Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->ANAC55(1)                                                             <---------ANAC55(2)                                                             --------->ANAC55(2)        <---------ANAC58                                                             --------->ANAC46           <---------ANAC58                                                     <---------AHL20(2)             <---------ANAC58                                                    --------->AHL20(2)     <----------DOF2                                                    --------->YAB1        <---------ANAC46                                                 --------->YAB1           <---------ANAC58                                                <---------ATHB51     <-----------RAV1(1)<---------ANAC46                                                <---------ATHB12    <---------YAB1  <---------ANAC58 -------->DAG2                              <------ZmHOX2a(2)--------->ANAC58     <---------AHL20(2) ------->DOF2  <---------AtMYB61            <---------ATHB12 --------->ANAC58     <-----------GT1   - --RAV1(1)--------->ANAC55(2)           --------->DEAR3(2)  ------->TEIL  <---------ANAC58         <-   aaaaggctacttatgtgatggtcttatcaaatagcatgttgaaccgatcaataataaaaatgcacgtaatattgttgcttttatttacttgcttgtttca  2825800                                           --------->AHL20(2)                                         <----------DOF2                                         <---------------AGL15                                         --------------->AGL15                                        <-----------------AGL2                                        ----------------->AGL2                                        ----------------->AGL3   >>>>>>>>>ARR1                                        <-----------------AGL3   >>>>>>>>>ARR1                                    --------->YAB1               >>>>>>>>>ARR2                                   <---------YAB1                >>>>>>>>>ARR2                                  <-----------GT1               <------ZmHOX2a(1)             <------         <---------AtLEC2        <---------ICU4                <---------YAB1                 -------         <---------ANAC46        --------->YAB1               <---------TOE2(3)        --------->ANAC58         <---------ANAC58       <---------ATHB12          ------->TEIL                 --------->ANAC46         <---------ANAC58       --------->ICU4         <---------YAB1               <---------ARR14(2) -------->ATHB12              --------->WOX13(1)     --------->YAB1                 --------->ARR14(2) --------ATHB12            <-----------HVH21        --------->ICU4 <---------MYB46(3)  --------->ANAC58   aatgatttatggcatggacaaatgagacatgtcaattatcattctttatatagaatgatgaatttaggattgttaccaagacttcatatacgacaattaa  2825900                                                                                 --------->LBD16                                                  ===============================================MADS_MADS                                                  --------------->AGL15         --------------->AGL15                                                  <---------------AGL15        <-----------------AG                                                 ----------------->AGL2        ----------------->AGL2                                             ------>ZmHOX2a(2)                ------>ZmHOX2a(1)                                             =====================================HOX2a_HOX2a                                            --------->GLK1(1)         ------->GAMYB                                           --------->ARR14(2)        --------->MYB46(3)          ----                                           <---------ARR11(3)      --------->MYB52(1)            <---                         <------ZmHOX2a(1) <---------AGP1          ------>MYB83<-----------------AGL1                         ===========================HOX2a_HOX2a    ------>MYB46(1)     ----------->GT1                         ==========================HOX2a_HOX2a    --------->MYB55(1)   --------->YAB1                   --------->MYB111(2)     --------->ARR11(3)    --------->MYB46(3)<---------ARR14(2)                   <---------MYB46(3)      <---------ARR14(2)    <---------MYB55(2)--------->ARR14(2)                   --------->MYB111(1)     <-----------ARR10    --------->ANAC58<---------HSFB2a(2)     <---------ATHB12  --------->MYB59     --------->AGP1----------->GT1   ------>ZmHOX2a(1) <------- ---AHL20(2)       --------->MYB46(2)     <---------CCA1(2)     --------->ANAC58--------->HSFB2a(2) -->AHL20(2)      <--------P <----------DOF2<------ZmHOX2a(2)   --------->ANAC46<---------------AGL15   tcccccaatgaagtctattggtagttaggaacttttgaaaaaccagatctcactaaaaacagtaatacccaacggtcctcctccagaaatggtaatgtca  2826000                                        --------->YAB1                                        <--------HAHB4                                        <---------ICU4                                  --------->ANAC55(2)                <---------ZAT2                               --------->WRKY12                      <---------HSFB2a(1)                               --------->WRKY38(1)                   --------->At4g35610                              --------->DOF5.7(2)                    <---------At4g35610              --------->GLK1(2)----------->HVH21                     --------->HSFB2a(1)              --------->ARR14(2) <---------LBD16                     <---------HSFC1(2)         --------->ANAC46    <-------GAMYB                           --------->HSFC1(2)    ---------->DOF2     <---------DAG2 --------->ICU4               <---------ARR14(2) ----->At4g35610        <----------DOF2<---------ATHB12             --------->ARR14(2) --------->LBD16 ------At4g35610     ------>NtERF2--------->ANAC46           ---------->DOF2     <---------ALFIN1 ----HVH21    <---------ARR14(2)<---------DOF5.7(2)  <---------ANAC46--------->ZAT2   <---------LBD16   actggacaaagacgcgattccgacgacttttcgttgacggaatcatttttctccagcgtagaacaaagcggagcttccatcccccattccctggtagtgt  2826100                                                                                 >>>>>>>>>MYB98                                                                                ------>MYB83                                                                                --------->MYB52(1)                                                                              <---------MYB59                                                                        --------->ANAC46                                                                      ----------->RAV1(2)    <-------                         <---------ANAC46                            -------->P ------>MYB46(1)                       <---------ANAC46                              <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <---------ICU4                                    ------>ZmHOX2a(1)      >>>>>>>>>>>                 --------->ATHB12                                 --------->TOE2(3)    ---------->DOF2                --------->ICU4                               ------>ZmHOX2a(1)--------->AtMYB61                <---------YAB1                              --------->TOE2(3) <---------MYB111(1)             <---------YAB1                   <---------MYB52(1)<---------YAB1<---------MYB46(2)  ---   ctctacttcttctctctgattattgctgtgtgtaaacttattcaaactgttaagcctgttttccttatccttacctgcaacctaacccataaatccattg  2826200                                                  ---------->DOF2                                               <---------MYB59                                               --------->TOE2(3)                                         --------->ANAC58                                         --------->ANAC46                                         --------->ANAC58                                         <---------ALFIN1                                         <--                                       ----------->RAV1(1)  --------->ARR11(3)                    ---       XXXXXXXXXXXXXXXXXXXX>MIR162A/B  *TSS    --------->TOE1(3)                  ----------->RAV1(1) -----CBF                     ---------->DOF2<-----------------AGL1              --------->ANAC46 --- >>>>>>LFY    ----------->RAV1(2)  --------->GLK1(2)    ---------->DOF2  <---------ANAC58  <---------HSFB2a(2) ------>WRKY38(1)    <-------TEIL <---------GLK1(2) --------->DAG2       <---------ANAC58  --------->HSFB2a(2)   ttgactgtctctaaacccctgcattcatggataaaagaatcccacacaacctaaaaggcaaaggtattgactagggcttctctccaccagtttgcagaag  2826300                                                                   ------>MYB83                                                                   --------->ARR14(2)                                                                   ------>MYB46(1)           <---------ZAT6                                          <---------ARR14(2)      ----------->RAV1(1)                                         --------->WOX13(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        --------->MYB46(3) -------ARR14(2)   <-------TEIL                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>GLK1(2)--------->MYB59                <-----------------AGL1        --------->AtLEC2    <---- ------>ARR14(2)  --------->CCA1(2)           --------->ZAT6  <-----------GT1             --------->PCF5   aatccgagcaccagagttagatacaagcttattgaagcaaactcactcactctaatgggccagttaaccaatccgtctatgcaaagactatggtccctct  2826400                                                                <---------ANAC58                                                               <---------HSFB2a(1)              -----                                                 --------->CCA1(2)                              -----                                                 ==================HOX2a_HOX2a                  -----                                                 <------ZmHOX2a(2)                              <----                                                <---------ARR11(3)                             <-----                                                --------->ARR14(2)                            -------                                                <---------ARR14(2)                            -------                                                <-----------ARR10                            <-------                                                --------->AGP1 --------->HSFC1(2)            --------                                                <---------AGP1 --------->HSFB2a(1)           --------                                     ----------->RAV1(1) <------NtERF2                     ----------                      ===========================RAV     <---------At4g35610             <------ZmHOX2a(1)                      ----------->RAV1(2)       --------->ARR11(3)                      XXXXXXXXXXXXX                    --------->ARR14(2)        ----------->ARR10<---------HSFC1(2)    <---------YAB1                    <---------ARR14(2)     <-----------HVH21<------ZmHOX2a(1)      <---------ICU4   -               --------->At4g35610--------->ANAC58=================HOX2a_HOX2a <---------YAB1--------      ------>ZmHOX2a(1)           --------->ANAC58------>ZmHOX2a(2)          <----------DOF2 <------- ------DOF2  --------->MYB46(3) ---------->DOF2<---------CCA1(2)<---------ANAC58  --------->ICU4-----   ttcccttcctctcaaaccgctggaacctgaagggcaaagccacagggtcagatctgggcagaggatgcttccagtttagctttgattatgaggaagatac  2826500  --------->DAG2 ---->ANAC58 ---->ANAC46 ---->ANAC58 -----ANAC55(2) --TEIL                                             --------------->AGL15 -->ARR14(1)                                       <-----------------AGL1 -->CCA1(2)                                        ----------------->AGL1 --ARR11(3)                                        <-----------------AGL3 ->ARR14(2)                                        ----------------->AGL3 ->ARR11(1)                     >>>>>>>>>>>>>>>>>LFY<---------------AGL15 ->ARR10<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ----------------->AGL2 XXXXXXX>MIR835-3P            <---------YAB1       <-----------------AG --------->DOF2             <---------ICU4    --------->KAN4(2)                                    <- ->ARR11(3)                 --------->YAB1<------MYB83                           <----------DOF2----- --ARR14(2)                --------->ICU4 <------MYB46(1)             <---------ARR11(3)     -------- ---->ANAC55(2)  --------->ANAC46     <---------MYB46(3)              --------->GLK1(2)     <--------   gcaaaaggttttggataataggccataccattatgaccagtggatggtcattctccaaaaatgggaacccataatctttgactcttttccttcaatgatc  2826600                                                                                          --------->ARR11(3)   --------->HSFB2a(2)                                                                    <---------ARR11(3)   <---------HSFB2a(2)                                                       ---------->DOF2        <  <---------LBD16                                                        --------->ZAT2--------->HSFB2a(2) ---------DOF2     <---------ARR11(3)                                    <---------At4g35610     <--- ->ZmHOX2a(2)      --------->ARR11(3)                   ---------->DOF2  <---------ZAT2<---------HSFB2a(2) ->YAB1<---------WOX13(1)     --------->ZAT6  <---------ARR11(3)         --------->At4g35610  ------- -ATHB12           --------->ARR14(3)   ----------->RAV1(1)          ---------->CDC5--------->GLK1(2)   cctttctggattgacattcaaggtctcccaaaacactactggcaacatgatatatgctcaaagctattggctcagagctgaaagaaattctagatatcaa  2826700  Previous    Next  AGI:  At2g06912.1    Description:  pseudogene, hypothetical protein Range:  from: 2826239    to: 2826928    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version