Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <----------DOF2        <---------HSFB2a(1)            <---------ARR11(3)        --------->HSFB2a(1)            --------->ARR11(3)        --------->HSFC1(2)            <---------CCA1(2)                     ---------->DOF2 ----->DOF2               <---------At4g35610     --------->TOE2(3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ->GT1  <---------HSFC1(2)--------->At4g35610  <----------DOF2    <-----------GT1              <-----   aagctagggaaatttctgttcaagtttcagcttgatagctatatctttcctttcttaactgggttttttaacttcacatatagcccatcagcttgtgact  3307500                                                                              ----------->ARR10                                                                   <---------ANAC58                                                                   <---------ANAC58                                                                  <---------At4g35610                                                                <--------P  <--------P                                                          ---------->DOF2 <---------MYB46(3)                                                       --------->AHL20(2) ----------->GT1                                                       --------->YAB1  --------->ZAT2                                 <---------ARR14(2)   <---------YAB1   --------->At4g35610               --------->HSFB2a(2)          --------->TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ALFIN1               --------->ARR14(2)--------->AHL20(2)  <---------At4g35610 <---------ZAT18                <---------ZAT14  --------->TOE2(3)--------->At4g35610 ----bZIP60(2)----------------->AGL1     <----------DOF2 <---------YAB1<---------ZAT2     -----------   tcgcacactctcagtttcgagattgggaatcgacagaactgccctttcttaacttaattataaagggtagcttagctggttagatttactgaaggtaatt  3307600                                   ------>ZmHOX2a(2)                                  <------ZmHOX2a(2)                                 --------->ARR11(3)                                 <---------ARR11(3)                                 --------->ARR14(2)                                 <---------ARR14(2)                         <---------HSFB2a(2)                         --------->HSFC1(1)                                                   <------                         --------->HSFB2a(2)                                                  <------                         <---------HSFC1(1)    <---------ZAT2                                 -------                    <---------ANAC58           <---------At4g35610                           <-------               --------->YAB1   --------->GLK1(1)                                    --------->LBD16              <---------YAB1    <---------GLK1(1)               --------->LBD16     <---------LBD16            --------->YAB1     ----------->ARR10  ----------->GT1                <xxxxxxxxxxxxxxxxxxx    ----------->HVH21<----------DOF2           --------->ZAT2  --------->LBD16 ----------->HVH21 >GT1  ------->TEIL <---------ANAC58 ------>ZmHOX2a(1)        --------------->AGL15----------->RAV1(2)   caatcgctgaacgttgataatagctttcgagaagagatccttactctccagctagttaaaacttccccgattagtaatgctctcaccctggggacatatc  3307700         --------->At4g35610         <---------At4g35610     <-----------HVH21  <----------DOF2                                                  <---------ETT(2)          <------- -----ARR10                                                        ----------->HVH21     <----------DOF2 ---ARR11(3)                                               <----------DOF2 <---------bZIP60(1) -->ARR11(3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-----------HVH21<------- --CCA1(2)             <---------HSFC1(2)           ------>ZmHOX2a(1)      --------->bZIP60(1)      - xxxxsmallRNA(si3)     --------->HSFC1(2)    <---------ALFIN1   <---------ZAT6          <---------ICU4   tcacctttgtcagcaaaacagtagaaccatcttcatttctcagtctcacacttcctattccctttactgttgacatggtgtcatttgccatctttacttg  3307800                                                                                           --------->TOE2(3)                                                      --------->TOE2(2)                 <---------GLK1(1)           <---------At4g35610                       ----------->RAV1(2)                --------->GLK1(1)           --------->At4g35610                      -------->P   <---------ARR14(2)    <---------GLK1(1)       --------->ANAC46                           --------->MYB46(3)          <----------DOF2  <-----    --------->MYB52(1)                      ---------->DOF2      --------->ARR14(2)   <------ZmHOX2a(1) --ANAC58 --------->GLK1(2)                --------->LBD16<-----------HVH21   <---------MYB52(1) --ANAC58<---------GLK1(2)                <---------HSFB2a(2) <---------ANAC55(2)   --------->MYB59-- -------->ZAT6            --------->ANAC46--------->HSFB2a(2) --------->ANAC55(2) <<<<<<<<<MYB98<----   tttcactaccagcatctgataaacttacaaaccattctcttcttccgaaagaacaacctgtgtcaagtatccagacttccctttgttaggaatccctaat  3307900                            ---------->DOF2                         ----------->TBP                 --------->ZAT6                   --------->ATHB12                 --------->REM1(1)                <---------ICU4                -------->P <---------AHL20(2) <---------ALFIN1                ------>MYB46(1)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------CBF     ------>MYB83xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------->DOF2--------->AtMYB61        *TSS  --------->ZAT14                                  ------- -----WOX13(1)<---------MYB59   <------ZmHOX2a(1)<---------ATHB12                    --------->ZAT6   tgaaagtgagaagggacctacactagtatataaaggacatgggcctctccactcattgccaattggtttttagttggaagcccatgaacactcacatggt  3308000                                                                                            <--------                                                                                     ------>ZmHOX2a(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <------ZmHOX2a(2)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <-----------GT1              --------->MYB52(1)             --------->HSFB2a(1)                    --------->YAB1                ------->GAMYB<-----             <---------HSFC1(2)               <---------ARR11(3)                 --------->MYB46(3)             <---------HSFB2a(1) <----------DOF2   <---------ICU4              --------->MYB52(1) ---->GT1  <---------ANAC46      ------>ZmHOX2a(1)--------->ICU4            --------->ANAC46---------   atcaagagccatggagggttctcttaagtcttatccttttccttccaatatcaatattactagttgtgtctccattaaactcaacgatcggaactatctt  3308100                                                                                                 ----                                                                                                 <---                                                                                                 ----  <----------ID1                                                            ----------->GT1      <---  --------->ANAC46           <---------ZAT2                   <----------DOF2                 ------- -ARR11(3)                   --------->At4g35610             <---------ANAC58        <-----------GT1 -----DOF2                   <---------At4g35610             <---------ANAC58       <-----------GT1 >ARR11(3)                 --------->ZAT18        ----------->HVH21<----------DOF2 <---------AHL20(2)   ttatacgacgaaggaagggtgcgattgagtctgctgaacttgggcgagagatgtgacttcgttcctttcctttcagtcgagttatttaaacctctccaga  3308200                                                                              --------->ANAC58           --------->HSFB2a(2)                <---------ARR14(2)              --------->ANAC58    <---------ANAC46                          <---------MYB52(1)   --------->ARR14(2) ----->GLK1(1)                                --------->ARR14(2)   --------->GLK1(2) ------ZAT14       <-------TEIL           <---------At4g35610      <---------ARR14(2) ----->ZAT14    <---------HSFC1(2)     <------ZmHOX2a(1)          <---------GLK1(2) ------GLK1(1)  --------->HSFC1(2)   <---------TOE2(3)  <----------DOF2      --------->DAG2 -->LBD16  <---------HSFB2a(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    ---------->DOF2    <-----   gctctggtgtctacgagaagcttcatgagtcaaacaattgaggaagccgatacttatactttggtagagaatctcgcataaagcaatgggagtcatggct  3308300                             <---------ICU4                                             ----------->HVH21                             --------->YAB1                                           <---------ANAC58                 --------->ANAC46                                                     <---------ANAC58                 --------->ANAC58          --------->ANAC58                   xxxxxxxxxxxxxxxxxxxxxxx                 --------->ANAC58        <---------ICU4                      --------->ARR11(3)        ------>ZmHOX2a(2)   <---------ATHB12           --------->At4g35610   <---------ARR11(3)     --------->ATHB12       --------->ICU4 --------->ANAC58                  --------->AHL20(1)    <---------YAB1----------->GT1 ------->TEIL         <---------At4g35610   <---------AHL20(1)    -- ----ANAC46   <---------REM1(2)<---------YAB1   --------->AtLEC2           ----------->ARR10  -------   cggattatgatcggactacaaggaaaaacaatgatgaatctcatcatgccatccaagagctgaatgcaaaaatggataagatattgaagcgtgaccaaaa  3308400  Previous    Next  AGI:  At2g07685.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 8.2e-13 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 3307939    to: 3309228    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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