Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->AHL20(2)                                 <---------AHL20(2)                            --------->AHL20(2)                            --------->YAB1                           <---------ATHB12                         --------->WOX13(1)                                                  --------                      <-----------HVH21                                                  --------->TOE1(3)                  --------->GLK1(2)             --------->AHL20(2)                       --------->YAB1                  --------->ARR11(3)            <---------AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------ZAT14    <---------ARR11(3)        <---------YAB1    <---------------------WRI1 --------->TOE2(3) ->DOF2          --------->RVE1(1)<---------AHL20(2)       <---------MYB52(1)         --------->WOX13(1)   ctgtagttgaataaactaaaaatctgtcaatcaaattaaatatgctataatttataaatctgttatcgctattttctaagaaatttgtcaaccataaaag  2854200                                                                                                   --                                                --------->ARR11(3)                      <------NtERF2                                   --------->LBD16                                    <---------ATERF1(2)                          ---------->DOF2  --------->YAB1                             --------->ATERF1(2)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         <---------ANAC58                   ----------->GT1--------->ANAC46      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <----                <---------REM1(1)--------->At4g35610  --------->TOE2(3)              <---------ANAC46             <-----------RAV1(1) <---------At4g35610  <---------HSFB2a(2)            <---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->YAB1--------->HSFB2a(2)  ----------->GT1   <------- -->DOF2    --------->ARR11(3)   <---------LBD16<---------ARR11(3)      <----------DOF2------>NtERF2   tctggcacaaaaaatatgttgtagttaaaaaagtctgcggaataagaataaatcttccataactaaacgatagacttttgtaaaattgctggcatttttt  2854300                             <-----------GT1                                        <---------AHL20(2)                            <-----------GT1                                      <---------ARR11(3)                        <---------YAB1                                           --------->AHL20(2)                     --------->AHL20(2)                        <-----------GT1   <---------AHL20(1)   ----------->GT1   <---------AHL20(1)                   --------->AHL20(2)     --------->AHL20(1) - -------->DOF2       <---------AHL20(2)                 --------->ANAC58   --------->TOE2(3)      --- -----------AGL15<---------AHL20(2)       --------->DAG2--------->ANAC58   ------->GAMYB   --------->ARR11(3) --AHL20(2)      --------->AHL20(2)      ---------->DOF2----------->GT1 <-----------GT1  --------->ANAC46   ttaaagggtaattttgtatttattttatttttaacacatgaaaaaaagtattttagacaagaaaataaccaatttaaccccaatattttataagacattg  2854400            <---------MYB52(1)                  ------>MYB83          ----------->GT1                       ------>MYB46(1)    --------->AHL20(2)                        XXXXXXXXXXXXXXXXXXXX>MIR399E    <---------AHL20(2)                        <---------MYB46(2)           <-----------GT1   --------->ICU4                             <---------MYB59       <-----------GT1 -------->ICU4                       ---------->ID1            <----------DOF2 -------->GT1       ----------->GT1 <-----------GT1----------->RAV1(1) <----------DOF2     --------->ANAC46   tagtaattaatctcgttattttgggttaatttagtttttttcccaataccaaacaacatttgcctcttttttacttttaactagttgagacacactaaac  2854500                 <---------ICU4                                                                    <-           --------->YAB1                  ------>MYB46(1)                                         --           --------->TOE1(3)               ------>MYB83             <---------ICU4       <-----------           --------->TOE2(3)             <---------ALFIN1          <---------YAB1     ------------>CBF          <---------YAB1                 ------->GAMYB           <---------ICU4      ================         <---------ARR11(3)             --------->MYB46(3)    --------->WOX13(1)     <------ZmHOX2a(2)         --------->ARR11(3)             <---------MYB55(2) <-----------GT1          --------->ARR14(2)        --------->YAB1                <-----------GT1  <----------DOF2         <---------REM1(2)   ==     ------>ZmHOX2a(1)          ----------->GT1 ---------->DOF2 <---------ATHB12  --------->ANAC46 ==   ccatctcctattatcttaaacatgcccatcaaaccggttttaaccaccctaatagctcttttatccatcattcttgctctctacacgatccaattgccat  2854600      ------>ZmHOX2a(2)     <------ZmHOX2a(2)     <<<<<<<<<GATA-4     <---------GLK1(1)     <<<<<<<<<GATA-1     <<<<<<<<<GATA-3    <---------AGP1    --------->ARR11(3)                                                <-----------GT1    <---------ARR11(3)                                               <-----------GT1   <---------CCA1(2)                                             --------->AHL20(2) ---------DOF2                                                  <---------ARR11(3) ---->ZmHOX2a(1)                                                --------->AHL20(1) -CBF<<<<<<<<<GATA-2           --------->YAB1                   <---------AHL20(1) =====HOX2a_HOX2a             <---------YAB1               ----------->GT1 ============HOX2a_HOX2a    *TSS              --------->ZAT2    --------->ARR11(3) ===========HOX2a_HOX2a --------->REM1(1)     <---------ZAT2<------ZmHOX2a(1)               ---------   cctttagatctctctcttctatagctacaactatcataaacaattcccaactcggagcattaggaaaatatttaacattctttggacacaaacaccatca  2854700                                                                                 <---------AtLEC2                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                                <<<<<<<<<<FUS3                                                                                <<<<<<<<<<ABI3                                           --------->ANAC58                --------->ATHB12                                           --------->ANAC58               <---------MYB52(1)            <---------ARR11(3)       <---------ANAC58                    --------->At5g28300            --------->ARR11(3)       <---------ANAC58                  -------->ZAP1         <---------AHL20(2)   <-----------HVH21                      <---------WRKY18(1)        <---------ATHB12      ----------------------->TaNAC69(2)    --------->WRKY45    --------->MYB46(3)       --------->ANAC58                       --------->WRKY38(1)   ------->TEIL              --------->ANAC58 --------->AtMYB61     --------->WRKY12      ----------- >AtMYB61--------->AHL20(2) ------->TEIL   --------->ANAC46         ----------->HVH21  <---------MYB46(3)   ccatgaaccaataaaatcttgtgagaaatggacgtcaaggcttacacaccaatacaagacttctcttgtgttgaccgtgatttgcatggttgtggtaact  2854800                                                        --------->TOE2(3)                      ------                                                        <----------DOF2              <---------CCA1(2)                                        <---------ARR11(3)          --------->ARR11(3)--------->ARR14(2)                                        --------->ARR11(3)          <---------ARR11(3)<---------ARR14(2)    --------->ICU4                  ---------->DOF2  <---------ARR11(3)      <----------DOF2   <----- >GT1    ---------->DOF2      ------>ZmHOX2a(1)      --------->ARR11(3)   ---------->ID1       <-----   tcagcaatgttcaaagcgccattgatgctgtccttgatcaaagctcttccaagactatctttaactccaagctcttgttcttttcccctatctccagtgc  2854900         <----------DOF2                                                                --------->YAB1      --------->GLK1(2)                                             ----------->GT1   <---------TOE2(3)   --------->ARR11(3)                        --------->CCA1(2)   --------->ZAT2   --------->At5g28300   <---------ARR11(3)                     <---------TOE2(3)      <---------ZAT2   <-------GAMYB------  --------->YAB1                 <---------AHL20(2)             --------->ANAC58<---------TOE2(3) <---------ATHB12       <---------YAB1    ----------->ARR10     --------->ANAC58<---------TOE1(3) --->ZAT14       ----------->GT1<---------AHL20(1)          --------->ANAC58    <---------ANAC46 ----ZAT14       <---------ZAT6 --------->AHL20(1)          --------->ANAC46   <---------At5g28300 ----ZAT18  --------->YAB1     <---------AHL20(2)           --------->ANAC58  <-----------GT1  ------   tcaatgatattcttttatagtgtaatatgatatatatatttactaagatttgagttcaatgtaagcaagcagggaaaatgttacggttaatgaaaacaag  2855000                           --------->YAB1                        <---------GLK1(1)                        --------->GLK1(1)                              <---------ARR14(2)                       <---------ARR11(3)                              --------->ARR14(2)                       --------->ARR14(2)                            --------->LBD16              --------->ANAC58                                --------->ARR14(2)                -----       <---------YAB1  <---------ARR14(2)                    --------->GLK1(1)           <---------ANAC58   --------->TOE1(3)   --------->ARR11(3)   <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------At4g35610   --------->TOE2(3)  <------ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->At4g35610 --->ANAC58   --------->ANAC46       <-------TEIL --------->ANAC58 <---------LBD16       <---------ANAC58 --->ANAC58   --------->ANAC58   <-------TEIL     --------->ANAC58--------->MYB52(1)     <---------GLK1(2)   acaaaccttattattcaaggaagaggatatcaaaatacatccatcgaatggaacgacacagcgaaatccaccggaaacactgctgaagatagcttctcct  2855100  Previous    Next  AGI:  At2g06940.1    Description:  pseudogene, similar to putative pectin methylesterase, blastp match of 41% identity and 3.5e-39 P-value to GP|20521423|dbj|BAB91933.1||AP003768 putative pectin methylesterase {Oryza sativa (japonica cultivar-group)} Range:  from: 2854628    to: 2855707    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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