Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------ICU4                xx                                                                     -------->HAHB4                <-                                                                  --------->YAB1                  <--                                                --------->ZAT18  <---------YAB1           <---------GLK1(1)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->GLK1(1)                                     ----------->ARR10  --------->YAB1                  <------ZmHOX2a(1)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------ATHB12            xxxxxxxxxxxxxxxxxx  ---------->DOF2          --------->ZAT18xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <----------DOF2 <------ ---------TOE2(3)<-------TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ICU4 xxxxxxxxxxxxxxxxxx   ttaagaaagaacatgtaggctcatagaagggctctggtttagatactaggtgaactaatcaaacttgataataatgcatactttagtataggatttctcg  2800300           --------->YAB1                          <---------MYB52(1)                              --           --------->TOE2(3)                  --------->MYB52(1)                                   --       <---------MYB52(1)                    --------->AtMYB61                                     --      <---------MYB52(1)                     --------->DEAR3(1)                                  ----     --------->LBD16                         <---------ALFIN1                                    <---   <---------LBD16                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  <--- xxxxxxxxxxxxxx>smallRNA(s)           --------->LBD16                                            <--- ---------DOF2                       --------->ANAC46 --------->ZAT6                          ------- -------GLK1(2) --------->ZAT6      <---------HSFB2a(2)        --------->YAB1         xxxxxxxxxxxxxxx xxxxx>smallRNA(si3)                --------->HSFB2a(2)       <---------YAB1       <---------MYB46(3) ---LBD16  --------->TOE1(3)        <---------LBD16<---------ARR14(2)    --------->At4g35610 -------- xxxxx>smallRNA(le3)               <---------ANAC46--------->ARR14(2)    <---------At4g35610 <-------   gcttctccggttatcttaactctaagtatagagagtttcgcggaacaccaccggttactctaaaatcatagtttgagctcaagaatggttcgataacaac  2800400        --------->HSFB2a(2)  <---------------AGL15                                      --------->AHL20(1) ------>P                                                    --------->ARR11(3) ---->MYB46(1)                                               <---------AHL20(1) ---->MYB83--------->ARR11(3)                                <---------ARR11(3) ----->AtMYB61                                              --------->RVE1(1) ------MYB59                                                --------->CCA1(1) ------MYB111(1)                                ----------->HVH21                  <---------ATHB12 ------MYB46(2)                     <---------ARR14(2)  --------->AHL20(2)    ------>MYB46(1) >GAMYB <---------HSFB2a(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        ------>MYB83 x>smallRNA(i)      --------->YAB1  --------->ARR14(2)<----------DOF2       --------->AtMYB61     <-- ->MYB46(3)<---------ARR11(3)  ------>ZmHOX2a(1)----------->TGA1            ------->GAMYB    <------- --MYB111(2)--------->CCA1(2)  --------->LBD16----------->RAV1(2)          --------->MYB46(3)<-------   ctacctatttctagatatactatcatctatttcctgagaataccctaagcctgacgcttttaatatcttgtttcacaaccatccaatcgtctattgctta  2800500                                  --------->At4g35610                     <----------DOF2                              <---------ANAC58              <---------ANAC58                              <---------ANAC58              --------->ANAC55(2)                              --------->ANAC46              <---------ANAC58                              --------->ANAC55(2)           <---------ANAC55(1)                              <---------ANAC55(2)           <---------ANAC55(2)                             --------------->AtSPL8         <---------ANAC46     <---------ARR14(2) --------DOF2    <---------ICU4  ------->TEIL          xxxxxxxxxxxxxxxx>smallRNA(i)             ----- --ANAC58       <-------TEIL <---------TOE2(3)  <----------DOF2        <---------ARR11(3)      ------ --ANAC58<----------DOF2    <-----------GT1     --------->TOE2(3)   --------->LBD16    <------ZmHOX2a(2)   cttttgtttctctttagattcattactgttttacgtagcttaattcaaaactttagtctattgcgtgttccgagagctttgtgaattcgatccctaagtg  2800600             <---------AHL20(2)    ----------->HVH21                      <-----------GT1                                        <--    ------->GAMYB                         <-----------GT1                                       -----   <------------AtMYB77               <---------AHL20(2)                                 <--------HAHB4   <---------MYB52(2)                --------->AHL20(2)                                  <---------ICU4  <---------At4g35610                <---------AHL20(2)                     --------->YAB1      =====  --------->At4g35610            <---------YAB1   <---------ARR11(3)      ------->TEIL   --------->ATHB12 ---->At4g35610                 <---------TOE1(2)<---------CCA1(2)<------ZmHOX2a(2)   --------->ANAC46 --->ALFIN1<----------DOF2    <---------SPL7  --------->TOE2(3)  *TSS  <---------ATHB12 <---------ATHB12   ctgcaactgacctctttatttgagagagtggtcttacgattaatttaacctatatctattcacatgggatcaaatgaatcacaaatacccatcatttgca  2800700                  <---------ANAC58           ----------->RAV1(2)         --------->WOX13(1)      --------->ANAC58      --------->ANAC58    ---------->DOF2      <----------DOF2        --------->AtLEC2 ---------RAV1(2) <---------ANAC46         <-----------GT1                                         xx ------>RAV1(1)   <---------ANAC58       <---------AHL20(2)                <-----------RAV1(1) ------ ======================RAV         <---------WOX13(1)                      <---------MYB46(3)  <-----   ccagaagaaagcaatctgaggcttgaactttctactgatggatttaatccattcaagatgaagaatacaaggtatagttgttggcctattttgctagtaa  2800800            --------->AtMYB61           --------->TGA1a           --------->At4g35610              <---------ANAC58           <---------At4g35610              <---------ANAC58                 --------->AtLEC2           --------->bZIP60(2)             <---------ICU4                    --------->ANAC58           --------->ANAC46           --------->ARR11(3)                     --------->ANAC58         <---------ALFIN1             <---------ARR11(3)                   <-----------RAV1(2) xxxxxxxxxxxxxx>smallRNA(s)     <------ZmHOX2a(1)                       ------->GAMYB --->ZAT14 --------->O2        ----------->GT1     ----------->GT1     --------->MYB46(3) ----ZAT14------>NtERF2 --------->AtLEC2  <---------YAB1           <------NtERF2   --------->YAB1   -   actacaatctgccacctcacttatccatgaagaaggagaatatcatgcttaccatgttaattcttgggcctcaacagccaggcaatagtattgatgtcta  2800900                                                                               <-----------------AG                           <---------At4g35610                                 <-----------------AGL1                           --------->ZAT2                          ---------->DOF2           --------              <---------TOE2(3)                                    --------->AHL20(2)       ---------         --------->YAB1    --------->At4g35610               xxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------ATHB12   <---------ZAT2                <---------YAB1        ====================== --------->DOF2  --------->GLK1(2)                    ----------->TGA1     <----------DOF2  <--------   cttagagccactcatagaggttctatgctagctgtggaattgtggtgagttaacttatgacgatttcaataaaacgacttttactcttaaggcaatgatg  2801000                                        --------->At4g35610                               <---------ARR14(2)                               --------->GLK1(2)                       <----------DOF2  <---------At4g35610                    ------>ZmHOX2a(1)  <---------MYB46(3)                    --------------->AGL15                    <---------------AGL15                                           --------->AHL20(2)                   <-----------------AGL3                                           --------->YAB1 ->YAB1            <-----------------AGL1                               <---------MYB52(1)          - >ICU4             <-----------------AGL2  <------NtERF2               ------>ZmHOX2a(1)            < ===================================MADS_MADS---------->DOF2           <---------DAG2              -- -ATHB12        <-----------GT1--------->ARR14(2)     ----------->GT1  <----------DOF2             <-   ctatggaccataagtgattttcctgcttatgggaatcttgttggctgcaaagtaatgggtaaaattggctgtcctttatgtgagaataatataaactcga  2801100             <------ZmHOX2a(1)            --------->LBD16                  <---------ARR11(3) <---------------AGL15          <---------LBD16                    --------->ARR11(3) --------------->AGL15          <-----------RAV1(2)              --------->DAG2<---------ALFIN1                         --- <-------GAMYB                           ---------->DOF2------>MYB46(1)                         ----- -------->MYB55(2)                 ----------->RAV1(1)  ------>MYB83     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------MYB46(3)              --------->ANAC46       ----------->RAV1(1)                     ------ ------->ALFIN1              <---------ARR14(2)       --------->AtMYB61  <XXXXXXXXXXXXXXXXXXXXMIR166A-G --------AtMYB61             --------->ARR14(2)      --------->MYB46(3)  ---------->DOF2       xxxxxx   ggtggttgaagttcaggagaaaatatgtgtatatatgccacagaaaaggtcttctaccaacacatacttataggggaaagaagtcatggtttgatggaaa  2801200  Previous    Next  AGI:  At2g06900.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 8.6e-144 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element) Range:  from: 2800665    to: 2802974    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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