DOF2                 <---------RAP2.6(2)              --------->ANAC46    -           ---------->DOF2                    --------->RAP2.6(3)     --------->At4g35610   --------- --->ID1<---------WOX13(1)                 ------->TEIL      <---------ZAT18    <---------ANAC58  ---   tcttatttggattgaaagaaagacaaaacttcattttcttcgacgaatttcggctatgaccaatgcaccaatagctgaataggcgtaacaaagctacctg  3417900         <-------TEIL         --------->ZAT18         <---------ZAT18        --------->ALFIN1 -->TOE2(3)------->TEIL ---------AGL15 -------->AGL15 --------->AGL1 ----------AGL1 ----------AG --------->AGL2                               --------->LBD16     <---------GLK1(2) -------->DAG2                       <---------ANAC58  --------->AHL20(2) >MYB52(1)<---------ALFIN1           <---------ANAC58  <---------AHL20(2) ------->DOF2                        <---------ANAC46 --------->AHL20(2)        ---------->DOF2   aaaaggcaaggtgcaccttgggattgaaatcgacgaattgcgttttgcccgagagatttatttagaaagattatccatcggataaagaatgcaaaaatag  3418000                                               <---------LBD16                                               --------->LBD16                                              <-----------RAV1(2)                                              <---------HSFB2a(2)                                   ----------->RAV1(1)                                   =======================RAV                                  --------->PCF2                      <---------LBD16--------->ZAT6                                                --                    <---------REM1(2)<---------ALFIN1                                              --                  <---------ARR14(2) --------->AtMYB61                                            <--                  --------->ARR14(2)<------NtERF2                                                ----               <---------ANAC58  <------NtERF2<---------LBD16                           <---------ZAT18               <---------ANAC58  --------->ATERF1(1)                                    --------->ZAT18               <---------ANAC46  --------->ZAT18                                        <-------TEIL          ---------->DOF2       <---------ATERF1(1)            <---------ICU4          --------->ALFIN1          --------->MYB52(1)   <---------RAP2.3(3)   <----------ARF1         --------->ZAT18     ----     --------->AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------DEAR3(1)>>>>>>     <---------AHL20(2)--------->ANAC46       --------->HSFB2a(2)            <---------ZAT18<--------   aaagaatataaataaaggcgtatacacgggaagggggcaccactacttccagggggagactagcctcattacttcttagtgggcgagaggtgcgcctaac  3418100       ------>MYB83       ------>MYB46(1)     --------->MYB46(3)   ------>MYB46(1)   -------->P   ------>MYB83  --------->MYB55(1) --------->DEAR3(1) <---------MYB111(1) --------->MYB46(3) <---------MYB59 --------->AtMYB61 <---------MYB111(2)             <---------ANAC46 <---------MYB46(2)           ----------->HVH21 <---------MYB55(2)         <---------At4g35610 ---->MYB83                 --------->ZAT2 ---->MYB46(1)              ----------->RAV1(2) -------ALFIN1              <---------ZAT2                            --------->ZAT18 ----->MYB46(3)   <---------At5g28300      <---------WOX13(1)         <---------ZAT18 --->GAMYB       --------->MYB52(1)   <---------At4g35610<------------CBF    <----------DOF2 >>>MYB98<---------ATHB12   --------->At4g35610     <------------CBF<---------At4g35610      -------- -MYB46(2)--------->YAB1  <-----------RAV1(2)     <---------YAB1  <-----------GT1    <-------GAMYB   ccacctacccactcataaatcacggtgttcagctgacttgaactgatagacccttattgtattggaatttagcgcccatcttttgactgttgtcaacaaa  3418200                                                                                          <---------ICU4                                                                                      <------ZmHOX2a(1)                                                                              ------>ZmHOX2a(1)                                                                            <---------ANAC46                                                                            <---------ANAC58  ------------>CBF                                         xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ->MYB46(3)               *TSS            XXXXXXXXXXXXXXXXXXXX>MIR406       <---------ANAC58   tctcttcaatgttcgattctactctatgttagaacatttctgtgaatgctattctaatctaagtggtcttattctgtgtcctgtgctaggaagcattact  3418300                                        <---------WOX13(1)                                --------->ARR14(2)                                      --------->ATHB12                                    <---------ARR14(2)                                     --------->AHL20(2)                               <---------LBD16                                     <---------AHL20(2)                               --------->LBD16                                 <---------YAB1                  <---------DAG2       ------>ZmHOX2a(1)                              --------->ARR14(2)                 <----------DOF2------>ZmHOX2a(1) <----------DOF2              <---------ARR14(2)              <-----------GT1 ----------->RAV1(2)   cttcttttcattccaaattcaagaatacgaccgatacgattaattggtctgtgtgcctctcttattacttttttgtattctcctgttcctcggatacaat  3418400                                --------->ANAC58                               <---------GLK1(1)           --------->TOE2(3)                              ---------->DOF2        --------->YAB1                          <---------LBD16           <---------YAB1                     --------------->AGL15  <---------ANAC58              <---------ANAC46                  --------->TOE2(3)         <---------ANAC58        <---------AHL20(2)     <---------               <---------CCA1(2)--------->ANAC58 ------>ZmHOX2a(1) <---------YAB1   --------->At5g28300   tcgactcttctacggccaaatctcaatttgtggaaagccttcgatggcttccttatgaaaacatcaatttttatttgggtatagacggtatctctttatt  3418500                                               <------MYB83                                               <------MYB46(1)                                              <---------AtMYB61                                             <--------P                                            <---------ANAC58                                            <-------GAMYB                                            <---------ANAC58                                            <---------ANAC46                                           <------MYB46(1)                                       <---                                           <------MYB83                   ----------->GT1        <---    <---------ARR11(3)           <---------AtLEC2xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <---    --------->ARR11(3)      --------->ARR14(2)<---------MYB46(3)      ---------->DOF2       <-------- -DOF2   <-----------GT1------>ZmHOX2a(2) <---------MYB46(3)    --------->CCA1(2)<-----------GT1 ----   cttcgtgatattgaccacatttctgatccctatttgcatttcagtgggttggtctggtatgagaagttatgggaaagagtatattacagcatttttaatt  3418600                                    ------>ZmHOX2a(2)                                  <---------AGP1                                  --------->ARR11(3)                                  --------->AGP1                                  <---------ARR11(3)           <---------ICU4         <---------ARR14(2)                                             ----           -------->HAHB4         --------->ARR14(2)                   --------->WOX13(1)        ----           --------->YAB1         --------->ARR14(3)              --------->ZAT18                ----           --------->ATHB12 --------->ANAC58                     <---------ANAC58                <---          --------->ICU4 --------->LBD16                         <---------ANAC58                <---          <---------ATHB12  --------->ANAC58                 ---------->DOF2                --------- ------ANAC46          <---------LBD16                     --------->LBD16                --------->At4g35610 ------ANAC58      --------->ALFIN1<------ZmHOX2a(2)       --------->ANAC46          <---------LBD16 ------ANAC58    <---------ANAC46 <---------ARR14(3)      <---------HSFB2a(2)       <---------ANAC46 -AHL20(2)<---------YAB1<---------ANAC46                  --------->HSFB2a(2)  <-----------RAV1(1) ------->GT1  ------>ZmHOX2a(2)  <---------CCA1(2)       <---------LBD16<---------ARR14(2)<---------At4g35610   cgtgaatttctaatgatcgccgtgttccgcatgctagatcttctactattctatgtttttcccgaaagcgtgccaatccctatgttgtgcggagcggagt  3418700  Previous    Next  AGI:  At2g07717.1    Description:  pseudogene, similar to NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard), blastp match of 99% identity and 2.0e-226 P-value to SP|Q04050|NU4M_BRACM NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard) {Brassica campestris} Range:  from: 3418226    to: 3424174    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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