Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->YAB1                        <---------YAB1                       <---------TOE2(2)                     <---------SPL7                    <---------ANAC58         <---------ANAC58                    <---------ANAC58         <---------ANAC46                               <------NtERF2                    --------->ANAC55(2)      <---------ANAC58                              --------->LBD16                    <---------ANAC55(1)      ----------->GT1                              --------->ANAC46 <------ZmHOX2a(1)  <---------O2  <---------KAN4(1)                <------ZmHOX2a(1)      --------->RAP2.6(2) ----ZmHOX2a(1)     <---------ANAC55(2)      <---------ANAC55(2)  ----------->GT1        <---------LBD16 -ZmHOX2a(1)        <---------TGA1a     <---------------AGL15    ----------->GT1       xxxxxxxxxxxxxx -HSFB2a(2)         <---------ANAC46    ------>ZmHOX2a(1)      <---------ZAT2         <---------GLK1(1) >HSFB2a(2)       <---------TGA2(2)--------->KAN4(2)           --------->ZAT2        --------->ARR14(2) -HSFC1(1)       ----------->TGA1 <----------TaMYB80       --------->ANAC46          <---------ARR14(2) >HSFC1(1)       ----------->HVH21--------->KAN4(1)       <---------LBD16       <---------ANAC46   ggaggaccattttcaaattgtgacgtatgatactgaatattcctatttcgtgaaaatttatacggagcaggaaaattttgttttgtggatagccggaatc  3117300                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                               <---------ANAC58                                     -                                         --------->ATHB12                                           <                           ----------->GT1     <---------ANAC58                            ----------                         ---------->DOF2 -------->ATHB1                                    <---------ANAC58                <-------GAMYB            <---------ICU4                                    <---------ANAC58               <---------MYB46(3)        --------->YAB1                             <-------GAMYB xxx               <-----------RAV1(1)      <---------YAB1                             <---------MYB46(3) xxxxxxxx>smallRNA(fl3)<------NtERF2   --------->GLK1(2)                           <-----------RAV1(1)   aactacataatagttgtctgttggaggcaaagaaaattcagaatcattgtcttgctccattgtgaatcaactacataatagttgtctgttgtatcgtgac  3117400               <---------ATHB12 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------ARR14(3) -------->GLK1(2) -------->ARR11(3) ---------ARR11(3) -------->ARR14(3)                                                       <------ZmHOX2a(2) -----------ARR10            --------->ANAC46                           <---------ARR14(2)       ---- ->GT1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     --------->YAB1--------->DDF1            <-----   aaaatcttggtgctccaatccatacatgttcaaaccacatattgccataacattgaataatgttctcccatgtcgatcccaatacattctttgtaattca  3117500                <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 <---------YAB1     --------->TOE2(3)                            --------->AHL20(2)          <-----------GT1<-------     <---------DAG2  ------->TEIL            xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i)     --------->TOE1(3)                     <---------ARR14(2)   <---------AHL20(1)           --------    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ARR14(2)   <---------ARR11(3)    xxxxxxxxxxxxxxx  <-----------GT1    --------->GLK1(1)  --------->MYB46(3)      --------->ARR11(3)  xxxxxxxxxxxxxxxx>smallRNA(i) ----->ANAC55(2)--------->YAB1        ----------->RAV1(1)      <---------CCA1(2)   <---------ATHB12<- ------GT1--------->ZAT6             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----------->GT1 <------ZmHOX2a(1)   cgtttcaccttaacacaaacatgaactccatccattgctccaacaaatccactaaaatatgaccaatatctttggtctagttacaatcgttcaggaattc  3117600                                          <---------MYB52(2)                                         --------->ANAC58                                         --------->ANAC58                                     --------->ANAC46                                     --------->ANAC58                 --------->AHL20(2)      <---------ANAC58               --------->ANAC58                 *TSS      <---------ANAC58         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------AHL20(1)    --------->ARR11(3)        <---------ICU4           <---------MYB46(3)  ----------->ARR10          <---------AHL20(2)      <---------At4g35610 <------NtERF2               --------->AHL20(2)     ------->TEIL      <---------AHL20(2) --GLK1(1)                   <---------YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------At5g28300 ->GLK1(1)               --------->AHL20(2) <-----------GT1  <------ZmHOX2a(1)    <-----------GT1 x>smallRNA(i)         <----------DOF2   ----------->GT1 <---------MYB52(1)   <----------DOF2 --------ANAC46      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->MYB59<-----------GT1 <----------   ggcgtagttcttgccttcttggagtctttatataattacaagcaagtaactatgtagctgttaggacctcaaaaaatttcctttttactgtctattgatt  3117700                                                                                             --------                                                                                  <---------ANAC58                                                                                  <-------GAMYB                                                                                  <---------ANAC46                                                                                  <---------ANAC58                                                                                 <---------MYB46(3)                                                                                 <------MYB83<-------                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <------------CBF         <------------CBF       --------->MYB52(2)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <-----------RAV1(1)                                xxxxxxxxxxxxxxxx>smallRNA(s) <-----------HVH21   --------->MYB55(2)                       <----------DOF2              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxx                  --------->ARR11(3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->YAB1                  <---------ARR11(3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->TOE2(3)                 <---------CCA1(2)           --------->GLK1(1) <-----------GT1  <---------AtMYB61 --CBF  ------------>CBF   <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<------MYB46(1)    <   ttgtccaaatcgcaatctaatatctctttaaacttcattgtgaccacaaatccatagaaacattgtcaccctctcttcgatgttggttgtgaaccataat  3117800                                                                                         <xxxxxxxxxxx                                                                                       ------>NtERF2                                                                                      --------->ANAC46                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                             --------->ANAC58      --------->ANAC46                                                             --------->ANAC46     <xxxxxxxxxxxxxxxxxx                                                             --------->ANAC58<xxxxxxxxxxxxxxxxsmallRNA(i)                                                  <---------ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <-----------GT1--------->At4g35610<---------ATERF1(1)                        --------->HSFB2a(2)      --------->ICU4  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ->ICU4     <-----------GT1                 --------->YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --YAB1--------->ICU4   <---------HSFB2a(2) ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxsmallRNA(i2)              <-------TEIL  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      < -------GAMYB --------->ANAC55(2) --------->MYB52(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <--   tcagttgtaatgtttcacttaatgttctaaaacaactaagagacattcgtaataactatagacaagcagcatcatcttcttgtagacgacgccaaatgtt  3117900                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                ----------->RAV1(2)                <---------ZAT2               ------>NtERF2              --------->DEAR3(1)            <-----------HVH21           ------->GAMYB           --------->ANAC58           --------->DEAR3(1)           --------->ANAC58           --------->ANAC46           --------->RAP2.6(2)          --------->MYB46(3)          <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------YAB1          --------->DEAR3(2)                  --------->ICU4          <------------AtMYB77   ------>ZmHOX2a(1)        --------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------ALFIN1xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      --------->ARR11(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------------AGL15              <---------ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------------->AGL15              --------->ARR14(2) xxxxxsmallRNA(i) <-----------RAV1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ARR11(3) xxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->ATHB12                 <---------CCA1(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------ARR14(2)        --------->At4g35610      <------- ---------GT1 <---------ALFIN1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------STY1(2)        <-------   ttgccatcccaaaccgccacctgttggaaatggtcctcgttgaaaatactgattgtagtaactcaatgctagctaaattatcaaatcttcaaattgctcg  3118000                                                                        --------->ANAC46                                                                        --------->ANAC58                                                                        <----------ID1                                                                        --------->ANAC58                                                                     --------->ARR14(2)                                                             <---------At4g35610                                                             --------->At4g35610                -----                                                             <---------ZAT2          --------->ARR11(3)                                                             --------->ZAT2          <---------ARR11(3)                                                         ------>ZmHOX2a(2)         ----------->ARR10                              <---------CCA1(2)        <---------ARR11(3)       --------->TOE2(3)                            --------->ANAC46      ------>ZmHOX2a(1)  <---------ARR14(2)         -----                            --------->TOE1(1)     ==============HOX2a_HOX2a     --------->TOE2(2)                            --------->TOE2(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------GLK1(2) --ANAC58                  =====================================HOX2a_HOX2a     --------->TOE1(2)   - --ANAC58                  ------>ZmHOX2a(1)  <---------GLK1(1)     <----------TaMYB80         ------   ttttccaaattccacaactcaattctatcctcgtaacttagaaattggattcctcgtgatctcagctagcatatacgaaaaacctaagattttgtaaaca  3118100                                                         --------->ANAC58                                                         --------->ANAC55(2)                                                         --------->ANAC46                                                  <-----------GT1                                               <---------ICU4                                              <---------YAB1                                             --------->TOE2(3)                                            --------->YAB1           --------->YAB1                                            --------->ATHB12        <---------YAB1                                            <--------HAHB4        --------->YAB1                         ---------->DOF2    <---------ICU4        <---------ICU4         --------->AHL20(2)                --------->ICU4--------->ANAC58         --------->AHL20(1)                <---------YAB1----------->GT1 ---->TOE2(2)      ----------->GT1       --------->YAB1  --------->ANAC55(1) ---->TOE1(2)     <-----------------------TaNAC69(2)     <---------ANAC55(2) ---------->GT1  <------ZmHOX2a(2)      --------->AHL20(2)--------->TOE2(3)                       --- --->YAB1<---------AHL20(2) ----------->GT1<---------ATHB12   --------->ICU4            <---------ICU4   taagataaaaattttttagatcagtataaaagtttaaaaccattaatcattaatacaatacgtaaaaatcatcataaaacataaaacaaaacatgacatc  3118200  Previous    Next  AGI:  At2g07486.1    Description:  transposable element gene. pseudogene, similar to OSJNBb0043H09.1, putative insertion sequence-like orf; blastp match of 47% identity and 1.2e-20 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)} Range:  from: 3117077    to: 3117670    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version