Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       ------>MYB83                                                     ------>MYB46(1)                                                     --------->MYB52(1)                 <----------DOF2                   <---------MYB46(2)             ------->GAMYB                  <---------WOX13(1) <---------DAG2         <----------ID1                   --------->ATHB12     <----------DOF2    --------->YAB1  <---------AtMYB61     -------->HAHB4      <---------ANAC58                 ------ --->ANAC58 --------->MYB46(3)           --------->ICU4       <---------ANAC58                ------- --->ANAC58 <---------MYB52(2) <----------DOF2     <---------MYB59            <-------TEIL  <--------   ccacaatcgaaacaacaaacttttggtggaagcctttgagaaaatgatggataccaaactgaatgcttttcgccaagagtttcatgagaaactagagttg  2794700                                                                                             <-------                          ----------->GT1                        <------ZmHOX2a(2)           --------                          <---------ZAT6                ------->TEIL                      <XXXXXXXXXX                       <------ZmHOX2a(1)             <---------REM1(1)                <---------ALFIN1 --->ALFIN1  <---------HSFB2a(2)                   --------->CCA1(2)               <------ZmHOX2a(1) -->ALFIN1   --------->HSFB2a(2)              ---------->DOF2    =========================HOX2a_HOX2a -ZAT6     ------>ZmHOX2a(1)             <xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxxxxxxxxxx   gggcagactcgtcctcgagaatgaaggagagttaatgagccgcttgagcaaagagatgaagctacagatcagtactatgggcataggagcacttcatctc  2794800                                                    --------->ANAC58                                                    --------->ANAC58      ---------->DOF2                             <---------AtLEC2     <---------WRKY38(1)                     <----------DOF2     <---------WRKY45                       ------>ZmHOX2a(2)                          <---------ALFIN1     <---------WRKY12                      <------ZmHOX2a(2)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->YAB1                           <---------RVE1(1)              --------->TOE1(3) --At4g35610                              <---------ARR11(3)            <---------TOE1(3) ->At4g35610                              --------->AGP1 --------->GLK1(2)--------->TOE2(3)   ------- XXXXXXXXXXMIR830      <---------ANAC58   --------->ARR11(3)      --------->ARR11(3)   --------->AtMYB61 xxxsmallRNA(se3)      <---------ANAC58  <---------GLK1(1)        <---------ARR11(3)<-----------GT1   acaatagtcaaaggagacaccatagacgtgctagagaaggtagagatcttttgcaagacaatcttggaggtcttaagcttaaaattccaccattccatgg  2794900              <---------ANAC58              <---------ANAC58           <---------GLK1(2)        <---------HSFB2a(2)        <-----------RAV1(2)                                      --------->ZAT14       ------>ZmHOX2a(2)                                         <---------ZAT14     --------->ARR11(3)                                        --------->ANAC46   <---------KAN4(1)                                      --------->REM1(1)   --------->KAN4(1)                                   --------->TOE1(3)  <------ZmHOX2a(2)   <------  <---------KAN4(2)      ----------->GT1               --------->TOE2(3) <---------ARR11(3) <-------- -->AtLEC2<---------At4g35610 ---------->DOF2  <<<<<<<<<MYB2 --------->ZAT6          ----------->ARR10   aaagaatgatccagatgcttatttggaatgagaaaagaagattgaattggttttcaaccttcaacactacaccgagatcaatagggtaagagttgctgct  2795000                                   --------->At4g35610              <<<<<<<<<<<<<<<<<LFY                                   <---------At4g35610              >>>>>>>>>>>>>>>>>LFY                         <------MYB83 ----------->GT1      <---------ATHB12                         <------MYB46(1)              --------->ANAC58 <------------CBF                         <---------MYB46(3)           <---------ANAC55(2)                        --------->MYB111(2)           --------->ANAC55(1)                        --------->MYB55(2)      --------->ANAC46 --------->At4g35610                        <---------AtMYB61      <---------LBD16  <---------ARR11(3)                 <----------DOF2<------ZmHOX2a(2)     --------->ANAC58 --------------------->WRI1     <---------AHL20(2) <---------MYB46(3)    --------->MYB52(1)--------->ARR11(3)                  -    --------->AHL20(2)  --------->ALFIN1 <-----------GT1--------->TGA2(2)                         <-- ---At4g35610   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ANAC55(2)                     *TSS--- -ANAC46<---------YAB1  --------->MYB111(1)  <---------ZAT14--------->YAB1  <---------GLK1(2)--------   actgaattttatgactatgctttgagttggtgggatcagctagttacttcacggagacgtaatcaagagcttccattggaatcttggtccgaaatgaaag  2795100                                              <---------At4g35610                                              --------->At4g35610                                             ------->TEIL                <---------ANAC58            --------->REM1(1)                <---------ANAC58           <-------TEIL              --------->ARR14(2)        --------->ZAT2       <------ZmHOX2a(1)                <---------At4g35610   <---------YAB1                       --------->At4g35610 --------->YAB1<-------TEIL     <---------ALFIN1                          --------->ARR14(2)       -- -------->ICU4<---------ARR14(2)--------->AtMYB61                    --------->MYB52(1)    --------->ZAT18 -------------AGL15            --------->MYB46(3)           --------->GLK1(2)        xxxxxxxxxxxxxxxx ------------>AGL15            <---------MYB55(2)         <------ZmHOX2a(1)    <---------MYB52(1)  -- -->DOF2   <---------------AtSPL3       <---------ZAT2  <---------TOE2(3) <---------ARR14(2)       --   ctattatgaggaagaggttcgtccctagtcactaccaccgagagctgcatctcaagttgaggaatcttacacaagggaaccgttctgtcgaagagtacta  2795200                        ------>NtERF2                       --------->ZAT18                       --------->LBD16                      <---------ANAC58                      <---------ANAC46                                       <---------AHL20(2)                      <---------ANAC58                             <---------ANAC58            <----------DOF2                     --------->ANAC58   <---------ANAC58 ------->ANAC58  <---------REM1(1)              --------->ANAC58   <---------ANAC46          -------- xxxxx>smallRNA(si3) <---------LBD16     <---------ARR14(2)  <---------TOE1(3)        --------->ARR11(3) ------->ANAC58  <-----------RAV1(1)    <------ZmHOX2a(1)    <---------TOE2(3)        <---------ARR11(3) ------->ANAC46 <---------TOE2(3)     <---------TOE2(3)  <-----------HVH21   --------->AHL20(2)   caaggaaatggagactttgatgttgcgggctgatatttctgaggatagagaagcaactctgtcaaggtttcttggggatttaaacagagatattcaagac  2795300                                                                                                  <--                                                                                           <---------                                                                                           ----------                                                                                          <------ZmHOX2a(2)                                                                                          ===========                                                                                         --------->ARR11(3)                                                                                         <---------ARR11(3)                                                                          <------ZmHOX2a(1)==========                                  <-----------RAV1(1)      --------->At4g35610  <---------ARR11(3)<--                                  <---------REM1(1)        <---------At4g35610  --------->ARR11(3)<-- ->ANAC46                        --------->ARR11(3) <---------YAB1        =======================HOX2a_HOX2a   agattggagactcaatactatgttcaaatagaagagatgttgcacaaggcgattttgtttgagcagcaagttaagaggaagagttcttcacgatctagtt  2795400                                                           --------->YAB1          --------->ATHB12                                <---------YAB1         --------->MYB46(3)                        --------->ZAT2      <------ZmHOX2a(1)                            <---------At4g35610   <-----------RAV1(2)                          --------->At4g35610 -------TOE2(3)                                 <---------ZAT2 --------AGL2                 ---------->DOF2   <---------At4g35610 ------->AGL3                --------------->AGL15 --------->At4g35610 ============HOX2a_HOX2a   -------->P <------ZmHOX2a(1) --------->YAB1                              < ============================================MADS_MADS <---------YAB1                  ---------->DOF2 -------TOE1(3)          <---------MYB111(1)    --------->ZAT2                        <------NtERF2<- -------YAB1      <xxxxxxxxxxxxxxxsmallRNA(fl3)--------->ANAC46        <-----------HVH21           --   atggttcaggaaccattgctaagcctacttaccaaagagaggagagaaccagcagctatcataataagccgattgtcagtccaagggccgaaagtaaacc  2795500               <------ZmHOX2a(2)                                                                   <-    <---------ZAT14       --------->DAG2                 <---------YAB1                   --------->ICU4 --------->At4g35610    ---------->DOF2             <---------ANAC58                  <------ZmHOX2a(1) -----------RAV1(1)---------->DOF2                  <---------ANAC58                xxxxxxxxxxxxxxxxx ------MYC3   --------->ARR11(3)                <---------ZAT6                    ---------->DOF2  <- ----->MYC3   <---------ARR11(3)         --------->REM1(1)                <-----------HVH21  <-------   atatgctgcagttcaagatcacaaaggaaaggctgaaatttctacatctagagttcgtgatgttagatgttacaaatgtcaagggaaaggacattatgct  2795600  Previous    Next  AGI:  At2g06890.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 7.3e-184 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 2795094    to: 2799270    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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