Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 --------->ANAC58                                                                               --------->ANAC58                                                                               --------->ANAC55(2)                     --------->ZAT14                                           --------->ANAC55(1)                     <---------ZAT14                                           <---------ANAC55(2)                     <---------ZAT18                                     <------MYB83                 <---------ARR11(3)                                    <--------P                --------->ZAT2                                         <---------MYB55(1)               ----------->ARR10                                      <---------MYB52(1)               --------->ANAC58                                      <---------MYB46(3)<---------LBD16           ----------------------->TaNAC69(2)                      <---------LBD16 --------->GLK1(1)          --------->ANAC58                    <-------TEIL     <-----------HVH21   <---------GLK1(1)          --------->ANAC58           --------->AtLEC2       --------->ARR11(3) --------->ANAC46        ---------->DOF2         --------->ANAC58           <------ZmHOX2a(1) <---------ALFIN1 <----------DOF2<---------ZAT2  --------->ANAC46         --------->MYB59 <------MYB46(1)           <- <---------DAG2--------->ANAC58 --------->ANAC58       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       xxxx   acgcttttcagaaagccaagctctgcacattactaagccatgcctaagttcatctagattaggaccttcaccggttggcacacgcaattccctgaagaac  3072900                                                                                                 <---                                                                                                 >>>>                                                                                                 >>>>                                                                                                -----                                                                                                -----                                                                                                -----                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)     -----                                                               <---------YAB1                 <------                                                          ----------->HVH21                  <------MYB83                                                    <-----------GT1                          <------MYB46(1)             <-----------RAV1(2)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <-------         --------->At4g35610         <---------At4g35610 <-----------HVH21                  <------MYB46(1)         <---------At4g35610         --------->At4g35610 --------->LBD16                    <--------         <---------ZAT2              <-------GAMYB<---------AHL20(2)    <-------TEIL        <------MYB83         --------->ZAT2 <----------DOF2    ------>ZmHOX2a(2) --------->CCA1(2)            <--------P- ---------DOF2     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ANAC55(2)               <---------MYB52(1) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------MYB46(3)  --------->ANAC55(2)              <---------MYB52(1)   gctttgtagtcagcttcaggctcaaacttttctgtaggcagttgatctatatttaaacccgtgatatgatgaaattcgttcaatccaaaccggttgggtt  3073000      --------->ANAC58      --------->ANAC46      --------->ANAC58  ------>MYB46(1)  ------>MYB83 --------->ANAC58 --------->ANAC58 --------->ANAC46 ------WRKY18(1) >>>>>>WRKY6 >>>>>>WRKY11 ---->WRKY45 ---->WRKY12                           <---------At4g35610 ---->WRKY38(1)---------->DOF2         --------->At4g35610            -------->P ------>HVH21 --------->AtMYB61 --------->ARR14(2)                   <-----------GT1 -GAMYB --------->ARR14(2)      <---------ARR14(2)            --------->ZAT14                    ---- --ANAC46<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <---------------AtSPL3                <---- -MYB46(3)   --------->ANAC46   --------->ZAT14           <---------------AtSPL8                ----- -------->MYB46(3)     ------>ZmHOX2a(1)               --------->ARR11(3)            XXXXXXXXXXXXXXXX   gaccagccacgatacaccaaagctccttcttcagtattctcagttgtctgcatagtagataatgtacagtcttaccagaccatagaaaatgactatcaac  3073100                                                                                        <----------DOF2                                                                                      <---------ZAT2                                                                                      --------->ZAT2                                                                                     <---------TOE1(2)                                                                              <---------HSFB2a(1)         --------->AHL20(2)                                                   --------->HSFB2a(1)         <---------AHL20(2)                     <----------DOF2              --------->GLK1(1)        <---------ATHB12                     --------->ARR11(3)            <---------ZAT18      --------->WOX13(1)                     <---------ARR11(3)          --------->ANAC46           < --->GAMYB                                  <---------CCA1(2)            --------->ANAC58        <--- -----MYB52(2)             <----------DOF2<---------CCA1(2)<---------GLK1(2) <---------GLK1(1) ------ ---->MYB46(3)   --------->ZAT2  <-----------ARR10    ------>ZmHOX2a(1)  --------->ANAC58   <-------- XXXX>MIR827     <---------ZAT2  --------->ARR14(2)---------->ID1      <---------AtLEC2 <---------DAG2   aaacttagcaattaatccaagctgtgtctctttcagttcttcccatatatcttttcctattgattctctaattgcagggaactctcccagctttatgttg  3073200                                                                                                    <                                                                                                    <                                                                   <------MYB83                     <                                                                <---------ANAC58                  ---                                <---------ALFIN1                <---------ANAC46                <xxxx                             <-----------------AGL1             <---------ANAC58               <xxxxx                             <-----------------AG    <---------ZAT18                        ---------        <----------DOF2   <---------ARR14(2)         --------->ZAT18                     --------->TOE1(3) ---------YAB1            --------->ARR14(2)       <---------------AtSPL8                --------->TOE2(3) ------YAB1              <---------GLK1(2)        <---------ANAC46 <------MYB46(1)      ----------->GT1 ----->GT1        --------->LBD16       ---------->DOF2         <---------AtLEC2        <----------ID1 ---RAV1(1)   --------->ANAC46<---------------AGL15--------------->AtSPL8          *TSS<---------TOE2(3)   tgattaatgcctttaccctccagattagaatccccctcttggtaaagtcttggagggtactcccttgcttggtcttcaaacatctgtataacgataaatc  3073300      <---------ICU4    --------->ANAC58    --------->ANAC58  <---------MYB52(1) <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------SPL7 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ------>At4g35610 xxxxxxxxxxxxsmallRNA(i)                                    <-----------RAV1(2) xxxxxxxxxxxxxxxxxsmallRNA(se3)                      --------->TOE1(3) ->DOF2                     --------->TOE2(3)        --------->TOE2(3) --------->TOE2(3)   agccgtaagcattccataactcagccataacataaaacaaactcatccacatataccataactcaggctaaaacataaatctaactcagccatagataac  3073400                                 --------->ANAC55(1)                                 --------->ANAC46                               <---------ALFIN1                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             ----------->RAV1(1)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          --------->ANAC46                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->TOE2(3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   <---------ARR14(2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      --------->ARR14(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       --------->ARR11(3)             --------->TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <-----------ARR10         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       --------->YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <---------ARR11(3)     --------->LBD16 ------>MYB46(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ARR11(1)      ---     <-----------HVH21 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <---------CCA1(2)        ---    --------->ANAC46 ------>MYB83--------->YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           ---   ataactccgtcataacataaacctatctcagccacacataacataactcagccataagataaatctaactcagccatatcttaacaaaaacttagtcaaa  3073500                                                                                             --------                                                                                      <---------RAP2.6(3)                                                                                     --------->RAP2.3(2)                                                                                     --------->RAP2.3(3)                                                                                   <---------At4g35610                                                                                   --------->ZAT2                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <--                                                       <---------GLK1(2)           --------->At4g35610                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-----------HVH21                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->RAP2.6(2) ------>TOE1(3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->TOE2(3)<------NtERF2 ------>TOE2(3)  ----------->GT1        <---------At4g35610       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------>YAB1 --------->At4g35610        --------->At4g35610     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ccataacataacaacagcttagttaaaacataaaccagactcagctatatcaaaacagaaactcagccataacataaacaaactcagccgtcatataaca  3073600                                                                                                  ---                                                                                 xxxxxxxxxxxxxxxxxxxx                               <xxxxxxxxxxxxxxxxsmallRNA(i)                     <xxxxxxxxxxxxxxxxsmallRNA(s)                          --------->YAB1                                      xxxxxxxxxxxxxxxx>smallRNA(i)                          --------->TOE2(3)                                   --------->YAB1   <xxxxx                  ----------->GT1                                            <---------ATHB12 -------         <---------YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       ----------->GT1         -------       --------->YAB1     --------->TOE1(3)                    <---------At4g35610         <------NtERF2 ->MYB52(1)      <---------TOE1(3)                             --------->At4g35610        xxxxxxxxxxx -------GLK1(2)  <---------TOE2(3) <-----------HVH21         <-----------RAV1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)   gaaactcagtcatcaatgtaaggttaaaccataactcagtcacagcataaaacaaactcagacacagatgaattgataaatcataaatcagtcggcaaac  3073700              <------NtERF2             <---------RAP2.6(3)             <-----------HVH21            --------->RAP2.6(2)                                      ---------->DOF2            --------->RAP2.3(3)                                   --------->TOE2(3)            --------->RAP2.3(2)            ------>NtERF2         ----------->GT1          <---------At4g35610              ----------->RAV1(1) ------>NtERF2  --------->At5g28300       --------->CCA1(2)               ------->GAMYB  <xxxxxxxxxxxxxxxxsmallRNA(s)     <---------GLK1(1)       --------->MYB46(3) ----------->GT1            <------ZmHOX2a(2)            --------->MYB52(1) ------>MYB52(1)           <---------ARR11(3)          <---------ATHB12 xxx>smallRNA(si3)  --------->AHL20(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        ----- xxxxxxxxxxxsmallRNA(i)    --------->AGP1 --------->RAP2.6(2) --------->DEAR3(1)             <------- -->ANAC58--------->At4g35610------>ZmHOX2a(2)         --------->MYB46(3)                   --------- -->ANAC58--------->ZAT2   --------->ARR11(3)        --------->WOX13(1)                --------->MYB46(3) xxxxxxxxxxxx>smallRNA(fl3)<---------AGP1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <----------DOF2  -----   aaacagtaactcagccgtcaaatcaaatagatctaagaaatcggccaccatatgtcaatcaacgacgacgttaaaaccgagctttaaaaaccatcgttaa  3073800  Previous    Next  AGI:  At2g07395.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 3068214    to: 3073283    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g07400.1    Description:  transposable element gene. copia-like retrotransposon family, has a 6.9e-53 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum) Range:  from: 3073730    to: 3078364    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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