Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <----------DOF2                            --------->ARR11(3)                            <---------ARR11(3)                         <------MYB46(1)              <                     ----------->RAV1(1)                               <------MYB83                --                ---------->DOF2     <---------ICU4       ------>ZmHOX2a(1)                         --        >>>>>>>>>MYB98--------->At4g35610  <-----------HVH21         <--------P    <---------ZAT6  <-      ----------->HVH21     --------->GLK1(2)     <------ZmHOX2a(1)--------->MYB52(2)         ------>ZmHOX2a(1)   ctctcgccctaacccattcaaagcagcaaaaatcttcatcttttctgttacaggacttcctacagaggctagttggtcacaaatagtcttaaggtcctta  2863000                                                    --------->At4g35610                                                    <---------ZAT2                                                    <---------At4g35610                                            <------NtERF2                                 <---------ANAC58                                          <---------ANAC58                         ---------->DOF2                                          <---------ANAC58                <---------GLK1(1)   <-------TEIL                           <---------ANAC46                --------->GLK1(1) ---------RVE1(1)                        --------->ATERF1(1)             --------->ARR14(2) ------->ARR14(2)         <---------At4g35610       --------->ZAT2       <---------ARR14(2) ------->ARR11(3)         --------->At4g35610 <----------DOF2           <------ZmHOX2a(1) <---------ANAC58 --------ARR11(3)    <---------ANAC55(2) <------NtERF2               <------ZmHOX2a(1)  <---------MYB46(3)   agatattcatccatagatttatcacgtttgctaacattttggaggcgtctttgcagctcaaataacctagaggaggaaaccctattaaagtggtttgcta  2863100                                                 <---------ARR14(3)                                      <---------ZAT14                                      --------->ZAT14                                    --------->ANAC46                                         ------>ZmHOX2a(2)                                  --------->AtMYB61                                        --------->ARR14(2)                              --------->WRKY38(1)--------->ARR14(3)                        <---------AGP1                              --------->WRKY12   <---------ARR11(3)               <-----------GT1    <-------TEIL              --------->WRKY45   --------->ARR11(3)              ----------->HVH21   <------ZmHOX2a(2)        <-------GAMYB        <---------ARR14(2)           <---------ARR14(2)  --------->AGP1            --------->At4g35610  --------->ARR14(2)           --------->ARR14(2)  --------->ARR11(3)        <---------At4g35610 --------->RVE1(1)            =======================HOX2a_HOX2a  <---------ARR11(3)   ----------------------->TaNAC69(2)                    <------ZmHOX2a(1)   <--- <---------GLK1(1)   <-----------RAV1(1)        --------->CCA1(1) --------->TOE1(2)        <---------ARR14(2) --------->GLK1(1)   --------->ALFIN1----------->RAV1(1)   ---------->DOF2<-----------RAV1(2)========   cagagatccatacctcatgagaagtgttgcagttgaccacaacactgagaatatcttctaagaaagaaccaaggagccaggatttgacaactcgatctgt  2863200                           ----------->HVH21                         <---------ANAC46                     <---------ARR14(2)                     --------->ARR14(2)                                     <------MYB46(1)                    --------->ATHB12                                        <------MYB83                    <------ZmHOX2a(1)   <---------WRKY18(1)                --------->ALFIN1        <---------REM1(1)<---------ANAC58                                <---------ANAC58        --------->ALFIN1 <---------ANAC58     <---------ATHB12           <---------ANAC58    <-----------RAV1(2) <---------MYB46(3) --------->MYB46(3)            <---------ANAC46      ------ ------ANAC46    <---------LBD16       --------->WRKY12           <---------MYB46(3)  <xxxxxxxxxxxxxx ==========================HOX2a_HOX2a --------->WRKY38(1)       <---------TOE2(2) <------ZmHOX2a(1)   cttgaaccaggtgtagtactcaggattgggtgaagccgatgttgacccatcaatgtctgaaacaacgctggtttggcttggtgcaggaatcgagcctgtg  2863300                                 <-------TEIL                                --------->ARR14(1)                               --------->ARR11(1)                               <---------GLK1(2)                               --------->ARR14(2)                             ----------->ARR10                           ---------->DOF2                  --------->ARR11(3)    ----------->HVH21                        --------->ANAC58        --------->HSFB2a(2)              --------->At5g28300                <---------WRKY18(1)             <---------HSFB2a(2)            <---------DEAR3(1)               --------->WRKY12<---------ARR14(2)     --------->GLK1(2)        <---------ANAC46       ---------->DOF2  --------->ANAC58    <---------GLK1(1)                --------->MYB52(1) ----->HVH21   ----------->HVH21--------->CCA1(2)--------->LBD16            ----------->HVH21 xxsmallRNA(i) --------->WRKY38(1)          --------->GLK1(1)               ----------->TGA1   acaaaacccagaagcccttgaccatcaagaaaagattcgaactgagatttccagagaatatagttcttggcagtaagagtgacggtgacacaatttgaaa  2863400                              --------->ARR11(3)                              <---------AGP1                                                  <------                              <---------ARR11(3)                                         --------->YAB1                              ------->TEIL                                 <----------DOF2  ---------                         <---------AtLEC2                           ------------>CBF   <---------WOX13(1)                         <---------ANAC46                          --------->ANAC58   <------------CBF                    <---------ZAT6                                 --------->ANAC58  --------->ATHB12                --------->ZAT14 ------>ZmHOX2a(2)          --------->RAP2.6(3)<---------TOE2(3)                <---------ZAT14*TSS          --------->At4g35610 ---------->DOF2    <---------YAB1   tattgagagaaggaacagagtagagttccatggatctatgttccatgagctctgataccatgaaggcaaaagcaatgctttaggttttcattgataatac  2863500                                                                                        --------->ANAC46                                                                                      <---------ALFIN1                                                                                   ----------->HVH21                                                                                  <-----------HVH21                                                                                 --------->ALFIN1                                                                               <---------O2                                                                               --------->O2                                                                               <---------At4g35610                                                                               --------->At4g35610                 <---------YAB1                                              <-----------RAV1(2)   <-----------GT1--------->ATHB12                                        --------->ANAC58 -----GT1   ---------->DOF2                                               --------->ANAC58    <------ >YAB1<----------DOF2           --------->AHL20(2)                        ----------->HVH21   -------   tctcttaactttacaaaagatgatggggttttgtttatatacaacaagagagacatagctaaaaccctagagagaaacgacaggtgtcacacatcaagct  2863600                                                                     <------MYB46(1)                                                                     <---------ANAC46                                                                     <------MYB83                                                                     <---------ANAC55(2)                                                                    --------->MYB111(1)                                                           --------->SPL7                    <-------                                                         <---------SPL7                      --------                                                         <---------SPL1(2)                   --------                                                        <---------ANAC58                     <-------                                                        <---------ANAC58                    ------>NtERF2                     <---------ARR14(2)                 --------->ANAC55(2)         <---------TOE1(3)                     --------->ARR14(2)                --------------->AtSPL3   <---------ANAC58                    <------ZmHOX2a(1)              <----------DOF2  --------->MYB46(2) <--------P ---ZAT2         <-----------RAV1(2)              <---------DAG2    --------->MYB59 <---------TOE2(3) -->ZAT2       <-----------HVH21             ---------->DOF2   <---------TOE2(3)<---------ANAC58   ggactctctgaatcaagggtcaggaacctgttctcaagcttgatgttgaaagccttttccgtactgagattaggtgaacttgtcttgaggttgccagctc  2863700           <---------ANAC46           <---------ANAC58    <---------ANAC46           <---------ANAC58    <---------ANAC58     ---------->ID1            <---------ANAC58              <---------ANAC58 <---------ANAC58     ----------->HVH21                      <---------ANAC58 <---------ANAC58   --------->At4g35610              <----------DOF2                            ----- --At4g35610   --------->HSFB2a(2)               <---------ZAT18                         <---------At4g35610 ->At4g35610   <---------HSFB2a(2)              <---------ANAC46                      <----------DOF2 ->ZAT2   --------->MYB52(2)<---------MYB52(1)<---------ANAC46                    ---------->ID1<---- --ZAT2 <---------MYB52(1) <-------GAMYB   <-----------RAV1(1)           <----------DOF2 --------->At4g35610   tgttcttgtcgttacttggagaagatgaccgttgcttccaagtttgtgttgtgggcttcttgggcctgcattgggctttcatttgtttctttgctgagtt  2863800       <---------ZAT14       --------->ZAT14                      <---------YAB1   <---------ARR14(2)        <---------ANAC55(2)                      <-------TEIL   --------->GLK1(2)         <---------ANAC46       ---------->DOF2--------->ATHB12   --------->ARR14(2)        <---------ANAC58 --------->KAN4(2)   <---------YAB1      ---------->DOF2 ---->ZAT14                  <---------ANAC58<---------ICU4       --------->ICU4   <---------ZAT6 -----ZAT14       <---------TOE2(3)      ----------->GT1        --------->YAB1<----------DOF2--------   cagagaaactgcagagttttgaggcttcattacttgaattgtgttgataattcccaaagtcttgtttcatgattcatcttctttactgtaaagaaatgaa  2863900  Previous    Next  AGI:  At2g06950.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.7e-243 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element) Range:  from: 2859223    to: 2863431    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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