Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------ARR14(2)                                                                                        <xxxxxxxxxxxx           <---------MYB55(2)   --------->ANAC46                                        --------->ARR14(2)           --------->MYB46(3)  ---------->ID1                                          --------->GLK1(1)          --------->ANAC58  <----------DOF2                                      --------->MYB52(1)          --------->ANAC58  <---------DAG2                        --------->ANAC46 --------->ANAC58         ------>NtERF2<----------DOF2                             --------->ANAC58 --------->ANAC46--        <---------ALFIN1 ---------->ID1                           --------->ANAC58 --------->ANAC58--     --------->ANAC46 <---------DAG2        <----------DOF2 ------>ZmHOX2a(1)   ------>ZmHOX2a(1)  --   atcgtcttcggcacccagcgctaacttttccttttcgccataacaactttcgcaaacccatcctgctctcgcaatcggactcctaacgcaaatccatcgg  2778800                                                                                                -----                                                                                                -----                                                                                              <------                                                                                            ---------                                                                                            <--------                                                                                          -----------                                                                                  <---------AtLEC2                                                                                  <---------ANAC58       <-------MYC3                          <-----------RAV1(2)              <---------At4g35610       ------->MYC3                 <-----------GT1                           ----------->RAV1(2) xxxxsmallRNA(i)                   <-----------GT1       ----------->HVH21  <-----------GT1 <-------- ------->ANAC58       <---------RAP2.6(3)   <---------LBD16                xxxxxxxxxxxxxxxx>smallRNA(i) ------->AtLEC2 ---------->DOF2<----------DOF2--------->LBD16  --------->ANAC58   <---------ANAC58 -- ------->ANAC58xxxxxxxxxxxxxxxx>smallRNA(i) --------->LBD16    --------->ANAC58  --------->ZAT2------   catgcaaaacgtgttcgaaatagccgttctcatcttttttccattccccaggtactagtctgaccacgaactccatttacacctgcttggccaatatccg  2778900                                                                               --------->YAB1   --------->MYB46(3)                                            --------->HSFB2a(2)   <------------MYB.PH3(2)                                       --------->ANAC46   <---------MYB52(2)                                            <---------ANAC55(2) ---->LBD16                                                      --------->ANAC55(1) ---->At4g35610                                                  --------->ANAC55(2) ---LBD16                        --------->AHL20(2)   <---------ICU4        --------->YAB1 >ARR14(2)             <---------MYB46(3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -ARR14(2)             --------->MYB52(2)       ----------->GT1  <---------HSFB2a(2) <---------ANAC55(2) >ARR10         <-----------GT1  <---------AHL20(2)  --------->ICU4        --------->ZAT6          <- -ARR11(3)      --------->ARR14(2)            ---------->DOF2    --------->ANAC58    --------->ANAC55(2) ------->At5g28300   <---------MYB52(1)    --------->TOE1(3)     --------->ANAC58   <-------TEIL   -- --->ANAC46     <---------ARR14(2)         --------->TOE2(3)    <---------LBD16--------->AHL20(2) <--   cagtaacaaacttgttagtatccgtttgtttcaatttatatgaaaccctaaagtaaaaatcactcttacggaacttaacaataatatacgtatgactcag  2779000                                                                             <----------DOF2             <----------DOF2                                     <------NtERF2         <-----------GT1                                       --------->ETT(1)      <----------DOF2                                  <---------AHL20(2) <---------ARR11(3)   <-----------GT1                       <---------At4g35610<-----------RAV1(1) --------ARR11(3)             <---------LBD16         --------->AHL20(2)  --------->ARR11(3) ------->ARR11(3)        --------->ARR14(2)         <----------DOF2     <---------TOE2(3) -------RVE1(1)          <---------ARR14(2)   <----------DOF2  <---------ANAC46     <---------YAB1   agattttacttttacctttcagtctcgaattctctgggtgtttagctcctttcgcattaattttgtcggagactaaggtctttagtctgatagttttttt  2779100                                                                                      <---------YAB1                                                                                    *TSS                                                                                   --------->ICU4                                        <-------MYC3                               <---------YAB1                                        ------->MYC3           ------->GAMYB    --------->ICU4                            <---------ICU4                   -------->P <---------ARR14(2) --------->AHL20(2)                            <---------AHL20(2)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <------                 <---------ZAT14       <---------ANAC46  --------->ANAC58  ----------->HVH21<--------                 <---------ARR14(2)   ------>MYB83       --------->ANAC46  <---------ETT(1)--------->AHL20(1)                 --------->ZAT14      ------>MYB46(1)    --------->ANAC58  --------->ANAC46<---------ARR11(3)                 --------->ARR14(2) --------->AtMYB61--------->ARR11(3) --------->ARR14(2) <---------AHL20(2)                 --------->ZAT18 --------->ANAC46    <---------ARR11(3)--------->RVE1(1)   <---------AHL20(1)      --------->ANAC58     --------->AHL20(2)       <---------GLK1(1)  <---------GLK1(1)   --------->ARR11(3)      --------->ANAC58     <---------ATHB12         --------->GLK1(1)  --------->CCA1(1) ------->TEIL   tttgatgcaaggaagagagtatactgctaataaatacaccaacgtgtataagtgatatctcgcaaccccataaatatccgacatgatgatgaatatattt  2779200                      --------->ARR11(3)                      --------->ARR14(2)                      --------->GLK1(2)                      <---------ARR11(3)                      --------->ARR14(3)                      <---------ARR14(3)                      <---------ARR14(2)                      <-----------ARR10                     <---------ARR14(2)             --------->ZAT2                                 --------->ARR14(2)             <---------ZAT2                               <----------DOF2             <---------At4g35610                         <---------ANAC46                        ----       <---------TOE2(2)          --------->ARR11(3)    --------->LBD16                 --------->ANAC58       <---------TOE1(2)          <---------ARR11(3)    ------>NtERF2                   --------->ANAC58       <---------TOE2(3)     <-------GAMYB    <---------AHL20(2)                     <---------ARR14(2)       <---------TOE1(3)    ----------->GT1  --------->AHL20(2)               <---------YAB1    <---- ---AHL20(2) --------->At4g35610 <---------CCA1(2)    --------->ATERF1(1)<---------ZAT6 --------->ANAC46 -AHL20(2)  --------->MYB52(2)<---------MYB52(1) <---------REM1(1)   ---------->DOF2 --------->ARR14(2)   tttgtttccaaggttagctgagaaaatcttcggttatatcttgggcattaaatgtagccgcgtttactctctaaagtgttatcagaggctacgctatttt  2779300                             --------->MYB52(2)                             <---------MYB46(3)                             =================RAV        ----------->GT1      <-----------RAV1(1)       ----------->GT1     <---------MYB52(1)      <------MYB83        xxxxxxxxxxxxxxxx>smallRNA(i)      <------MYB46(1)  --------->GLK1(2)    <--------P        <---------ARR14(2)                                                 <---------ATHB12  <------MYB83        --------->ARR14(2)         <---------AHL20(2)                     ------>MYB46(1)  <------MYB46(1) <---------At4g35610         <---------ARR11(3)                        ------>MYB83 --------->MYB59  --------->At4g35610         --------->ARR11(3)                   <-----------GT1 --------->MYB111(1)  <---------GLK1(2)<------ZmHOX2a(1)                     ------>ZmHOX2a(1) ----->ATHB12  --------->RAP2.6(3)<-----------RAV1(2)                       --------->TOE2(3) -----YAB1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->AHL20(2)         --------->ANAC55(2)   ---   gatttggtaggggtaatttcggcagaatcgtttgtcgcagaggagtgagattttatttctgagtttttatgcatagttccttaatttaccaatcttctaa  2779400                       -------->ATHB1                       <---------ICU4                      --------->AHL20(2)                                                         ----                      <---------ATHB51                                                           <---                --------->TOE1(3)                                                                <---                --------->TOE2(3)                                                                ----         <---------YAB1--------->YAB1                                                           -----        --------->AHL20(2)           >>>>>>>>>ARR2                                 --------->ANAC58 -       <---------AHL20(2)<---------YAB1        --------->ZAT14              --------->GLK1(2)   -----      --------->ICU4  --------->ICU4--------->ATHB12 <---------YAB1     --------->YAB1----------->RAV1(1)   <------ZmHOX2a(1)  <---------AHL20(2)       <---------ZAT14         --------->AHL20(2)     ------- ------>YAB1 <-----------GT1   <---------YAB1--------->ANAC46    --------->YAB1    --------->ANAC58 <   gcataggaattaatataaccctaaattattattctgtttgattgtatacagcactataactgttttagcataaataaaaatcggtaagcaacataagaat  2779500       --------->YAB1                                                              <---------YAB1       --------->AHL20(2)                                                    <------ZmHOX2a(2)     --------->AHL20(1)                                              --------->AHL20(1)     --------->AHL20(2)                                              --------->AHL20(2)           <--    --------->YAB1                                                   <---------AHL20(1)        <----- ----->YAB1                                                        <---------TOE2(3)           <----- ------ICU4                                                       --------->YAB1   <---------AHL20(2) -----HAHB4                                                       <---------AHL20(2)        <-------- ----->ATHB51                                                     --------->AHL20(2)  <---------YAB1 ---->AHL20(2)                                                  --------->AHL20(2)--------->AHL20(2) -------->AHL20(2)                                              <---------AHL20(2)<---------AHL20(1) ---->ICU4             <---------TOE2(3)                        <---------YAB1    --------->YAB1<---- -->YAB1            <---------AHL20(2)                         --------->TOE2(3)--------->ICU4<------ ---------AHL20(2) <----------DOF2                <---------AHL20(2) <---------AHL20(2)  <---------YAB1   aattaaaaataatattctctgttttaatgaagtttgatattttgagttttattttttttcacaaatattaatattttagatcaatattattcttattttt  2779600    --------->WOX13(1)                    --------->TOE2(3)   <---------AHL20(2)                     --------->YAB1 -------YAB1                            <---------ARR11(3) ----YAB1         <---------AHL20(2)    --------->GLK1(2) ----AHL20(2)     --------->AHL20(2)    --------->ARR11(3)                      <------ZmHOX2a(1) -YAB1           --------->AHL20(2)    --------->RVE1(1)                      <---------TOE1(2)------ -------GT1   --------->AHL20(2)       --------->CCA1(1)                 <---------YAB1   ----------- ---AHL20(2)  <---------AHL20(2)     --------->AHL20(2)               <---------YAB1  --------->AHL20(2)   attattcaattaacaaaaaattaatagaaaactaaaaaaaaaaatcttaattttgtaagaaaaatccaaaacatcattcttaggaacataaattgtataa  2779700  Previous    Next  AGI:  At2g06870.1    Description:  transposable element gene. Mutator-like transposase family, has a 2.3e-49 P-value blast match to Q9SHN7 /450-633 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 2775700    to: 2779184    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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