Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <----------DOF2                                            <------MYB83    ------>ZmHOX2a(1)                                            <---------MYB46(3) <<<<<<<ZML2                                            <------MYB46(1) --------->HSFC1(1)        <----------DOF2                    <---------AtMYB61<---------HSFC1(1) <---------GLK1(1)         ---------->ID1 <--------P        <---------HSFB2a(2) --------->GLK1(1)  <---------ALFIN1  <-----------RAV1(2)   --------->HSFB2a(2)   ctgaattctgcttttaagtggctcacctcgtcgtcttctatcaggttggtttgatatgtctcctagaacccttttcttagttctattagtatttgaattc  3206600                                                                         --------->ANAC55(2)                                                                         <---------ANAC55(2)                            <---------AHL20(2)                         <-----------GT1                           <---------YAB1                              --------->AHL20(2)      ------                           <---------WOX13(1) ---------->DOF2    ----------->GT1      <---------TOE2(3)   aatttcagtgtatcaagtttagaaacctgattaatggaatctaacaaaaaaagaacatagatttagagtgtaattacatattagaattaagatgaataaa  3206700                                                          <---------ANAC46                                                          --------->ETT(1)                                            --------->GLK1(2)                                      <-                                           <---------GLK1(2)                                       <-                             <---------MYB52(2)        <-----------RAV1(1)                         <-  ---------->DOF2         <---------GLK1(2)--------->ARR14(2)                               <-------- ---->DOF2           --------->MYB52(1)    <---------ARR14(2)       <---------HSFB2a(1)     <--------   agctcaaagtcagaaactatagcaaacagaaactcacgtttagtagattctcttcttatgtcggataagaaggtttgtgaaccaagttcagaataagatt  3206800                                                                        <---------YAB1                                                                      --------->YAB1      <---------YAB1                                                  <---------ICU4 --------ANAC58                                --------->At4g35610   --------->ICU4 --------ANAC58                                <---------At4g35610<---------AHL20(2) --------ANAC46   <---------YAB1      --------->ZAT18             --------->AHL20(2)          <------ -YAB1----------->HVH21            <-------GAMYB                --------->ANAC55(2)        --------->YAB1 -TOE2(3)     <----------DOF2     <-----------RAV1(1)           --------->ANAC46----------->GT1   ggcttattctgacagtctttatatttggatgattttctgttgcactgtatgctgaaaacagaatataagtaattatgttagaatgaaaaacaatagtatc  3206900                                   <---------ATHB12                            <---------ETT(2)                          --------->REM1(2)                             *TSS                         <---------REM1(1)                        <---------WOX13(1)                         --------->ALFIN1                       --------->ATHB12               <-----                       <---------ANAC46                      <---------At4g35610     --------->At4g35610                       <---------ANAC58           >>>>>>>>>ARR2<---------YAB1        <---------At4g35610                       <---------ANAC58         <---------YAB1------>ZmHOX2a(2)      --------->ZAT2<- -----ARR10       --------->DAG2   <---------ATHB51<---------WOX13(1)<---------TOE2(3)  ------>NtERF2   taaacaaaactcatatacaaaaattgggtgtagacaaataatgctcacatttgattgtttctgatctgattgaagttagaaaatcgttgctgccaagtat  3207000              <---------WOX13(1)                                                     ------>ZmHOX2a(2)             <------------CBF                                                      <---------ARR11(3)            --------->ATHB12                                                       <---------ARR14(2)           --------->AHL20(2)                ----------->GT1                    <---------TOE2(3)   --------->WRKY12                   --------->WOX13(1)                    --------->YAB1   --------->WRKY38(1)               ------>ZmHOX2a(2)                 <-------TEIL--------->ARR11(3) -------CBF<---------AHL20(2)  <---------ICU4<---------MYB46(3)<---------ARR14(2)  --------->ARR14(2) --------TOE2(3)----------->GT1<------------CBF                --------->ARR14(2) <------ZmHOX2a(1)   tgaagttgactgtttaattggtatatcagataatattgatccatcagttgttaaacattcaagaggttctacatacatttataaggatcgttttgagcat  3207100                                                                <---------AHL20(1)                                                   <---------HSFB2a(2) ------>ZmHOX2a(1)           <-                                                   --------->HSFB2a(2) --------->LBD16           ----                --------->AHL20(2)               --------->MYB52(1)   <---------LBD16         <------               <---------ATHB12           <------ZmHOX2a(2)     --------->ARR11(3)            <------           --------->MYB46(3)             ====================================HOX2a_HOX2a     <------         <-----------GT1                --------->WOX13(1)   <---------AHL20(2)               <------   <---------YAB1      ----------->GT1 <---------ETT(2)      --------->AHL20(2)               -------   aagttatgttttaaccaataaaacattgtaaaaatagtatgtcgatcaacataccagaagaatttatatattcctggcattgagagacattagatggcgt  3207200                                                  --------->ZAT6                                          <---------WOX13(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->YAB1 --------WOX13(1)                       --------->ATHB12 ----->ATHB12                           -------->ATHB1 ---ANAC58                              <---------ICU4 ---ANAC55(2)                           <--------ATHB1                                         ------ ---ANAC58                             --------->ICU4                                          ------ ---ANAC46        --------->GLK1(2)    <---------YAB1              --------->CCA1(2)           <----- -->ANAC55(2)---------->DOF2           <---------ATHB12     --------->ALFIN1              -----------   aattggcacagagcataaagaatatggttcttgagaagacaatgattgtctaacacaaacaggtgttagatatgagttctcatcaattgagcctgaaaaa  3207300                ----------->RAV1(1)             --------->ANAC58                                                             -----------           <---------MYB52(2)                                                            ------------         ----------->RAV1(1)                  --------->AHL20(2)                       <-----------GT1      --------->ANAC58                       <---------YAB1                            <<<<<<<<<GT-1 --->AHL20(2)--------->ANAC58               --------->AHL20(2)           --------->HSFB2a(2)      <-- --->ICU4--------->RAP2.6(2)       ---------->DOF2              <-----------GT1    --------->ATHB12 ----AHL20(2)--------->ANAC46 --------->RVE1(1)<---------AHL20(2)        <---------HSFB2a(2)     ---- >GT1 --------->ANAC58--------->YAB1      --------->ICU4       <-----------GT1    --------->ICU4 ----   attaagagaagccacaaacaacattgatgaaaatatcgaaagtcaatattatatagaactatattttagcctcttcgagagagaatgatttacctatatc  3207400         --------->ARR11(3)         <---------ARR11(3)         <---------GLK1(2)                              <---------GLK1(2)      <---------WOX13(1)          --------->HSFC1(2)    <---------ARR11(3)              ---------->DOF2 ---->AGL15               ---------->DOF2               --------->ARR11(3)         ------>NtERF2 ----->AGL1        --------->MYB52(1)        ----------->RAV1(1)                  --------->LBD16 ---------HVH21    ---------->DOF2<---------HSFC1(2)  ----------->ARR10       <---------DEAR3(1) ----->ANAC46   --------->At4g35610    <---------HSFB2a(2)                   ------->TEIL ----->WOX13(1) <---------At4g35610    --------->HSFB2a(2)       <---------YAB1 <---------LBD16   agtcactgatagatttttagctaaaggagaaagagacccttctaaaaccacagaagtagattttgttatgtttgatatggaccgcgggcataaagagtat  3207500  Previous    Next  AGI:  At2g07620.1    Description:  transposable element gene. pseudogene, similar to putative helicase, very low similarity to SP|Q9UUA2 DNA repair and recombination protein pif1, mitochondrial precursor {Schizosaccharomyces pombe}; blastp match of 39% identity and 1.0e-243 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)} Range:  from: 3200463    to: 3206972    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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