Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <---------ALFIN1                            ------>ZmHOX2a(1) <---------ARR11(3)                          ------>ZmHOX2a(2)   <-----------ARR10                        --------->ARR14(2)    --------->GLK1(2)              <---------WOX13(1)        ----------------------->TaNAC69(2)           <---------YAB1<------ZmHOX2a(2)    --------->ARR11(3)    --------->ANAC58    <---------ARR11(3)    <---------ARR14(2)         ------>ZmHOX2a(1)    --------->ANAC46    <---------ARR14(2)    --------->ARR14(2)     --------->ARR14(2)    --------->ANAC58    <---------GLK1(2)--------->At4g35610         <---------ARR14(2) ------->ANAC46 --------->YAB1         --------->ZAT18       <-----------HVH21     <---------ALFIN1   taccccaagtaatctcattgatactggatcctctcttgaagtgagcaaaatctgcacatctctagtcagaggttcctccattacccctccctcattagcc  3527000                              <---------ZAT2                              --------->At4g35610                              <---------At4g35610                              --------->ZAT2                        --------->ZAT14                      --------->ANAC46                                                          <----                    <---------ALFIN1                                                           <-----                    --------->ZAT6                                --------->ANAC58             ------                 <---------WRKY12                                 --------->ANAC58             <-----                 <---------WRKY38(1)                              --------->ANAC46     ------->TEIL                --------->WRKY18(1)<----------DOF2        <---------WOX13(1)       --------------->AtSPL8         --------->WOX13(1) --------->MYB46(3)          --------->ATHB12  ---------->DOF2--------->TOE2(3)   tccctcattttcaatccagtcaacacttcaccagctgctttctcaaactacaattcaaagattgactcactcaatacaaagcttatatgaaccctaattt  3527100                                                                                         --------->ZAT18                                                           =======================HOX2a_HOX2a                                                 <------ZmHOX2a(1)                      --------->ALFIN1                                                 =====================================HOX2a_HOX2a                                               <---------TOE2(3)                    <---------HSFB2a(2)                                        ================HOX2a_HOX2a             ------>ZmHOX2a(2)                                        ------>ZmHOX2a(2)  ------>ZmHOX2a(2)   <------ZmHOX2a(2)                                      --------->ARR14(2)  <------ZmHOX2a(2)   --------->AGP1                                      <---------ARR14(2) <---------ARR14(2)   --------->ARR14(2)                                  <---------At4g35610   <---------GLK1(1)     <---------ARR14(3)                                  --------->At4g35610  ----------->ARR10      <---------ARR14(2)                                ===============HOX2a_HOX2a========================HOX2a_HOX2a                                =================================HOX2a_HOX2a  <---------ARR11(3)                                ==============HOX2a_HOX2a--------->ARR14(2)   --------->ARR14(3)                                <------ZmHOX2a(1)================HOX2a_HOX2a  --------->ARR11(3)                                ==================================HOX2a_HOX2a--------->GLK1(1) -----AHL20(2)                 --------->At4g35610--------->ALFIN1---------->DOF2   --------->HSFB2a(2) ----AHL20(1)                <-----------RAV1(2) =================HOX2a_HOX2a<---------GLK1(1) --->AHL20(2)        <---------ARR11(3)<------ZmHOX2a(2)--------->GLK1(1)   ----------->ARR10 ----AHL20(2)        --------->ARR11(3)=================HOX2a_HOX2a        <------ZmHOX2a(1)     ----   tttttgaagtcataccacagggagataatcggcaggagcagatcggattaaggaggggagatcggaatcaaaggagaggagatcttcgaggtggacaaca  3527200                                                                                                -----                                                                           ------>ZmHOX2a(1)  -------                                                                      <---------GLK1(1)       <------                                                           --------->HSFC1(2)      ----------->GT1                             <---------ZAT14               <---------HSFB2a(1)     <------MYB83 <----                             --------->ZAT14               <---------HSFC1(2)      <------MYB46(1) --                     <---------At4g35610              --------->HSFB2a(2) --------->TOE1(3)   <------                    --------->ARR11(3)                <---------HSFB2a(2) --------->TOE2(3)   <------                    <---------ARR11(3)               =============================HOX2a_HOX2a<------NtERF2      <---------TOE1(3)   --------------->AGL15      ------>ZmHOX2a(2)--------->GLK1(1)    <---------DEAR3(1) ----->ANAC46    <------ZmHOX2a(1)        --------->GLK1(2)--------->HSFB2a(1)    --------->MYB59  <-   agtcgcttagggttatcgaggagagcttctctgtaggggaaacaattctgttcgatctcgaagtttcgaatgaattccttaaatttggttaagacggcgt  3527300                             --------->HSFB2a(2)                      ------>NtERF2                  --------->ARR14(2)                  <---------ARR14(2)                 <------NtERF2                 --------->ATERF1(1)                ------>NtERF2--------->LBD16                <---------ATERF1(1)                <-----------HVH21               <---------DEAR3(1)               --------->DEAR3(1)               <---------ANAC58               --------->At4g35610               <---------ANAC58           <------MYB83               <---------ANAC46          <---------MYB46(3)              <------NtERF2  <---------HSFB2a(2) <---------ZAT14              ------>NtERF2 --------->HSFB2a(2)  --------->ZAT14              --------->ATERF1(1)     ------>NtERF2             <---------RRTF1(1)       <---------RAP2.3(1)            <---------DEAR3(1)       <---------RAP2.6(2)        <-------GAMYB --------->LBD16<---------RAP2.3(2)       <---------MYB46(3)<---------SPL7<---------ZAT2      <---------YAB1<---------LBD16  <---------DEAR3(1)      <---------AtMYB61------>NtERF2<---------LBD16                            <---------bZIP60(1)   ----------->HVH21--------->ATERF1(1)<---------At4g35610                     --------->bZIP60(1) ---->ALFIN1<---------RAP2.6(2)    <-----------RAV1(1)                        <<<<<<<GRF7 -->ALFIN1  <---------ANAC46<---------LBD16  <---------DEAR3(1)             ------>ZmHOX2a(1) ---ANAC58  <---------RRTF1(2)   <---------GLK1(1)                          ----------->HVH21     <-- --NtERF2   <---------RAP2.3(3)  --------->At4g35610                ---------->ID1     <---------ANAC58 ------->ZAT18--------->RAP2.3(1)<---------At4g35610               <-----------HVH21   <---------ANAC58 ---ANAC46  <---------RAP2.3(2) <---------ARR14(2)    <---------ZAT14     ----------->RAV1(2)    <--- ---ANAC58 <---------LBD16 <---------LBD16<------MYB46(1)       ------>ZmHOX2a(1)   <---------MYB52(1) --------PCF2<---------RAP2.3(1)--------->ARR14(2)    --------->ZAT14     <---------ICU4        -----   ggggactgatggttgcggcgtctccggcctccgggaactgcggctggtcgctgtagtaaactgctccttcgtcccatcctgacatcgttgcttcgtctcc  3527400                                                                                                 ----                                                                                              <------NtERF2                                                                                             --------        <-----------GT1                                              <---------DAG2         <--------    ------->TEIL                                                     <----------DOF2        >>>>>>>>> --------->ANAC55(2)                                         <------NtERF2                 <<<<<<<<<E2Fd <---------ANAC55(2)             --------->DAG2             ------>NtERF2                  <---------LBD16 -------MYB52(1)             --------->YAB1                <---------PCF2                  <<<<<<<<<E2Fc ----GAMYB                  <---------YAB1               <---------MYB46(3) --------->ETT(2)<-------- ---->ANAC46     <----------DOF2---------->DOF2*TSS     --------->ALFIN1    <---------ETT(2)<--------   gttacgaatttctctatctctttctctcttatcaaaaagttctaaacgaagagagagagtgggggcaagggctttatgtcgactatgagttttggcggga  3527500                                                               --------->ATHB12       --------->LBD16                                       <-------GAMYB      <---------ANAC58                                      --------->MYB52(2)      <---------ANAC46                                      <---------MYB46(3)     <---------LBD16                                        <------MYB83   --------->ALFIN1                                         <------MYB46(1) <-----------RAV1(1)            <---------ARR11(3)         <---------TOE2(2)                     ---- -------->CBF              --------->TOE1(2)               <---------TOE1(2)                    <---- ->LBD16                  --------->ANAC58              <---------ANAC58              <----------DOF2 -ANAC58                  --------->ANAC58           <---------GLK1(1)              ---------->ID1 >E2Fa<---------ANAC58   ------->TEIL        <--------P <---------ANAC58        <----------DOF2 <---- -ANAC46               <---------SPL7      ----------->GT1<---------MYB52(1)<----------DOF2 --------- -ANAC58<------NtERF2  <------NtERF2      ----------->GT1<-------GAMYB  <----------DOF2     <--------   acaatgtggcgggaaactgatgggccgaacccaagacctatggacgggtaaatggatttcgttggttattgggtctttctttctttttctttttagctaa  3527600                                                           <---------ATHB51                                                           <---------YAB1                                                           --------->ICU4                                                        <---------YAB1                    <---------YAB1                                          --------->MYB52(1)-------->HAHB4         <---------AHL20(2)                                          ------>MYB46(1)--------->YAB1         --------->YAB1                                <---------YAB1          <---------AHL20(2)      --------->TOE1(3)                              --------->YAB1            --------->AHL20(2)      --------->TOE2(3)          <-----------GT1    <---------YAB1            --------->AHL20(1)     --------->GLK1(2) ------->GT1              --------->AHL20(1)           <---------AHL20(1)    <---------GLK1(2) -----TOE2(3)             <---------AHL20(1)        --------->AHL20(2)   --------->HSFB2a(2) -----TOE1(3)             <---------AHL20(2)      --------->AHL20(2) --------->REM1(1) <---------AHL20(2) >At4g35610               --------->AHL20(2) ----------->GT1<---------ICU4  <------ZmHOX2a(1) -At4g35610        <-----------GT1        ------>MYB83 --------->AHL20(2)<---------HSFB2a(2)   ggttacattttttatccattttttctaatttattataaaaaaccaaacagataaaaatataattatggactacatctaggaatcttaaatttatgaattg  3527700                                                                                                    <                                                                                                    -                                                                                                  <--                                                                                          <---------TOE1(3)                                          --------->ANAC58                                <---------TOE2(3)                       <---------At4g35610--------->ANAC58                     <---------ANAC55(2)---       <---------GLK1(2)         --------->ARR11(3)        --------->YAB1  <-----------HVH21     ----   cacattttagaatttcatatttttaagctacttaatatcgttgtaagcattttcaattccatcgtaattttcttcaatgtcacttaaaatttaaggctat  3527800                                                          ----------->GT1         ----------->GT1                     <--------ATHB1   <---------AHL20(1)                        --------->ATHB51   --------->AHL20(1)                        --------->AHL20(2) ---------AHL20(2)                           <---------AHL20(2)       ---------->DOF2  -------->P -------->AHL20(2)                           <---------ICU4        --------->YAB1     <-----------GT1 -------AHL20(2)                            --------->ICU4<---------ANAC55(2)         --------->WOX13(1) ------>AHL20(2)                          --------->YAB1  --------->ANAC55(2)----------->GT1        - ----->YAB1   ---------->DOF2          --------->TOE2(3)--------->AHL20(2) ---------->DOF2      <----   attaatatatatgtttaaaagaatagtttttagttttataacattaataatttgaaaattaagtaactataaaaaagaaaagaaaaatcaaccatatata  3527900  Previous    Next  AGI:  At2g07690.1    Description:  minichromosome maintenance family protein / MCM family protein. similar to DNA replication licensing factor, putative [Arabidopsis thaliana] (TAIR:AT2G16440.1); similar to hypothetical protein OsI_009102 [Oryza sativa (indica cultivar-group)] (GB:EAY87869.1); similar to hypothetical protein OsJ_008431 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24948.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67715.1); contains InterPro domain MCM protein 5; (InterPro:IPR008048); contains InterPro domain MCM; (InterPro:IPR001208); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucl Range:  from: 3523160    to: 3527447    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version