Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <---------ANAC46                                   --------->RAP2.3(2)                                   --------->DEAR3(1)                                   --------->RRTF1(3)                                   --------->RAP2.3(3)                                  --------->RRTF1(1)                                  <------NtERF2                                  --------->ORA47(2)                                  --------->RAP2.3(1)                                  --------->DEAR4(2)                                  --------->ATERF1(1)                                 <---------ATERF1(1)                                 <---------RAP2.3(1)                                   ------>ZmHOX2a(2)                                 ------>NtERF2                                   <---------ANAC58                                --------->DEAR3(1)               <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            --------->MYB52(2)                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ALFIN1    <---------At4g35610                                <---------DEAR3(1)             --------->PCF2    <---------ANAC58         --------->RAP2.3(3)   --------->RAP2.3(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------ZAT18         <---------ABI4(2)            ------>ZmHOX2a(2)   <-------TEIL       --------->ZAT18         --------->ATERF1(1)        <---------ARR14(2) <---------ANAC58 ---NtERF2                    <---------ATERF1(1)        =====================================HOX2a_HOX2a -----DEAR3(2)               <---------DEAR3(1) ----------->RAV1(2)   ----------->RAV1(2) ----DEAR3(1)           ------->MYC3  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ANAC58 ---MYB52(1)            <-------MYC3------>NtERF2 ----------->HVH21 <---------ALFIN1  --------->At4g35610 ----HVH21            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ARR14(2) <---------ANAC46 ------- >DEAR3(1)           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <------ZmHOX2a(1)  xxxxxxxxxxxxxxxx>smallRNA(i)   gggcataagcgccctcttgctacccatatgcgaggcgccgtcttagccttccctgaccaggatcgctcccacacctgtagcgttcgtgatcggcctactc  3399000                                                                                                    <                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  <--                                     --------->MYB52(1)                                           <--                                     xxxxxxxxxxxxxxxx>smallRNA(i)                             -------                                    ---------->DOF2                                      --------->ZAT18                                   ------->GAMYB  <---------ANAC46                   <-----------RAV1(1)                                   --------->AtMYB61                            --------->ANAC58<----                                  --------->MYB46(3)                        ------>NtERF2------>NtERF2                                 --------->ANAC58 <---------ANAC58         <---------ETT(1) xxxxxxxxx                                 --------->ANAC58 <---------ANAC55(2)      --------->LBD16--------->ATERF1(1)                               --------->MYB46(3) <---------ANAC58         --------->ANAC46 <--------                        --------->HSFB2a(1)    <---------ARR14(2)         --------->HSFB2a(2)--------                     <------ZmHOX2a(1)        ----------------------->TaNAC69(2)--------->ANAC58-----        --------->ATHB12<---------HSFB2a(1) --------->ALFIN1              <---------HSFB2a(2)<------- -->ANAC46   ---------->DOF2 --------->ANAC46<---------MYB46(3)  <---------ALFIN1    <---------AtMYB61   aactgtgtatcgattgaaaggcaggaatttcccacaaccaaagggagtggttacgtccagtatgtccccccttcttcccgacatgctatggtgccccggg  3399100                                                        <------ZmHOX2a(2)                                                       <-----------ARR10                                                       --------->AGP1     <------ZmHOX2a(1)         <------NtERF2           <---------AGP1    <------MYB83              --------->LBD16          --------->ARR14(2)    <------MYB46(1)          <------NtERF2        <-----------HVH21  <--------P                 <----------CDC5      <---------ARR14(2) ------MYB83                <---------At4g35610   --------->ARR14(2) ------MYB46(1)             <------NtERF2       --------->LBD16 ------->MYB111(2)          --------->At4g35610--------->HSFB2a(2)                           <------- --------MYB46(3)     <---------ARR14(2)      <---------LBD16                                -------- ------->MYB111(1)    --------->ARR14(2)  ------>NtERF2--------->ARR11(3)                  <--------- ------->MYB55(2)     <-----------ARR10   --------->LBD16------>ZmHOX2a(2)             --------->MYB52(1) ------>ALFIN1        --------->SPL7 --------->MYB46(3)<---------ARR14(2)             <---------ZAT14 -------ANAC46       <---------CCA1(2)    <---------ATERF1(1)                         <---------REM1(2) ------P           <---------ANAC55(2) --------->At4g35610                          <---------bZIP60(1) -------MYB55(1)   <---------ANAC58  <---------MYB55(2)<---------ARR11(3)       <-----------HVH21 -->LBD16  <-----------HVH21<---------LBD16 <---------SPL7                      <---------MYB52(1) -----ANAC46       <---------ANAC58----------->RAV1(1)<---------CCA1(2)        ----------->GT1   ---- xxxxxxxxxxx>smallRNA(le3)  --------->LBD16--------->ATERF1(1)                 --------->LBD16 <----- -LBD16  <---------MYB46(3) ------>NtERF2--------->RAP2.6(2)                   --------->At4g35610 ->LBD16<---------ANAC58   --------->DEAR3(1) --------->SPL7                 <---------LBD16 -------- ---->ALFIN1       --------->ANAC55(2)------->GAMYB<------ZmHOX2a(2)<------NtERF2----------->HVH21  - --LBD16<---------ANAC58  <---------LBD16--------->DEAR3(1)       --------->ANAC46  --------->bZIP60(1)   gtgggtaggagcgggtcgagtccgtatcgccgcggagcaacagccgcgtccggatcagatctatctactcggcaattcatccggtgacttcacggtcgcc  3399200                                                                          <------NtERF2                                                                         --------->LBD16            -                                                                         ------>NtERF2           ----                                    <-------TEIL                        --------->ANAC46        ----- --ETT(2)                         <---------ARR11(3)                    --------->LBD16        <----- ->RAP2.6(2)                      --------->AGP1                       <---------LBD16       -------- --HVH21                          --------->ARR11(3)                  --------->MYB52(1)  --------->ANAC58 ------>DOF2                     --------->GLK1(1)                 --------->At4g35610  ---------->DOF2 -NtERF2                    <---------At4g35610             --------->ANAC58 <------NtERF2--------->ANAC58 ->ETT(2)              <---------GLK1(1)       --------->ICU4      --------->ZAT2   <xxxxxxxxxxxxxxxx --------->DOF2      <---------ICU4<------ZmHOX2a(2)        --------->ANAC58------>NtERF2--------->DAG2   aaagaagccccaagaagcatcaaacatttccgatgagatccatggagcaattcttagatagcaagcactagctcccggcgcgacttcataaaaagcaatc  3399300                                                                                                  <--                                                                                              <xxxxxx                                                                                            ---------                                                                                          --------->MYB46(3)                                                                                          <---------MYB52(2)       <------ZmHOX2a(2)             --------->ICU4                                     <---------ARR14(2)      --------->ARR11(3)         <xxxxxxxxxxxxxxxxsmallRNA(s)                        --------->ANAC58      <---------ARR11(3)       <---------ZAT6                                        <---------ANAC55(2)  --------->CCA1(2)       --------->ANAC46                         --------->TOE1(2) --------->ANAC46 -------->YAB1            --------->ANAC58                         --------->TOE2(2) --------->ANAC55(2) ------>DOF2              --------->ANAC58                 <---------HSFB2a(2)       --------->ANAC58 ---->YAB1               ------->TEIL<---------YAB1----------->RAV1(2) --------->LBD16  --------->ARR14(2) ----ATHB12           --------->ANAC58 ---------->DOF2     --------->HSFB2a(2)      <---------LBD16 ->WOX13(1)           --------->ANAC58<---------ICU4       ------>ZmHOX2a(1)   --------->TOE1(2) <--- xxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)------>ZmHOX2a(2)    ----------->RAV1(2)----   aaagataagatcgaagagaatgaaacgcacgtagtggtcattatagcgcttccttctgatcctagaaaacgtccgaaaaaacctgctacggaactaccga  