Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <-----------GT1                              --------->ATERF1(1)                              <------NtERF2                             <---------RAP2.3(1)                             ------>NtERF2 <---------TOE1(3)                            <---------ATERF1(2)                            <---------RAP2.3(3)                            --------->ATERF1(2)                            <---------ANAC46 --->ZmHOX2a(1)             <---------DEAR3(1)       --------->YAB1                             ----- ----->TOE1(3)              <---------RAP2.3(2)     <---------YAB1                        --------->ZAT6 ----->TOE2(3)              <---------RAP2.6(2)   --------->YAB1                         --------->GLK1(1) --->ICU4                  --------->RAP2.6(3)   <---------YAB1                  <-----------HVH21 ->GLK1(1)     <---------ZAT6<---------ERF1<---------TOE2(3)        <---------TOE2(3)  <---------ZAT18   cttaatgtcatgagatagtcttagacaatggcggcagtgatttttcaggtttttataatcaagaagcactaaggcttcactaccatcagggaactctacc  2933900                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)                                                                       --------->ARR14(2)                                                                       <---------ARR14(2)                                                                 ------>ZmHOX2a(2)                                                                <---------GLK1(1)                                                                <------ZmHOX2a(2)                                                                --------->GLK1(1)                                                               --------->ARR14(3)            <-------                                                               --------->ARR11(3)            --------                                                               --------->ARR14(2)        --------->ARR11(3)                   <------MYB46(1)                             <---------ARR11(3)        <---------ARR11(3)                   <------MYB83       <----------DOF2          <---------ARR14(2)      ------>MYB83                 <--------P      --------->ANAC58             --------->GLK1(1)   <-----------GT1     <----------DOF2             --------->ANAC58             <---------GLK1(1)<---------GLK1(1)  --- ---->ZAT6<<<<<<<<<MYB98     --------->YAB1            >>>>>>>>>TBF1  <---------CCA1(2)------>MYB46(1)   actatctcttttgttaggggttggagtccattgataagcactttgagtttgacagaagaagaagagatctccatatccaagatttcaccaagctcttcac  2934000                                        <---------ARR11(3)        <------NtERF2                                        <---------ARR14(3)        <---------At4g35610                                        --------->ARR11(3)        --------->At4g35610                                       --------->GLK1(1)         ----------->RAV1(1)               --                                    --------->LBD16          --------->DAG2                       ---       <-----------GT1             <---------ANAC46         --------->DAG2                        --- --ZAT14 <---------TOE2(3)    <---------ICU4                ---------->DOF2       <-----------HVH21<- ->ZAT14<-----------GT1      --------->ICU4                ---------->DOF2  ---------->DOF2       <-- ------>MYB52(1) ------>ZmHOX2a(1)<---------LBD16          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <--   taatggtttttaacatttcctcttgccagtaatgtttacggagaccttggagttcaatccaaaaaggcagcatagatggaaaggagtcacagaaaactgt  2934100                                                                <---------ARR14(2)                  ------>MYB83                        --------->HSFC1(2)                  <<<<<<<<<<<<<<<<<LFY --------->ARR11(3)       --------->ARR14(2)                  ------>MYB46(1)      <---------ARR11(3)      <---------GLK1(1)           <---------KAN4(2)     --------->YAB1       --------->HSFB2a(1) ------------->AGL15          <---------ICU4          <---------HSFB2a(1) -------------->AGL3         <---------YAB1           <---------HSFC1(2)                            < -------------->AGL1         --------->ICU4      <---------HSFB2a(2)                                < --------------AGL15       --------->YAB1        --------->HSFB2a(2)                               <- ---------------AGL2  <---------MYB52(1)         <---------HSFC1(1) ------>ZmHOX2a(1)          <----- ---------------AGL3--------->ATHB12 --------->MYB59<<<<<<<ZML2<---------CCA1(2)    <---------AHL20(2)   cccatttttggagaatgaccatccattggtcataatggtaaggtctattatctagaaccttctacatatcctcttcaaaatcaaatttaaactggaaaca  2934200                     <---------ALFIN1                    --------->MYB46(3)                    <---------ALFIN1                  --------->ANAC46          ----------->RAV1(2)               <---------MYB46(3)        <---------ALFIN1<---------DAG2      <-----------RAV1(1)      --------->HSFB2a(2)            <---------ARR14(2)                                             - ----------DOF2  <---------ZAT18  <---------TOE2(3)                                       xxxxxxxxxxx ---------DAG2   --------->RAP2.3(3) --------->ARR14(2)     ---------->DOF2          --------->At4g35610 --------DAG2    --------->ZAT18  <---------TOE1(3)    ---------->DOF2              --------->DEAR3(1) ----ALFIN1    --------->PCF2 <----------DOF2         <------ZmHOX2a(1)           <---------At4g35610   cccttttcccagacctgagcccacaacctttcctttgaggttccatctgttggagaggaaaggaaagagagaccagagacgttgagccgctggattagtg  2934300                                                                        <---------ANAC46                                                                 <-------TEIL                                                               <---------ARR14(2)                                                               <---------GLK1(2)                                                         <---------At4g35610                                       --------->ZAT14   --------->At4g35610                             --------->YAB1 --------->GLK1(2)----------->ARR10       --------->ALFIN1           *TSS           --------------->AGL15      --------->HSFB2a(2)<---------ANAC58 -------->WRKY38(1)       <---------------AGL15      <---------HSFB2a(2)<---------ANAC58 xxxxx>smallRNA(i)        <----------DOF2   --------->ARR11(3) --------->ARR14(2)   <------ZmHOX2a(1)   agtcgacccatgagagtgagagcatttgctttaataagctctgaagtatctaggtctagagctcagattcgtttgcgagttggagaggagtagcctcttg  2934400                                                         <---------AHL20(2)                                                        --------->ICU4                      <--------                                                   ----------->GT1                     <---------MYB52(2)                     <---------AtLEC2        <------MYB83--------->AHL20(2)         <---------ARR14(2)              <---------TOE1(3)              <------MYB46(1)                    <---------ANAC46              <---------TOE2(3)             --------->MYB59                    <---------LBD16          <----------DOF2 <---------GLK1(2) <---------AtMYB61                 --------->ALFIN1        ----------------->AGL1            <---------MYB52(1)              --------->ICU4  ------->TEIL   ctaaacttttgcctttaaggtgagcatggattcttgtactcatggttaggtttgggtaataaatgagaacatggtaatagttgggggaaacgaactttca  2934500                      <---------LBD16                      --------->ATERF1(1)                     --------->ZAT2                    --------->DEAR3(1)                   --------->ATERF1(1)                  --------->ZAT2                                                                    -                  --------->At4g35610                                                               <                  <---------At4g35610                                                               <                <------ZmHOX2a(1)                                                                   -             <---------LBD16                                                                       <-      --------->AHL20(1)                 <------MYB83                                              --      <---------AHL20(1)    <------ZmHOX2a(1)                                                    ----      --------->AHL20(2) <------NtERF2--------->ARR14(2)                              --------->At4g35610      <---------AHL20(2)--------->LBD16  <------MYB46(1)                              <---------At4g35610     <---------ATHB12--------->At4g35610 ----------->GT1                          <------ZmHOX2a(1)-- --DOF2      <-----------RAV1(2)      <---------ARR14(2)      ----------->GT1  <---------LBD16-------   aggagcaataaattttcaggagcagccggaggaagttgcagataggtttaaacacagttcaacagggttaaaacagggttaccaggatagcagagggagg  2934600      ----------->HVH21    ----------->RAV1(2) -------->GLK1(1) ---------GLK1(1) ----------TaMYB80  --------->CCA1(2) -------->CCA1(2)  <---------ARR11(3)                                    --------->ANAC46 --------ARR14(2)  --------->ARR11(3)                                  <---------ALFIN1 -------->TaMYB80  <---------ARR14(2)                                 <-------TEIL   <-------TEIL --- ------->GT1   <---------At4g35610                    ----------->GT1 <---------WRKY12  <---------At4g35610 ------->ARR14(2)  --------->ARR14(2)        --------->HSFC1(2)       <---------WRKY38(1)         --- -->ALFIN1 <------ZmHOX2a(1)                 <---------HSFC1(2)    --------->At4g35610  --------->At4g35610   ggatatacctgaaggagagcagatatatcagatggtagcaagaaggaagtttcagagggagaaaacatcaggtccacgctggagaagttcatcagaaacc  2934700                                                                                          --------->ANAC58                                                                                 <--------P                                                                                 <---------MYB52(1)                                                <---------------AGL15        ------>ZmHOX2a(2)                                                --------------->AGL15        <---------LBD16                                               <-----------------AGL3       <------ZmHOX2a(2)                                        <---------ANAC58                    --------->ARR14(1)                                        <---------ANAC58                    --------->CCA1(2)                                        <------MYB46(1)                    --------->ARR14(2)          --------->LBD16               <------MYB83                       <---------ARR14(2)        <---------LBD16                 <---------ANAC46            <---------MYB46(3)   ------------       ------->TEIL                    --------->MYB55(2)          --------->ALFIN1--------->MYB52(2)       --------->MYB52(1)            <---------MYB52(1)         --------->DAG2  <---------MYB52(1)     <---------ABI4(2)    <---------STY1(2)    ----------------->AGL3      --------->ARR11(3)    --------->ANAC58      --------->STY1(2)    ----------------->AGL2      --------->AGP1<-----------    --------->ANAC46  <---------ANAC58 <---------MYB46(3)      ---------->DOF2 --------->LBD16    --------->ANAC58  ----------->RAV1(2)      <-----------------AGL2    ----------->ARR10--------->ANAC58  ---------->DOF2     <---------ANAC58<---------MYB55(1) ==========================HOX2a_HOX2a ------>ANAC58 --------->DAG2       <-------GAMYB        ===========================HOX2a_HOX2a ------>ANAC58---------->DOF2      <---------MYB46(3)    <------ZmHOX2a(1)<---------GLK1(1)   tcgcaaacgcaccggaaaaagctagcctggctagggaccgttgggtattgctaaaaataggagggaaaagtggttgagatccggttagtagcaagtacca  2934800  Previous    Next  AGI:  At2g07070.1    Description:  transposable element gene Range:  from: 2932225    to: 2934311    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version