Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ARR14(2)                                                                                    <---------ARR14(2)                                                                              <------ZmHOX2a(2)                                                                              --------->CCA1(2)                                                                             --------->ARR14(2)                                 --------->At4g35610                         <---------ARR14(2)                             ------>ZmHOX2a(2)                               --------->AGP1                            <---------GLK1(1)                               --------->At4g35610     -                           <---------AGP1                              <---------GLK1(1)            <                           --------->ARR11(3)                          --------->ZAT2        --------                           <---------ARR11(3)           ---------->DOF2--------->At4g35610   --------                          <---------CCA1(2)         --------->ANAC58   <---------At4g35610--------->ARR14(2)                      --------->TOE2(3)             --------->ANAC46 ================HOX2a_HOX2a   <-                      --------->TOE1(2)  <---------ATHB12      <---------MYB46(3)  --------->MYB46(3)                <-----------GT1  <---------At4g35610--------->ANAC58 <------ZmHOX2a(1)    <---------ARR14(2)   tttttgagtagaaacatatcacaaccttggatctcatctcccaatctatttctcaagccaaagaatggttaggagctcagatccaagaaccgaaacctca  2836600                                      --------->ALFIN1                                    <---------ANAC58                              <---------At4g35610                              <---------ZAT2                              --------->At4g35610                              --------->ZAT2                              <---------MYB46(3)                          --------->ANAC58                            <---------GLK1(1)                          --------->ANAC58                           --------->ARR14(2)                          --------->ANAC46                           <---------ARR11(3)                       ----------->HVH21    --------->GLK1(1)        <---------ARR14(2)                       --------->DEAR3(1)   <---------GLK1(1)      ----------->GT1                       --------->At1g77200 --------->ARR14(2)      <---------MYB46(3)               - -------->YAB1        --------->DEAR3(2)   <---------ARR14(2)   <---------ANAC58                  <-- ---------ICU4    <----------DOF2   <---------ANAC46            <---------ANAC58                  --- ->TOE1(3)       <---------ANAC58   <---------ANAC58            <---------ANAC46                  --- ->TOE2(3) --------->ATHB12  ------->TEIL <------ZmHOX2a(1)--------->ARR14(2)                     <-- --------ATHB12  <---------ANAC58---------->CDC5           <---------ARR14(2)   <---------YAB1   <---   aatcatgacacattgatttgcttcaccgacgcagcttagcgtgaggattccctagaggctggatttgggtggatatttgttgattattcaaaccatactg  2836700            ------>ZmHOX2a(2)           --------->CCA1(2)           <------ZmHOX2a(2)          <---------ARR14(2)          <---------AGP1                            ------->GAMYB          --------->ARR11(3)                       <---------ALFIN1          --------->AGP1                         ----------->RAV1(1)          <---------ARR11(3)                     ------>MYB83         <---------CCA1(2)                      --------->ANAC46        ----------->ARR10                      --------->MYB46(3)             ---------->DOF2     ----------->RAV1(1)                       <---------MYB55(2)            <---------WRKY45 -------->KAN4(2)                             --------->ANAC58       --------->MYB46(3) -------ARR14(2)               --------->ARR14(2)------>MYB46(1)--------->ANAC58 ------>ARR14(2) <---------At4g35610          --------->ANAC58  --------->ANAC58 ---->TEIL--------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----------->RAV1(1) ---------ARR10  --------->At4g35610          --------->ANAC46  --------->ANAC46 ------GLK1(2)--------->At4g35610            ------>NtERF2  --------->ZAT6   <---------WRKY38(1)   <-   aatcttcccacagatctgcagcgaagaacatcagttcttctcttggccacccaacacacttaagactcgcaacagctagtcaaagcacttaatggtgagc  2836800          <---------At4g35610          <---------GLK1(1)          --------->GLK1(1)                ------>ZmHOX2a(2)          --------->At4g35610            --------->ARR11(3)   --------->ATHB12                     --------->YAB1                    <----------DOF2         --- --------ALFIN1        <---------AHL20(2)<---------ARR11(3)     <---------ARR11(3)             ------   cccatccattggagctccatgggattttattcgacctcgctatgatctctctaaacttcgatgcaatttcttatgcctttgttaagagagataacaacat  2836900                                                                       --------->MYB46(3)                                                                      -------->P                                                                      ------>MYB46(1)                                                                      ------>MYB83                               ------------>CBF                      --------->MYB55(1)                             <----------DOF2                         --------->MYB52(1)                            <---------ANAC58                        --------->AtMYB61                 <---------TOE1(3)                                 --------->MYB46(3)      ----------       <-------TEIL         <---------ANAC58                  --------->YAB1  >>>>>>>>>>WRKY26    --------->At4g35610 <----------DOF2                   <---------AHL20(2)  >>>>>>>>>>WRKY43    <-- ------->DOF2    <---------TOE2(3)    <---------At5g28300 --------->AHL20(2)  >>>>>>>>>>WRKY38 <----- --->TOE2(3) --------->At4g35610     <-----------GT1     --------->AHL20(2)  --------->WRKY38(1)<----   taaagccgatgcattagctaaggctgctttgctttcaattcaccatgtactggttcacatttaataaaaaccaaccgatttgaccaaaaaaaaaaaagga  2837000               --------->YAB1                      <---------KAN4(1)               --------->TOE2(3)                   --------->KAN4(1)     ---------->DOF2    *TSS                      <---------KAN4(2)                                 < <-----------GT1     --------->ANAC58         --------->YAB1                               ---------- >DOF2    ------------>CBF            <---------ANAC58                                    <-------MYC3 -------MYB46(3)     --------->ANAC58 <---------ANAC58      --------->ZAT6       --------->DAG2    <- -ZmHOX2a(1)  <<<<<<<<<ARR1           ----------->GT1  --------->YAB1           ---------->DOF2    <- --------CBF  <<<<<<<<<ARR2           <---------ANAC46<-------TEIL        ----------->GT1 ------->MYC3   ttgttaccaaagaacaatcttagaagcaaatgtgaagtttgggtgaaataagaatattcataacactctaacaaatatgtgaaaaagtcaaacgtgttat  2837100                                                           <---------ARR11(3)                                                           --------->ARR11(3)                                                           --------->AHL20(1)                                                           --------->AHL20(2)                                                           <---------AHL20(1)                     <---------WOX13(1)                    <---------AHL20(2)                    <---------ANAC58          --------->ALFIN1                             ----------        <---------ANAC55(2)                 <---------ANAC58                    --------->ICU4        --------->ANAC55(2)                 <---------ANAC46          <---------DAG2   --------->ZAT6 <<<<<<<<<MYB80 <---------ANAC58            <---------ANAC58   --------->AHL20(2)--------->ATHB12 ->GT1 <-------TEIL <---------ANAC58     --------->ANAC46 --------->AHL20(2)    <---------YAB1 -----MYB83<---------ICU4     --------->WOX13(1)   ----------->GT1    <----------DOF2<-----------GT1 -----MYB46(1)  <---------ANAC58<---------ATHB12 <---------ANAC46  <-----------GT1 <---------WOX13(1)   ttggtttgatacataatgacttgagtgattttcaatcaactccaagtcgtggagggaaaaatatattatatactttttatcgatgattaacactaaagat  2837200                                                                            <------ZmHOX2a(2)                                         --------->AHL20(2)    --------->GLK1(2)                                         <---------AHL20(1)    --------->ARR14(1)                                         --------->AHL20(1)   <---------ARR14(2)                                         <---------AHL20(2)   --------->ARR14(2)                                        <---------AHL20(2)    --------->ARR11(3)                              --------->DAG2                  <---------GLK1(2)            <---------YAB1               <---------TOE2(3)  ----------->GT1             <---------ARR11(3)  <---------ANAC46 <----------DOF2             ---------->DOF2              ---------->DOF2  <---------ARR11(3)       < >DOF2------->TEIL     ---------->DOF2  --------->AHL20(2)--------->YAB1   --------->ARR11(3)--------   gggctttgaatctatttaagaaattcaaaggaaaagttgaaaataaattagataagacaataaagattctctgatcagatcatggtggagattataaatc  2837300                                                                                             --------                                                                                            <--------                                                                                           --------->AHL20(1)                                                                                           --------->AHL20(2)                                                       ------>ZmHOX2a(1)                   <---------AHL20(1)       <---------YAB1                                  <----------DOF2                  --------->AHL20(2)     --------->ATHB12           --------->YAB1        --------->TOE2(3)               --------->AHL20(2) ---------ATHB12       ----------->GT1          <----------DOF2                   ----------->GT1   - ->WOX13(1)<-----------RAV1(1) <-------TEIL     <---------DAG2                 ---------->DOF2   <---   aaatgaatgatttttgttgcacatatggaaacattcatcaaactaaaacactttatcctttgttacaaaaacagaggtaccaaaagataaaaatataata  2837400                                             ------>MYB46(1)                                             ------>MYB83                                           <---------MYB46(2)                                           <---------MYB111(1)                                           <---------MYB59                                        <---------ALFIN1                    --------->TOE2(3)   --------->DEAR3(1)                    --------->YAB1     --------->MYB46(3)                   <---------YAB1   --------->ZAT18                  <---------TOE2(3) <---------ZAT18                                            ------             ------->TEIL           <-------TEIL                                              <------ZmHOX2a(2)     --------->CCA1(2)           <---------At4g35610                                         <------- ->YAB1   <---------YAB1       <-----------RAV1(2)    <---------ANAC58                       -------- -YAB1 --------->ICU4  <xxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ALFIN1                     -------- --------->DOF2--------->AHL20(2)--------->At4g35610  <---------ANAC58                      <------ZmHOX2a(1) ------ANAC55(2)<---------AHL20(2) --------->ALFIN1   <---------ANAC46             --------->YAB1  --   cttaaagagatgatgaattttatgttaatcgattcaggtgcaccacctaatctatggggtgaagctattctcactgctaattcaatcttgaataggatcc  2837500  Previous    Next  AGI:  At2g06920.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 7.7e-13 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 2832080    to: 2836511    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g06922.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.3e-20 P-value blast match to GB:AAD12998 pol polyprotein (Ty1_Copia-element) (Zea mays) Range:  from: 2837024    to: 2838334    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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