3399400                                                                                           <---------WOX13(1)                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                                       <---------WOX13(1)                                <---------AHL20(2)                                    <------------CBF                                --------->AHL20(2)                                   --------->ATHB12                               <---------AHL20(1)                               <xxxxxxxxxxxxxxxxxxxx                               <---------AHL20(2)                              ------>NtERF2<-------- <-------PIF5                  *TSS   <---------ANAC58                       <---------RAP2.6(2) ------->PIF5            <---------ANAC55(2)                                <---------At4g35610 ---------RAV1(2)        --------->ANAC55(2)                                --------->RAP2.6(3)    <- xxxxxxxxxxsmallRNA(s)  <-------TEIL  <---------ANAC58           ------------>CBF   <---------ATHB12 >MYB52(1)             --------->CCA1(2)               --------->TOE1(3)    --------->At4g35610<----- ------ZAT2      <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)---------->DOF2  <xxxxxxxxxxxxxxxxsmallRNA(s) ----->ZAT2 <---------YAB1     --------->AHL20(2)      --------->TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   gcaggggcaaaaatacgataagtagatacataatttaatttcgagtgtgatcaaaaacctaaaatcagacaattacagagcggccagtgattgagtgata  3399500                                                                                            ---------                                                                                           --------->HSFB2a(2)                                                                                      <xxxxxxxxxxxxxx                                                                                     <----------DOF2                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                     --------->ARR11(3)     <---------WOX13(1)                                                     <---------ARR14(3)    <xxxxxxxxxxxxxxxxxxxxxxxxx                                                     <---------GLK1(2)    --------->ATHB12 <---------LBD16            --------->LBD16                          --------->ARR14(3) <---------WOX13(1) <---------HSFB2a(2)           --------->HSFB2a(2)                 --------->ANAC58  <---------ALFIN1 <xxxxxxxxxxxxxxxxxx          <---------LBD16           ----------->GT1  <---------ARR14(2)<---------ANAC58   <---------ANAC46          --------->SPL7           <---------------------WRI1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <---------SPL7            --------->ICU4     <---------ARR11(3)<---------ANAC46   <---------LBD16       <---------TGA1a          --------->CCA1(2)  ----------->ARR10   <---------ANAC58  <---------LBD16   --------->HSFB2a(2) <---------WRKY18(1)     --------->ANAC58 <---------ALFIN1 ------->GAMYB   <---------HSFB2a(2)----------->HVH21        --------->ANAC46--------->LBD16--------->MYB52(1) xsmallRNA(fl3)       --------->ETT(2)     --------->MYB52(1)<xxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>NtERF2 -ZAT6 --------->TGA1a<---------ETT(2)   <---------MYB52(2)  <xxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxx --------GLK1(1)  --------->HSFB2a(1)    <---------MYB111(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----WOX13(1)     <---------HSFB2a(1)    <---------MYB46(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   gatttctcgacgtccggagaacgctcgaccgaagaaatgagtaactaacaaggaagattttgttccccaacttgcttgattaacgggcattttcggggac  3399600   <------NtERF2   <---------At4g35610   --------->At4g35610                                --------->ANAC58 --------->ZAT18                            --------->AHL20(2) <---------ZAT18                           <---------AHL20(2) >LBD16      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ANAC58 xxxxsmallRNA(fl3)                         --------->AHL20(2)    ----------->GT1 xxxxxxxsmallRNA(fl3)                      <---------AHL20(1)   --------->DAG2 xxxxxsmallRNA(fl3)             ------>ZmHOX2a(1)   <------ZmHOX2a(1) xxsmallRNA(fl3)            --------->ARR14(2)    <---------TOE1(3) xxxxxsmallRNA(fl3)        --------->GLK1(1)<---------AHL20(2)---------->DOF2                -------- xxxxxxxxxxxxxxxsmallRNA(i2)<---------ARR14(2)    <---------TOE2(3)      ---------->DOF2     --------   tagcccgcttcccattactccaagagggcaattcctcgcacataataaaattaaggaagccattgaaaggtgactaaaagaccagaaatagggactaccc  3399700                                                                             <---------TCP20                                                                          --------->ANAC58                                                                          --------->ANAC46                                                                          --------->ANAC58                                                                       --------->ZAT14                                                   --------->MYB52(1)  <---------ZAT14               --------->ANAC58                 --------->YAB1         <---------SPL7     --------->ATHB12       ------>NtERF2       <---------ICU4   <---------GLK1(1)     --------->YAB1        --------->LBD16 <---------WOX13(1)   <---------ARR14(2)     -------->HAHB4        ------>NtERF2 --------->ATHB12   <---------LBD16  ------->TEIL    <---------YAB1        <---------RAP2.6(2)  <---------YAB1   --------->ARR14(2)  --------->AHL20(2)    <---------ATHB12     <---------LBD16<---------AHL20(2) <---------ANAC46  --------->PCF2<------ZmHOX2a(1) ->MYB52(1)    --------->ANAC58     ----------------->AGL3 <---------ANAC58--------->DEAR3(1) >P<---------TOE2(3)  <----------DOF2   --------->AHL20(2) <---------ANAC58----------->HVH21     ----   gagctaatgatagaggcaagaacactttccggccaagtcccattaattgatcataacgatatcgtggaaatgctgcacggacccatatatataggaacag  3399800                                                                      ------>NtERF2                                                                      --------->RAP2.6(2)                                                                     <---------RAP2.6(2)                                       ===============================HOX2a_HOX2a                                      ================================HOX2a_HOX2a                                      --------->HSFB2a(1)            <---------DEAR3(1)                                      <---------HSFB2a(1)       <---------ARR14(2)                                      <------ZmHOX2a(2)         --------->ARR14(2)                                     --------->ARR14(2)        <------ZmHOX2a(1) --------->LBD16                                     <---------ARR11(3)    =============================HOX2a_HOX2a                                     <---------ARR14(2)    ------>ZmHOX2a(2)     <---------HSFB2a(2)                                     --------->ARR11(3)   ==============================HOX2a_HOX2a                                     <---------ARR14(3)   <------ZmHOX2a(2)      ------>ZmHOX2a(1)                                     --------->ARR14(3)   --------->CCA1(2)      --------->HSFB2a(2)                                  --------->LBD16        --------->ARR14(2)    ----------->RAV1(2)                                  <------NtERF2          <---------ARR11(3)  ------->GAMYB                                 <---------LBD16         --------->AGP1------>NtERF2                                 --------->LBD16         --------->ARR14(3) --------->MYB46(3)                                <---------LBD16          <---------ARR14(3)------>MYB46(1)         --------->TOE2(3)<------ZmHOX2a(2)              --------->ARR11(3)------>MYB83       ------->TEIL      <---------ARR14(2)              <---------AGP1<------NtERF2---------->DOF2      <---------ARR14(2) --------->AGP1------>ZmHOX2a(2) <---------ARR14(2)-------->P            <--- ------>DOF2             --------->ARR14(2)            ----------->ARR10  <---------ALFIN1      <----   aaagagaagaaccttgatactaaaccagatcgagcccgggatcttcttgaaaatgggaagatctaggataggcggccaacctcctggaaagaacaatgtg  3399900  Previous    Next  AGI:  At2g07711.1    Description:  pseudogene, similar to NADH dehydrogenase subunit 5, blastp match of 97% identity and 2.2e-244 P-value to GP|1066145|dbj|BAA07176.1||D37958 NADH dehydrogenase subunit 5 {Malus x domestica} Range:  from: 3397155    to: 3399431    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g07786.1    Description:  pseudogene, similar to NADH dehydrogenase (ubiquinone), blastp match of 91% identity and 9.4e-39 P-value to GP|903844|gb|AAA70292.1||M63034 NADH dehydrogenase (ubiquinone) {Oenothera berteriana} Range:  from: 3399654    to: 3399909    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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