Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->DAG2                                                                   --------->DAG2         ===========                                                                  ---------->DOF2         ---------->DOF2                                                               <----------ID1         ------>ZmHOX2a(1)                                                               --------->ANAC46      <---------------AGL15                                                         --------->At4g35610         --------------->AGL15                                                      --------->RAP2.6(3)           -----------------                                                     --------->MYB52(1)          <----------DOF2                                                    --------->CCA1(2)           <---------ANAC58    -      <------ZmHOX2a(1)    <----------DOF2          --------->GLK1(1)           <---------ANAC58    <    <---------TOE2(3) <-----------RAV1(2)           <---------GLK1(1)     <---------GLK1(1)         = -------->YAB1    <---------At5g28300              --------->ARR11(3)    <---------ARR14(2)   ------- -At5g28300  --------->ZAT18                       <---------ARR11(3)    --------->ARR14(2)--------->DAG2   aaaaataaggaagagtggattaccgcaggcttttcaaaacaaatacttcaagagatatcggctaaacgaaaaggggatttgtgctttcctcttaaagtag  3357100                          <---------ZAT18                          --------->ZAT18                       ==========================bZIP_DOF                       <---------TGA1a                       --------->TGA1a                       --------->O2                       <---------O2                                                                 -  <------MYB83  <------MYB83                                                      --------->ATHB12  <  <------MYB46(1)<-----------HVH21                                                --------->YAB1    - ================================bZIP_DOF                                     <---------AHL20(2) <--- >AGL3         --------->MYB59                      <---------TOE2(3)         --------->AHL20(2) <--- -------->ALFIN1<------MYB46(1)                    --------->YAB1            <---------ATHB12<------- --------P   --------->ARR14(2)                   --------->ICU4             --------->AHL20(2) <---- ================================MYC_MYB    <---------LBD16          <---------ALFIN1      <---------At4g35610 -->ALFIN1   <---------ARR14(2)       <----------DOF2 <------ZmHOX2a(1)--------->ANAC46<------ZmHOX2a(1)   gggttggaccaagaagataggtcacaagtggccttactctctttgtttcggaatgaggatgggaaggccttccactccaataaatgataggacagctttt  3357200    <---------ALFIN1 -------->ZAT18                    --------->GLK1(2) ---------ZAT18                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <- ----->NtERF2             --------->ANAC58                   ---------->DOF2                   <----- ------ANAC58            --------->GLK1(1)               ---------->DOF2                   <---------DAG2 ------ANAC58--------->LBD16 ----------->RAV1(1)    ---------->DOF2                        <--------- ---DOF2   <---------LBD16--------->ANAC58       <---------HSFB2a(2)               <------ZmHOX2a(1)< -------RAV1(1)         ---------->DOF2          --------->HSFB2a(2)           ---------->DOF2 <-----   ggtgccctactctcgcggaatggaaggaaagccacagaatcaagtttgctactagaaaggaaagaaagagagggagacagagaaaggattccactttagc  3357300   <---------ANAC58   <---------ANAC58  <---------HSFC1(2)  --------->HSFB2a(1)  <---------HSFB2a(1)                       ------>ZmHOX2a(1)  <---------At4g35610                 <---------HSFC1(2)  --------->At4g35610                 --------->HSFC1(2)    <---------ARR14(2)  --------->HSFC1(2)                  <---------HSFB2a(1)   --------->ARR14(2) --------MYB52(1)                     --------->HSFB2a(1)  <------ZmHOX2a(1) ----At4g35610                    ----------->GT1      <---------ANAC46                             < -DOF2  ------>ZmHOX2a(1)     ---------->DOF2 <----------DOF2                                   <---- --------P   ---------->DOF2 <---------WRKY38(1)--------->AHL20(2)   --------->GLK1(1)      <------ZmHOX2a(1) ----ZAT2--------->TOE1(1)   <---------WRKY12 --------------->AGL15  <---------GLK1(1)     --------->ZAT18   tggtagcttcctcgtaaaagggaaaccagagtcaaagggaaacttcctctttatatagcgaggatttgatgaaatcccattttccttcgtaagaggactg  3357400                                                               <---------------AGL15                                                               --------------->AGL15                                                              <-----------------AG                               ---------->DOF2                ----------------->AGL1                           ----------->RAV1(1)                <-----------------AGL1                -                          <---------ETT(1)                    <-----------------AGL2           ------                          <----------ID1                      <-----------------AGL3         ------->MYC3                         --------->DEAR3(2)    --------->GLK1(1)       *TSS    ---------->DOF2 xxxxxx ------ZmHOX2a(1)  --------->AHL20(2)--------->ANAC58         ----------------->AGL2         <-------MYC3 -----ZAT14      <----------DOF2     --------->ANAC58     --------->SPL7   --------->YAB1 <---------ALFIN1   taggaatccaaaacttgctctttatataccgacaaaagtaagaaaccacatttcccttcgtaagaccacatttggaatcaaaaaagccttctccacatgg  3357500                                                                                              -------                                                                                              -------                                                                                  --------->TOE1(2)                                                                                  --------->TOE2(2)      --------->ANAC58                                                          <---------ARR14(2)<--      --------->ANAC58                                                --------->DAG2          <------  ----------->GT1                    <----------DOF2                 ---------->DOF2  <------ZmHOX2a(1) --------->DAG2                <XXXXXXXXXXXXXXXXXXXXMIR399E     ----------->GT1 --------->GLK1(2) <-- --------->DOF2            --------->SPL7                    <---------AtLEC2   --------->ARR14(2)<-- ----->GT1      --------->GLK1(1) <---------ARR11(3)        --------->ZAT2 --------->ANAC58   <------ xxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ARR11(3)        <---------ZAT2 --------->ANAC58  <-------   tgaaaagtaagaaaccacatttcccttcgtaagacaaatcttttttggaaaaatgccttctcagcatggtgaaaagtaagcaaatctaggaaatagagct  3357600     <----------DOF2   <---------ZAT18   <---------ZAT14   --------->ZAT18                                             ------>NtERF2 <---------ZAT18                                              --------->DEAR3(1) --------->ZAT18                                              --------->ANAC46 -->At4g35610                         <---------RVE1(1)       --------->DREB2C(2)                 --- -->ZAT2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->MYB46(3)                  <--- -------ANAC46                        <---------CCA1(1)     <---------ATERF1(1)          ============ ---At4g35610                        --------->ARR11(3)     <---------At5g28300          <-----------RAV1(1) -------ANAC58              --------->REM1(1)              <---------WRKY38(1)       <---------ZAT14 -------ANAC58            <-----------GT1                  <---------WRKY12   ---------->DOF2   ----- ---ZAT2  --------->HSFB2a(2)        <---------ARR11(3)  <-----------HVH21  <---------YAB1      ----- --AGP1   <---------HSFB2a(2)--------->ARR11(3)      --------->MYB52(1)    <---------TOE1(2)   ------   gggtgtgctctacgagaaggcatatgtgttacatcttgagatatttgtttagggcaaacggtcaccgccatttctcgtatgaaaggctggactgtcgcaa  3357700                    --------->KAN4(2)                   --------->KAN4(1)                   --------->HSFB2a(1)                   <---------HSFB2a(1)                   <---------KAN4(1)                   <---------ICU4                  <------ZmHOX2a(2)           ----------->HVH21         ----------->RAV1(2)                                                                       <-         --------->ATERF1(1)                                                                       <-        <---------ATERF1(1)                                       <---------MYB52(1)         --------        ------>NtERF2                                           --------->MYB55(2)           --------       --------->ANAC46                                         --------->MYB52(2)           <------- ------>YAB1     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------MYB46(3)     ---------->DOF2 ------ATHB12    <-----------ARR10     <---------YAB1    <---------ANAC58    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ====================RAV ----------->RAV1(2)---------->DOF2    <-------TEIL  <---------AtLEC2-------- ---->ANAC58   --------->LBD16       <----------DOF2     <---------ANAC58   <-------TEIL  ----------- ---->ANAC58--------->MYB52(1) --------->STY1(2)      <----------DOF2   <---------KAN4(2)--------->DAG2 --->WOX13(1)<---------LBD16   <---------STY1(2)<---------GLK1(2)<-------GAMYB    <---------YAB1  <--   tcaaactctccgcctgccggatcattcccctgtagctagctttgattaaagagtctctttcttggttcgttgggaatgtgcatgatgagaaaaggtagtt  3357800        <---------ANAC58        <---------ANAC58        <---------ANAC46   <---------At4g35610   --------->At4g35610  <---------ARR14(2)  --------->ARR14(2) --------ANAC58         <---------ANAC58 --------ANAC58         <---------ANAC58                                                        ----- ->MYB46(2)             <---------AtLEC2                                                ------>ZmHOX2a(1) ->MYB111(1)        <---------ANAC46                                             --------->MYB52(2) --MYB46(3)         <---------ANAC58                                           <---------MYB52(1) ->MYB111(2)---------->ID1                           <---------ANAC46    --------->ANAC58       <---- ->MYB.PH3(2)   <----------DOF2               <---------MYB52(1)         --------->ANAC58 <---------DEAR3(1) -------At4g35610   <---------ANAC58      ------>ZmHOX2a(1)              --------->ANAC46--------->SPL7   agcttatctgccttgttcctttgcttgcatgaagaaagactctcctctgtttgttttgtgggaataggcatgactaagccagttagtttcctacggcgag  3357900                                                                                      <------NtERF2                                                                                     ------>NtERF2                                                                                     <------NtERF2                                                                                     <---------ATERF1(1)                                                                                    --------->RAP2.6(2)                                                                                    --------->RAP2.3(3)                                                                            --------->ALFIN1                                                                         <---------TOE1(3)                                                                         <---------TOE2(3)                                     --------->ANAC58                    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <---------AtLEC2                           --------->DAG2                       <---------ARR11(3)                            <----------DOF2--------->RAP2.3(2)                <---------ANAC58     --------->ANAC58               ----------------->AGL1       ----       <----------DOF2 --------->ARR11(3) --------->ANAC46         ------>NtERF2    --------->DEAR3(1)     --------->At4g35610  <----------DOF2 --------->ANAC58       --------->LBD16   --------->ATERF1(1)     --------->ZAT2   <---------GLK1(1)   --------->ANAC58   <---------ARR14(2)    --------->RAP2.3(1)  <---------At4g35610 <---------CCA1(2)  <---------LBD16     --------->ARR14(2)    --------->DEAR4(2) ---->ZAT2      <---------ANAC58   <---------bZIP60(2)    --------->HSFB2a(2)      <---------RAP2.6(2) -----ZAT2      <---------ANAC46----------->HVH21         <---------HSFB2a(2)     <---------ATERF1(1)   ctcgagcagctttgtattgcgtcgatatctttccatgacatgccccgctatctatgtttactggaaccgggccttaaggtgaagggccgcctctctaaga  3358000  Previous    Next  AGI:  At2g07697.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.9e-23 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus) Range:  from: 3354011    to: 3357471    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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