Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   ------->MYB52(1)                                                                                   - ---->At5g28300                                                                                     - ---GAMYB                                                                                           < ----MYB46(3)                                                                      ------>NtERF2    < ---DEAR3(1)                         ---------->DOF2                             xxxxxxxxxxxxxxxxx>smallRNA(fl3) ---RAP2.6(2)                     --------->CCA1(2)             --------->AHL20(2)<---------RAP2.6(2) ---ANAC46              <---------------AGL15                 <----------DOF2 <----------DOF2  <----- ----------------TaNAC69(2)  ---------->DOF2        --------->DAG2   ---------->DOF2          ------- --->AtMYB77            --------------->AGL15      ---------->DOF2  <---------AHL20(2)       --------   ttaacagaaggccatttcaacttatgctctaaaaagatagaaagcattgttgataaagccctctctttatataaagagggctttgcgccttcggataaag  3388100       --------->ARR14(2)       <---------MYB52(1)  --------->GLK1(2) --------->ARR14(2) <---------ARR14(2)                            <---------ANAC58 <---------GLK1(2)                        --------->At4g35610 -------->HSFB2a(1)               --------->CCA1(2) -------->HSFC1(2)               <---------ARR14(2)  ================================================ ---------HSFC1(2)               --------->ARR14(2)  --------------->AGL15    --------->TOE2(3) ---------HSFB2a(1)          --------->LBD16   <---------ANAC58               --------->YAB1  <------ ----TOE2(3)            ---------->DOF2   --------->ZAT2                --------->ANAC55(2)------>ZmHOX2a(1) -->DAG2 <---------ARR14(2) <---------ANAC46  <---------At4g35610 <---------ANAC46---------->DOF2 -->DOF2 --------->ARR14(2) --------->ALFIN1  --------->At4g35610<------NtERF2--------->TOE1(3)  <---   gaagattccgatattcgcataggtattgaagcggggatatgaacagctagcttcccctcaaatgggagccgtttaagtaatcttaaaagagtcctcgact  3388200                                      --------->ATHB51                                      <---------ICU4                                   --------->TOE2(3)                                  <-------TEIL                                 <------ZmHOX2a(2)                                --------->ARR14(2)                                <---------ARR11(3)                                <---------ARR14(2)                                --------->AGP1                                --------->ARR11(3)                               --------->GLK1(1)                               <---------GLK1(1)     <----------DOF2                          <---------ANAC46<---------YAB1 --------->WOX13(1)             --------->DAG2 <------NtERF2<---------AHL20(2)              ---------->DOF2 ----------->GT1          <---------ANAC58--------->AHL20(1)          ----------->GT1              -- ===========MADS_MADS     <---------ANAC58--------->AHL20(2)--------->AHL20(2)        <---------ANAC46 -----------AG           <---------LBD16 --------->AHL20(2)<---------ATHB12           ------>ZmHOX2a(1) ------ZAT14---------->DOF2--------->LBD16<---------AHL20(2)--------->YAB1--------->DAG2          ---   gtattggaaaaacaaaaagttcaatatggcgggagatccataattttattgagagctttcaatcaaattagattgtaaagtagtagtcctgtgtaaaaaa  3388300                    --------->ANAC58                    --------->ANAC46                    --------->ANAC58              <---------PCF2            <---------ATERF1(1)           <---------ANAC58           --------->ALFIN1           <---------ANAC46           <---------DEAR3(1)           <---------ANAC58          --------->ATERF1(1)                                          --------->At4g35610         --------->TCP20                                               --------->GLK1(1)         <---------ANAC46                                      <------NtERF2         <---------PCF2                                      <---------DEAR3(1)  <---------HSFB2a(2)        <------NtERF2                                        <---------MYB46(3)  --------->HSFB2a(2)        <---------DEAR3(1)             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <-------TEIL       <---------MYB46(3)      --------->ICU4            <---------HSFB2a(1)  --------->ARR14(2)      --------->ALFIN1    --------->YAB1                 --------->HSFC1(2)   <---------ARR14(2)   --------->ALFIN1 --------->AtLEC2  --------->ALFIN1   --------->HSFB2a(1) <---------GLK1(1) ------->DAG2--------->ATERF1(1) --------->DAG2          <---------HSFC1(2) ------->TEIL ------->DOF2<------NtERF2----------->GT1           --------->ALFIN1 <------ZmHOX2a(1)        <------   aaaagctggtggggcggggtccaagcaagcgtaataaggggagggggactaggggtggaagggtcgtcgaaggagatgcatttctggtacaagtggtatt  3388400                --------->YAB1              <---------KAN4(2)        <---------LBD16        <-----------RAV1(2)      ------>ZmHOX2a(2)     <---------GLK1(1)     <------ZmHOX2a(2)    <-----------ARR10    <---------ARR14(3)    --------->ARR14(3)                                         ----------->GT1    --------->ARR11(3)                             *TSS       --------->DAG2    <---------ARR11(3)                            --------->RAP2.6(3)    <---------AGP1<---------CCA1(2)      <----------DOF2    ---------->DOF2    --------->ARR14(2)       <---------GLK1(1)  ----------->HVH21    <---------ARR14(2)<----------DOF2<----------DOF2      <------ZmHOX2a(1)    <-----------GT1 ------CBF--------->LBD16    --------->GLK1(1)  ----------->TGA1     <---------ATHB12   ggacaagatctcagggaatcatctctttcagatttctgcctttctttcccatgacgactaggaaaaggcaaatcaaaaattttacttcgaattttggacc  3388500                                                                    --------->ARR14(2)                                                                    <---------ARR14(2)                                                                <---------LBD16                                                               --------->ALFIN1                                                              ------->MYC4                                                              <-------PIF5                        ---                                                              --------->TOE1(2)                   ---                                                              <-------MYC3                     <-----                                                              ------->PIF5                     <-----                                                              ------->MYC3                   <-------                                                              ------->MYC2                  ---------                                                              <-------MYC2                  <--------            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <---------ANAC58          --------->ZAT14          <---------At4g35610                                <---------HSFB2a(1)       <---------ZAT14       <---------ZAT2                                <---------AtMYB61----------------->AGL3---------       <---------At4g35610                           --------->ALFIN1 --------->MYB46(3)    ---------      <-----------RAV1(1)      <---------YAB1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ALFIN1      ------>ZmHOX2a(1)   --------->ATHB12  ------->TEIL     --------->HSFB2a(1)     --------->ANAC46    ----------->RAV1(2)  <---------YAB1    --------->MYB52(1)<---------ANAC58     <------ZmHOX2a(2)   tcaacatcctgctgctcatggtgtttcacgattagtattggaaatgaacggagaagtggtggaacgtgcggaaccacatattggatcactccagtgcggc  3388600                    <------NtERF2                    <---------At4g35610                    --------->ATERF1(1)                    --------->At4g35610                   <---------RAP2.3(1)                   <---------ATERF1(1)                   <---------DEAR3(2)                  <---------RAP2.3(3)                  <---------DEAR3(1)                      <------NtERF2       <xxxxxxxxxxxxxxxxxxxxxx                 --------->RAP2.6(3)                     ------>NtERF2        <---------ANAC46        ------>NtERF2                                    --------->LBD16      <---------ANAC58        <---------TGA2(2)                                <-----------HVH21--------->LBD16       ----------->HVH21                                --------->ANAC46 <---------ANAC55(2)     ----------->RAV1(2)                                --------->LBD16  --------->ANAC55(2)     --------->At4g35610                                --------->ANAC58 <---------ANAC58     <---------At4g35610                                --------->ANAC58 <---------ANAC46 ------>ANAC58  <-----------HVH21                <------MYB46(1)         <---------ANAC58 ------>ANAC58------>NtERF2                      <------MYB83           ----------------->AGL1 ----SPL7    --------->DEAR3(1)               <---------ANAC58        --------->GLK1(2) -NtERF2<---------ATERF1(1)                   <---------ANAC58  --------->ALFIN1     --------->ICU4 --RAP2.6(2)<------NtERF2       <---------MYB52(1)     <---------LBD16--------->ARR14(2)     -------- >ZAT14----------->TGA1        ------>NtERF2 --------->ZAT2  <---------DEAR3(1)  <-----------HVH21 -ZAT18--------->WRKY12        <---------At4g35610 --------->PCF5   <---------MYB46(3)      --------- >RAP2.6(3)------>NtERF2 ------>ZmHOX2a(1)   <---------ZAT2<---------ALFIN1   <---------ANAC58    --- >SPL7<----------CDC5 ------>NtERF2<---------STY1(2)   --------->LBD16<---------ARR14(2)   <---------LBD16   acgaagccgctgacgccgagtcggctcctatgccgctagctatgccctgcttggtcccccggcacggtggaggttccgtagcgggtcatgagcaccgggc  3388700                                                              --------->TOE2(3)                                                              <---------MYB59                                                              <---------DAG2                                                            -------->P                                                            ------>MYB83                                                            ------>MYB46(1)                                                           <---------ALFIN1                                   --------->ALFIN1    --------->ZAT18                                  <-------GAMYB       --------->DEAR3(1)                                 --------->MYB55(2)   xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                 <---------DEAR3(2)   ------->GAMYB                                 <---------MYB46(3)  --------->MYB46(3)                                <---------AtMYB61    --------->DEAR3(2)       --------->bZIP60(2)      <---------DEAR3(1)   <---------MYB55(2) xsmallRNA(fl3)                 <---------RAP2.6(2) --------->SPL7                 --------->ALFIN1 ->LBD16<-----------HVH21     ------------>AtMYB77 --------->MYB52(1)        <----------ID1 >DEAR3(1)                 --------->ALFIN1    --------->ANAC58       ----------->RAV1(1) ------>MYB52(1)     ---------->DOF2           --------->ANAC58      --------->REM1(1)           ----   taaggggcgaagtcactcgactgaaaagagaggggcggttgagcaactcaagcgaaccgccctaccttactacaacatagggacagagggggagaaggtt  3388800                                                                                   <---------ANAC58                                                                                ------>ZmHOX2a(1)                                                                               <---------LBD16                                                                            <---------PCF2                                                                            --------->ARR14(2)                                  --------->ATHB12     --------->LBD16      <---------ARR14(2)                           <-----------HVH21         <---------LBD16       --------->ATERF1(1)                           <---------MYB52(1)      <---------ARR14(2)      <------NtERF2               <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->ARR14(2)     <---------MYB46(3)            <---------MYB52(1) <-------GAMYB     ----------->HVH21       <---------ANAC58         <------NtERF2  <---------LBD16         --------->SPL7           <---------ANAC46        <---      ----------------------->TaNAC69(2)     --------->DEAR3(1)          <---------ANAC58        ----      <------NtERF2--------->ANAC46         --------->DEAR3(2)          <------NtERF2  <---------ANAC58    --------->ALFIN1  --------->AtMYB61   <------ZmHOX2a(1)             <---------LBD16<---------ANAC58 <---------AtMYB61 <---------ALFIN1       <---------PCF5              <---------DEAR3(1)  <---------- ------------------->TaNAC69(2)--------->At4g35610<---------ALFIN1  <-------GAMYB  <---------ANAC58 -   gtgaaggtggcctcgttatccacacctccggtcggatgaatggaggaccgcccgacccgggtttcatgagcgttggcgggtcctggagtgcctgtcaagg  3388900                                                                      ----------->RAV1(2)                                                            <-------MYC2 --------->At4g35610                                    --------->At4g35610     ------->MYC3 <---------ZAT2                         <---------ICU4            --------->ALFIN1  <---------ATERF1(1)                         --------->YAB1            <------NtERF2<-----------GT1                        <---------YAB1----------->HVH21     ------->MYC2 --------->ZAT2                      --------->YAB1--------->ANAC58        <-------MYC3 <---------At4g35610              --------->LBD16       <---------At4g35610    <---------ANAC46     <---------ZAT18  <---------ICU4--------->ANAC46  <---------ZAT6 ------>NtERF2    <---------ANAC46 --------->ICU4 --------->ANAC58<---------ANAC46--------->ANAC46 ------ZAT18 --------->LBD16      <---------ALFIN1<---------ZAT14   --------->ANAC58 ----->ZAT18 <---------LBD16  ----------->RAV1(2) --------->ZAT14   --------->ANAC58 -HVH21     <---------LBD16   --------->At4g35610<---------ANAC46  ------->GAMYB                 <--- -------->ATERF1(1)  <---------YAB1------->TEIL <------NtERF2  ----------->HVH21              <------   gcgctagcgcataccccggggtgatcatcatcacctgcacctcacatctcggcgtagtggaacgtgtaacccgcctgctgtctcattcaactacatttgt  3389000  Previous    Next  AGI:  At2g07708.1    Description:  Identical to Uncharacterized mitochondrial protein AtMg00500 [Arabidopsis Thaliana] (GB:P93305); similar to hypothetical protein BrnapMp004 [Brassica napus] (GB:YP_717103.1) Range:  from: 3386848    to: 3388030    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g07709.1    Description:  pseudogene, similar to NADH dehydrogenase, blastp match of 93% identity and 1.1e-175 P-value to GP|485862|emb|CAA52952.1||X75036 NADH dehydrogenase {Triticum aestivum} Range:  from: 3388451    to: 3394513    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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